Wall clock time and date at job start Tue Mar 31 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47381 * 2 1 4 4 C 1.53001 * 109.47217 * 239.99542 * 2 1 3 5 5 C 1.50703 * 109.46953 * 60.00151 * 4 2 1 6 6 H 1.07996 * 119.99892 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99855 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00190 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99798 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47317 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47353 * 119.99758 * 9 7 5 12 12 H 1.48497 * 109.47273 * 239.99929 * 9 7 5 13 13 C 1.53001 * 109.46938 * 119.99895 * 2 1 3 14 14 N 1.46502 * 109.47027 * 299.99890 * 13 2 1 15 15 C 1.34777 * 120.00094 * 180.02562 * 14 13 2 16 16 O 1.21284 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00316 * 180.02562 * 15 14 13 18 18 H 1.08995 * 109.46942 * 54.99026 * 17 15 14 19 19 O 1.42892 * 109.47352 * 175.00054 * 17 15 14 20 20 C 1.50707 * 109.46627 * 294.99937 * 17 15 14 21 21 C 1.38223 * 119.61967 * 125.00243 * 20 17 15 22 22 C 1.38625 * 119.15978 * 180.27814 * 21 20 17 23 23 C 1.38677 * 118.42126 * 359.46985 * 22 21 20 24 24 C 1.38182 * 119.16110 * 0.48634 * 23 22 21 25 25 N 1.31856 * 119.61465 * 304.97315 * 20 17 15 26 26 H 1.09000 * 109.47069 * 300.00610 * 1 2 3 27 27 H 1.08999 * 109.46855 * 60.00151 * 1 2 3 28 28 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47565 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46864 * 299.99508 * 3 2 1 31 31 H 1.09000 * 109.47517 * 59.99665 * 3 2 1 32 32 H 1.08994 * 109.47391 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.46884 * 300.00509 * 4 2 1 34 34 H 0.96993 * 120.00108 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47156 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.47427 * 59.99912 * 13 2 1 37 37 H 0.96993 * 120.00148 * 0.02562 * 14 13 2 38 38 H 0.96698 * 114.00565 * 59.99374 * 19 17 15 39 39 H 1.08002 * 120.41617 * 359.97438 * 21 20 17 40 40 H 1.08003 * 120.79223 * 179.72202 * 22 21 20 41 41 H 1.08006 * 120.41702 * 180.22168 * 23 22 21 42 42 H 1.07998 * 119.61686 * 179.76233 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6256 -1.5523 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4238 1.5655 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4907 3.6696 16 8 2.5748 -1.4768 3.7809 17 6 1.3748 0.2194 4.9000 18 1 0.2885 0.2970 4.8563 19 8 1.7534 -0.5182 6.0638 20 6 1.9747 1.6005 4.9633 21 6 1.1454 2.7017 5.0636 22 6 1.7072 3.9679 5.1153 23 6 3.0889 4.0791 5.0752 24 6 3.8540 2.9327 4.9754 25 7 3.2848 1.7442 4.9229 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2490 33 1 1.6766 -1.7490 -1.2491 34 1 2.8599 -1.8837 -4.7335 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.9937 0.7578 2.3564 38 1 2.7087 -0.6266 6.1673 39 1 0.0730 2.5774 5.0964 40 1 1.0838 4.8468 5.1893 41 1 3.5609 5.0497 5.1170 42 1 4.9306 3.0110 4.9397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813705370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:01 Heat of formation + Delta-G solvation = -67.991802 kcal Electronic energy + Delta-G solvation = -23537.361512 eV Core-core repulsion = 20095.831294 eV Total energy + Delta-G solvation = -3441.530217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87032 -39.46147 -37.42620 -36.20709 -33.72371 -32.79276 -32.35231 -31.79959 -28.15621 -27.03370 -26.54041 -25.73517 -23.91427 -23.21767 -22.47551 -20.39061 -18.68583 -17.95156 -17.35737 -16.84606 -16.34919 -16.25483 -15.78999 -15.01461 -14.81355 -14.59211 -14.35639 -13.99367 -13.93053 -13.42110 -13.31402 -13.07979 -12.79631 -12.57007 -12.22061 -12.08913 -11.95759 -11.21861 -11.15242 -11.04346 -10.85051 -10.66672 -10.42784 -10.26437 -10.24349 -9.98273 -9.90090 -9.59347 -9.36834 -9.09953 -8.91845 -8.74640 -8.37469 -6.01173 -4.02581 0.68827 0.94281 2.68192 3.27547 3.28870 3.37093 3.39171 3.42501 3.81783 4.26299 4.35882 4.43984 4.53417 4.69686 4.75019 4.87109 5.09489 5.15867 5.34371 5.35871 5.49091 5.60973 5.72018 5.74288 5.81434 6.14025 6.20046 6.26984 6.30438 6.37383 6.53447 6.60193 6.73166 7.03352 7.05006 7.10444 7.27895 7.61151 7.63053 7.70361 7.75031 7.97530 8.34031 8.39928 9.02398 9.60651 11.10350 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.003647 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.272689 B = 7676.451704 C = 8338.138952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.715 5.715 15 C 0.491 3.509 16 O -0.529 6.529 17 C 0.147 3.853 18 H 0.135 0.865 19 O -0.529 6.529 20 C 0.092 3.908 21 C -0.154 4.154 22 C -0.073 4.073 23 C -0.167 4.167 24 C 0.105 3.895 25 N -0.467 5.467 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.391 0.609 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 12.070 18.879 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.182 4.182 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.368 5.368 15 C 0.275 3.725 16 O -0.405 6.405 17 C 0.083 3.917 18 H 0.152 0.848 19 O -0.334 6.334 20 C -0.046 4.046 21 C -0.174 4.174 22 C -0.099 4.099 23 C -0.187 4.187 24 C -0.052 4.052 25 N -0.177 5.177 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.231 0.769 38 H 0.240 0.760 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.573 10.439 18.859 21.708 hybrid contribution -0.419 1.711 -1.116 2.086 sum -2.992 12.150 17.743 21.711 Atomic orbital electron populations 1.21764 0.95261 1.01225 1.00182 1.20902 0.95471 0.95796 0.95081 1.21738 1.00494 0.95931 1.00032 1.19094 0.96369 0.95245 0.89453 1.21213 1.31140 1.12060 0.90505 0.92226 1.25013 0.95315 0.95066 0.99087 1.69972 1.36998 1.23006 1.23351 0.86598 0.78606 0.79678 0.83467 1.19818 1.21128 1.21110 1.21645 0.98988 0.96014 0.82786 1.46161 1.53054 1.31693 1.05880 1.21010 0.81166 0.85177 0.85126 1.90714 1.37317 1.26096 1.86374 1.20680 0.99976 0.85285 0.85759 0.84780 1.86539 1.30549 1.75279 1.41034 1.21602 0.90155 0.95610 0.97254 1.21969 1.01424 0.92858 1.01158 1.21614 0.95240 0.97660 0.95415 1.22234 0.94803 1.00526 1.01113 1.22801 1.00753 0.87191 0.94471 1.67433 1.11746 1.27600 1.10900 0.95340 0.91396 0.93254 0.93447 0.91425 0.95536 0.96352 0.96296 0.93074 0.91796 0.91677 0.76881 0.75950 0.84268 0.84420 0.84494 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.12 -2.21 8.05 37.15 0.30 -1.91 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.13 2.32 4.56 -4.04 -0.02 2.30 16 14 N -0.72 -10.59 4.91 -60.29 -0.30 -10.89 16 15 C 0.49 7.59 6.95 -10.99 -0.08 7.51 16 16 O -0.53 -10.32 16.32 -14.31 -0.23 -10.55 16 17 C 0.15 1.73 3.71 -29.03 -0.11 1.63 16 18 H 0.13 1.19 7.87 -51.93 -0.41 0.78 16 19 O -0.53 -6.84 12.98 -55.09 -0.72 -7.56 16 20 C 0.09 1.01 5.73 -82.58 -0.47 0.54 16 21 C -0.15 -1.27 9.71 -39.44 -0.38 -1.66 16 22 C -0.07 -0.52 10.18 -39.28 -0.40 -0.92 16 23 C -0.17 -1.24 10.11 -39.44 -0.40 -1.64 16 24 C 0.11 1.00 11.18 -17.55 -0.20 0.81 16 25 N -0.47 -5.67 9.99 -9.47 -0.09 -5.76 16 26 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.28 6.62 -51.92 -0.34 0.93 16 31 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 4.98 6.16 -40.82 -0.25 4.73 16 38 H 0.39 4.75 8.77 45.56 0.40 5.15 16 39 H 0.14 0.78 7.95 -52.49 -0.42 0.37 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 42 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -33.33 348.99 -7.69 -41.02 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.32 Total: 6.31 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.01 Total: -8.26 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.35 Total: -42.31 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.95 Total: -18.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.33 -7.69 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813705370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.967 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds