Wall clock time and date at job start Tue Mar 31 2020 07:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47034 * 2 1 4 4 C 1.53004 * 109.47001 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47016 * 178.69312 * 4 2 1 6 6 C 1.46505 * 120.00172 * 275.58783 * 5 4 2 7 7 C 1.50695 * 109.46970 * 269.99897 * 6 5 4 8 8 H 1.08007 * 119.99861 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00017 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00175 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99834 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47156 * 90.00222 * 11 9 7 13 13 H 1.48500 * 109.47168 * 209.99731 * 11 9 7 14 14 H 1.48496 * 109.47582 * 329.99972 * 11 9 7 15 15 C 1.34783 * 119.99975 * 95.58433 * 5 4 2 16 16 O 1.21390 * 119.99659 * 174.36617 * 15 5 4 17 17 C 1.49095 * 120.00037 * 354.64583 * 15 5 4 18 18 O 1.21611 * 119.99768 * 4.22528 * 17 15 5 19 19 C 1.41525 * 120.00270 * 184.23221 * 17 15 5 20 20 C 1.38807 * 126.31158 * 0.02612 * 19 17 15 21 21 C 1.39390 * 106.92214 * 179.97438 * 20 19 17 22 22 C 1.35872 * 107.92205 * 359.97438 * 21 20 19 23 23 N 1.34885 * 109.07826 * 359.75845 * 22 21 20 24 24 C 1.46500 * 125.64572 * 180.25385 * 23 22 21 25 25 H 1.08995 * 109.47101 * 300.00277 * 1 2 3 26 26 H 1.08997 * 109.47014 * 59.99817 * 1 2 3 27 27 H 1.08994 * 109.46852 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47101 * 239.99723 * 2 1 3 29 29 H 1.09004 * 109.47415 * 52.17218 * 3 2 1 30 30 H 1.08999 * 109.47177 * 172.17597 * 3 2 1 31 31 H 1.09007 * 109.47029 * 292.17274 * 3 2 1 32 32 H 1.08999 * 109.46917 * 58.69144 * 4 2 1 33 33 H 1.08999 * 109.46859 * 298.69334 * 4 2 1 34 34 H 1.08999 * 109.46741 * 29.99845 * 6 5 4 35 35 H 1.08999 * 109.47203 * 149.99721 * 6 5 4 36 36 H 0.97000 * 120.00217 * 180.02562 * 10 9 7 37 37 H 1.07998 * 126.54042 * 359.95067 * 20 19 17 38 38 H 1.08003 * 126.03649 * 180.02562 * 21 20 19 39 39 H 1.07999 * 125.46134 * 180.02562 * 22 21 20 40 40 H 1.09007 * 109.46631 * 270.17167 * 24 23 22 41 41 H 1.09000 * 109.47745 * 30.17428 * 24 23 22 42 42 H 1.09005 * 109.47326 * 150.17661 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5046 -0.7485 1.2337 6 6 4.2099 -1.7994 0.4956 7 6 4.4488 -2.9775 1.4043 8 1 4.1097 -2.9465 2.4293 9 6 5.1004 -4.0951 0.9272 10 7 5.5129 -4.1331 -0.3209 11 14 5.3972 -5.5552 2.0539 12 1 4.2483 -6.4919 1.9634 13 1 6.6399 -6.2550 1.6403 14 1 5.5392 -5.0798 3.4535 15 6 4.2034 0.1931 1.8983 16 8 5.4125 0.1132 1.9712 17 6 3.4908 1.3295 2.5492 18 8 2.2752 1.3665 2.5467 19 6 4.2289 2.3654 3.1698 20 6 5.6118 2.4554 3.2493 21 6 5.9028 3.6297 3.9416 22 6 4.7260 4.2259 4.2669 23 7 3.7074 3.4743 3.8010 24 6 2.2827 3.7834 3.9453 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.5670 1.9952 0.8117 30 1 3.1210 1.4457 0.1399 31 1 1.7955 1.9143 -0.9517 32 1 1.6577 -1.7418 1.2612 33 1 1.6960 -0.1939 2.1391 34 1 3.6057 -2.1135 -0.3555 35 1 5.1659 -1.4148 0.1403 36 1 5.9709 -4.9195 -0.6566 37 1 6.3260 1.7501 2.8509 38 1 6.8894 4.0005 4.1772 39 1 4.6227 5.1550 4.8077 40 1 1.9074 3.3437 4.8695 41 1 2.1466 4.8644 3.9758 42 1 1.7339 3.3719 3.0982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813425678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:10 Heat of formation + Delta-G solvation = -20.233941 kcal Electronic energy + Delta-G solvation = -24481.790730 eV Core-core repulsion = 21042.331449 eV Total energy + Delta-G solvation = -3439.459281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.71092 -41.26100 -39.19049 -37.77567 -35.50344 -34.18722 -33.85383 -31.03035 -29.82952 -28.15839 -27.44148 -27.25618 -26.29483 -24.51894 -22.22055 -21.39068 -20.88083 -20.00900 -18.69064 -18.25331 -17.76129 -17.24118 -17.13476 -16.56744 -16.08328 -15.77739 -15.53107 -15.13586 -14.91204 -14.64239 -14.56241 -14.25885 -14.14229 -13.77271 -13.36336 -13.27342 -13.16229 -13.04955 -12.94500 -12.91301 -12.64117 -12.60728 -12.32518 -12.19930 -12.03521 -11.85474 -11.64898 -11.38818 -10.65989 -10.04272 -9.71367 -9.52688 -9.24414 -8.24834 -6.39596 -0.45399 1.21234 1.35875 1.38593 1.48925 1.58326 1.88573 2.22691 2.37972 2.45307 3.04559 3.18942 3.84859 3.96760 3.99735 4.04749 4.14129 4.22066 4.40409 4.46415 4.58993 4.62862 4.66407 4.77115 4.80118 4.88232 4.94951 4.99900 5.02851 5.13856 5.17819 5.21986 5.28160 5.35673 5.43959 5.52505 5.69559 5.74908 5.88707 6.00966 6.19510 6.32356 6.59994 6.67648 7.09961 7.31834 8.82767 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.005433 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.102352 B = 5152.322228 C = 6393.781267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.085 3.915 5 N -0.569 5.569 6 C 0.261 3.739 7 C -0.544 4.544 8 H 0.050 0.950 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.969 3.031 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.274 1.274 15 C 0.470 3.530 16 O -0.552 6.552 17 C 0.419 3.581 18 O -0.440 6.440 19 C -0.131 4.131 20 C -0.102 4.102 21 C -0.237 4.237 22 C 0.066 3.934 23 N -0.408 5.408 24 C 0.058 3.942 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.015 0.985 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.025 0.975 35 H 0.004 0.996 36 H 0.269 0.731 37 H 0.138 0.862 38 H 0.167 0.833 39 H 0.224 0.776 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 18.860 8.025 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.124 4.124 3 C -0.192 4.192 4 C -0.037 4.037 5 N -0.299 5.299 6 C 0.140 3.860 7 C -0.583 4.583 8 H 0.068 0.932 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.793 3.207 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.199 1.199 15 C 0.255 3.745 16 O -0.432 6.432 17 C 0.301 3.699 18 O -0.320 6.320 19 C -0.240 4.240 20 C -0.129 4.129 21 C -0.260 4.260 22 C -0.074 4.074 23 N -0.080 5.080 24 C -0.082 4.082 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.184 0.816 39 H 0.240 0.760 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.027 18.730 7.911 22.671 hybrid contribution 0.838 -1.407 -0.082 1.640 sum -9.189 17.323 7.829 21.115 Atomic orbital electron populations 1.21644 0.91998 1.02258 1.02795 1.21359 0.97865 0.96163 0.96969 1.22013 0.98509 0.96343 1.02330 1.22583 0.77632 1.01534 1.01938 1.48260 1.08231 1.25903 1.47519 1.18862 0.91342 0.84565 0.91188 1.21608 1.38347 1.00700 0.97632 0.93193 1.25821 0.94618 1.01524 0.96777 1.70039 1.39589 1.30753 1.16113 0.85404 0.78231 0.78563 0.78549 1.18849 1.20227 1.19915 1.20788 0.87823 0.84799 0.81135 1.90625 1.15340 1.77132 1.60102 1.19764 0.88252 0.84558 0.77346 1.90335 1.14837 1.75107 1.51741 1.19100 0.94050 0.95733 1.15088 1.22339 0.93557 0.98551 0.98448 1.21365 0.99858 0.97343 1.07414 1.22943 0.85541 0.98775 1.00106 1.44133 1.08650 1.15856 1.39362 1.22570 0.76065 1.04771 1.04795 0.91396 0.91313 0.92442 0.93353 0.90376 0.96615 0.92083 0.91820 0.85717 0.95662 0.97780 0.92248 0.84443 0.81595 0.75999 0.89550 0.85903 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.19 71.98 0.66 -2.43 16 2 C -0.10 -3.33 3.15 -10.79 -0.03 -3.36 16 3 C -0.13 -4.12 7.66 71.98 0.55 -3.57 16 4 C 0.08 3.20 4.86 86.38 0.42 3.62 16 5 N -0.57 -26.72 2.17 -828.16 -1.79 -28.51 16 6 C 0.26 14.73 5.14 85.63 0.44 15.17 16 7 C -0.54 -32.56 9.39 25.60 0.24 -32.32 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 9 C 0.01 0.70 5.46 84.66 0.46 1.17 16 10 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 11 Si 0.97 45.93 29.54 68.60 2.03 47.95 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.47 21.74 6.47 87.16 0.56 22.31 16 16 O -0.55 -29.26 13.70 -3.37 -0.05 -29.31 16 17 C 0.42 15.32 5.57 26.00 0.14 15.47 16 18 O -0.44 -14.19 8.10 -4.07 -0.03 -14.22 16 19 C -0.13 -4.26 6.72 39.14 0.26 -4.00 16 20 C -0.10 -3.39 9.95 22.68 0.23 -3.17 16 21 C -0.24 -5.50 10.81 22.00 0.24 -5.26 16 22 C 0.07 1.15 11.35 83.67 0.95 2.10 16 23 N -0.41 -9.14 3.15 -538.88 -1.70 -10.84 16 24 C 0.06 0.84 10.53 127.77 1.34 2.19 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 2.19 6.00 -2.39 -0.01 2.17 16 30 H 0.01 0.55 5.59 -2.39 -0.01 0.54 16 31 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.06 2.49 8.11 -2.39 -0.02 2.47 16 33 H 0.13 4.39 4.79 -29.40 -0.14 4.25 16 34 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 35 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.14 5.42 6.09 -2.91 -0.02 5.40 16 38 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.22 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 41 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 1.59 6.27 -2.38 -0.01 1.57 16 Total: -1.00 -75.51 339.15 6.10 -69.41 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.89 Total: 14.02 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.47 Total: 7.92 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.21 Total: -95.77 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.08 Total: -43.53 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -75.51 6.10 -69.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813425678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.177 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds