Wall clock time and date at job start Tue Mar 31 2020 07:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47381 * 2 1 4 4 C 1.53001 * 109.47217 * 239.99542 * 2 1 3 5 5 C 1.50703 * 109.46953 * 60.00151 * 4 2 1 6 6 H 1.07996 * 119.99892 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99855 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00190 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99798 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47317 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47353 * 119.99758 * 9 7 5 12 12 H 1.48497 * 109.47273 * 239.99929 * 9 7 5 13 13 C 1.53001 * 109.46938 * 119.99895 * 2 1 3 14 14 N 1.46502 * 109.47027 * 299.99890 * 13 2 1 15 15 C 1.34777 * 120.00094 * 180.02562 * 14 13 2 16 16 O 1.21284 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00316 * 180.02562 * 15 14 13 18 18 H 1.08995 * 109.46942 * 54.99026 * 17 15 14 19 19 O 1.42892 * 109.47352 * 175.00054 * 17 15 14 20 20 C 1.50707 * 109.46627 * 294.99937 * 17 15 14 21 21 C 1.38223 * 119.61967 * 125.00243 * 20 17 15 22 22 C 1.38625 * 119.15978 * 180.27814 * 21 20 17 23 23 C 1.38677 * 118.42126 * 359.46985 * 22 21 20 24 24 C 1.38182 * 119.16110 * 0.48634 * 23 22 21 25 25 N 1.31856 * 119.61465 * 304.97315 * 20 17 15 26 26 H 1.09000 * 109.47069 * 300.00610 * 1 2 3 27 27 H 1.08999 * 109.46855 * 60.00151 * 1 2 3 28 28 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47565 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46864 * 299.99508 * 3 2 1 31 31 H 1.09000 * 109.47517 * 59.99665 * 3 2 1 32 32 H 1.08994 * 109.47391 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.46884 * 300.00509 * 4 2 1 34 34 H 0.96993 * 120.00108 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47156 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.47427 * 59.99912 * 13 2 1 37 37 H 0.96993 * 120.00148 * 0.02562 * 14 13 2 38 38 H 0.96698 * 114.00565 * 59.99374 * 19 17 15 39 39 H 1.08002 * 120.41617 * 359.97438 * 21 20 17 40 40 H 1.08003 * 120.79223 * 179.72202 * 22 21 20 41 41 H 1.08006 * 120.41702 * 180.22168 * 23 22 21 42 42 H 1.07998 * 119.61686 * 179.76233 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6256 -1.5523 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4238 1.5655 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4907 3.6696 16 8 2.5748 -1.4768 3.7809 17 6 1.3748 0.2194 4.9000 18 1 0.2885 0.2970 4.8563 19 8 1.7534 -0.5182 6.0638 20 6 1.9747 1.6005 4.9633 21 6 1.1454 2.7017 5.0636 22 6 1.7072 3.9679 5.1153 23 6 3.0889 4.0791 5.0752 24 6 3.8540 2.9327 4.9754 25 7 3.2848 1.7442 4.9229 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2490 33 1 1.6766 -1.7490 -1.2491 34 1 2.8599 -1.8837 -4.7335 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.9937 0.7578 2.3564 38 1 2.7087 -0.6266 6.1673 39 1 0.0730 2.5774 5.0964 40 1 1.0838 4.8468 5.1893 41 1 3.5609 5.0497 5.1170 42 1 4.9306 3.0110 4.9397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813705370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:00 Heat of formation + Delta-G solvation = -92.025897 kcal Electronic energy + Delta-G solvation = -23538.403708 eV Core-core repulsion = 20095.831294 eV Total energy + Delta-G solvation = -3442.572414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72511 -40.54518 -38.86820 -37.32440 -35.32211 -34.07252 -33.39690 -32.73054 -29.44853 -28.74280 -27.99215 -27.07675 -24.91693 -24.48927 -23.51345 -21.61403 -20.11439 -18.90272 -18.51133 -18.37711 -17.65967 -16.96626 -16.87990 -16.46405 -16.24427 -15.75649 -15.47579 -15.13849 -15.08777 -14.63661 -14.49034 -14.36534 -13.96431 -13.94826 -13.79677 -13.30501 -12.91138 -12.88249 -12.70748 -12.61963 -12.37266 -12.25155 -12.11173 -11.96741 -11.57052 -11.19539 -10.93012 -10.85417 -10.76455 -10.53047 -10.31665 -10.14456 -9.99703 -8.14519 -6.22742 0.05852 0.36438 1.41848 1.42747 1.49859 1.54561 2.08049 2.44433 2.73808 3.09036 3.20150 3.39394 3.59837 3.81200 3.95227 4.04347 4.06056 4.19098 4.19505 4.23146 4.37692 4.59679 4.65473 4.68548 4.75075 4.82438 4.92662 5.06433 5.10012 5.18631 5.27141 5.34219 5.43355 5.47049 5.51224 5.55298 5.74953 5.77926 5.88784 6.25792 6.30351 6.53011 6.92608 6.97820 7.15210 7.45341 8.98395 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.003647 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.272689 B = 7676.451704 C = 8338.138952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.117 4.117 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.142 3.858 14 N -0.701 5.701 15 C 0.489 3.511 16 O -0.578 6.578 17 C 0.155 3.845 18 H 0.171 0.829 19 O -0.539 6.539 20 C 0.068 3.932 21 C -0.148 4.148 22 C -0.073 4.073 23 C -0.159 4.159 24 C 0.081 3.919 25 N -0.508 5.508 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.065 0.935 32 H -0.017 1.017 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.412 0.588 38 H 0.390 0.610 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.165 0.835 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 15.636 19.874 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.174 4.174 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.093 0.907 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.178 1.178 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.018 3.982 14 N -0.354 5.354 15 C 0.275 3.725 16 O -0.458 6.458 17 C 0.092 3.908 18 H 0.188 0.812 19 O -0.344 6.344 20 C -0.070 4.070 21 C -0.168 4.168 22 C -0.099 4.099 23 C -0.179 4.179 24 C -0.076 4.076 25 N -0.218 5.218 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.001 0.999 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.250 0.750 38 H 0.240 0.760 39 H 0.188 0.812 40 H 0.189 0.811 41 H 0.182 0.818 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.023 14.051 19.872 24.851 hybrid contribution 0.394 0.619 -1.361 1.546 sum -4.629 14.670 18.511 24.069 Atomic orbital electron populations 1.21700 0.93192 1.01173 1.01827 1.20700 0.96992 0.96095 0.92595 1.21644 0.99559 0.94749 1.01457 1.18975 0.94125 0.94266 0.92434 1.21614 1.30386 1.12089 0.90953 0.90744 1.25964 0.95637 0.95838 1.02790 1.70133 1.38871 1.25021 1.24055 0.85476 0.78040 0.78863 0.79146 1.17832 1.21127 1.21050 1.21213 0.97467 0.95506 0.84049 1.45904 1.52967 1.31817 1.04755 1.21846 0.80010 0.84487 0.86139 1.90691 1.39508 1.28446 1.87122 1.20846 1.01691 0.85343 0.82935 0.81218 1.86509 1.30613 1.75809 1.41478 1.21496 0.90275 0.95574 0.99637 1.22294 1.02679 0.92278 0.99515 1.22074 0.95383 0.98410 0.94037 1.22577 0.95260 1.00882 0.99165 1.23102 1.01654 0.87419 0.95427 1.67326 1.12932 1.29303 1.12264 0.90979 0.92344 0.94248 0.94969 0.92263 0.91663 0.99896 0.99559 0.93180 0.94272 0.93423 0.75042 0.76023 0.81230 0.81059 0.81764 0.81639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.41 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.37 7.65 25.60 0.20 -27.18 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 9 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 10 H -0.25 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.14 5.25 4.56 86.38 0.39 5.64 16 14 N -0.70 -19.92 4.91 -463.06 -2.27 -22.20 16 15 C 0.49 14.90 6.95 87.66 0.61 15.51 16 16 O -0.58 -23.33 16.32 15.95 0.26 -23.07 16 17 C 0.16 3.38 3.71 29.10 0.11 3.49 16 18 H 0.17 2.37 7.87 -2.39 -0.02 2.35 16 19 O -0.54 -13.62 12.98 -129.99 -1.69 -15.30 16 20 C 0.07 1.34 5.73 42.55 0.24 1.58 16 21 C -0.15 -1.83 9.71 22.36 0.22 -1.61 16 22 C -0.07 -0.72 10.18 22.47 0.23 -0.49 16 23 C -0.16 -1.85 10.11 22.36 0.23 -1.62 16 24 C 0.08 1.43 11.18 84.67 0.95 2.38 16 25 N -0.51 -11.91 9.99 -183.88 -1.84 -13.75 16 26 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 27 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 2.12 6.62 -2.38 -0.02 2.10 16 31 H 0.06 1.69 6.86 -2.39 -0.02 1.68 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 8.98 6.16 -92.71 -0.57 8.41 16 38 H 0.39 9.78 8.77 -74.06 -0.65 9.13 16 39 H 0.17 0.95 7.95 -2.91 -0.02 0.93 16 40 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -76.71 348.99 1.47 -75.23 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.18 Total: 20.04 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.88 Total: -9.22 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.83 Total: -93.04 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.43 Total: -38.38 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -76.71 1.47 -75.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813705370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.792 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds