Wall clock time and date at job start Tue Mar 31 2020 07:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47254 * 2 1 4 4 C 1.53005 * 109.46891 * 120.00405 * 2 1 3 5 5 N 1.46500 * 109.46819 * 173.69312 * 4 2 1 6 6 C 1.46502 * 119.99524 * 275.91182 * 5 4 2 7 7 C 1.50699 * 109.47311 * 263.13343 * 6 5 4 8 8 H 1.07998 * 119.99802 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99934 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99732 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00160 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47002 * 89.99921 * 11 9 7 13 13 H 1.48503 * 109.47259 * 209.99810 * 11 9 7 14 14 H 1.48502 * 109.47088 * 329.99955 * 11 9 7 15 15 C 1.34767 * 120.00440 * 95.91859 * 5 4 2 16 16 O 1.21613 * 120.00162 * 3.89869 * 15 5 4 17 17 C 1.47420 * 119.99980 * 184.18148 * 15 5 4 18 18 N 1.36069 * 126.45309 * 354.02098 * 17 15 5 19 19 C 1.29927 * 108.48119 * 179.82488 * 18 17 15 20 20 O 1.34051 * 109.24268 * 0.43912 * 19 18 17 21 21 C 1.34262 * 108.22864 * 359.72824 * 20 19 18 22 22 C 1.50693 * 126.52586 * 179.97438 * 21 20 19 23 23 C 1.52994 * 117.50232 * 8.74179 * 22 21 20 24 24 C 1.53005 * 117.49965 * 300.07970 * 22 21 20 25 25 H 1.09001 * 109.46995 * 300.00261 * 1 2 3 26 26 H 1.09004 * 109.46826 * 59.99648 * 1 2 3 27 27 H 1.08997 * 109.47589 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46995 * 239.99739 * 2 1 3 29 29 H 1.09002 * 109.46814 * 186.04206 * 3 2 1 30 30 H 1.09000 * 109.46979 * 306.04239 * 3 2 1 31 31 H 1.08999 * 109.47381 * 66.04340 * 3 2 1 32 32 H 1.09000 * 109.47324 * 53.68895 * 4 2 1 33 33 H 1.09001 * 109.46777 * 293.68910 * 4 2 1 34 34 H 1.09000 * 109.47190 * 23.13276 * 6 5 4 35 35 H 1.09002 * 109.47100 * 143.13488 * 6 5 4 36 36 H 0.96993 * 119.99386 * 179.97438 * 10 9 7 37 37 H 1.07994 * 125.37968 * 180.16640 * 19 18 17 38 38 H 1.09003 * 115.55089 * 154.41749 * 22 21 20 39 39 H 1.09003 * 117.49988 * 0.02562 * 23 22 21 40 40 H 1.09001 * 117.50438 * 145.02329 * 23 22 21 41 41 H 1.08998 * 117.49886 * 214.98001 * 24 22 21 42 42 H 1.09001 * 117.49475 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.4971 -0.8542 1.1758 6 6 4.0946 -1.9688 0.4363 7 6 4.4422 -3.0786 1.3947 8 1 4.2381 -2.9652 2.4491 9 6 5.0209 -4.2388 0.9254 10 7 5.3247 -5.2071 1.7619 11 14 5.3746 -4.4346 -0.8983 12 1 6.7387 -3.9283 -1.1951 13 1 5.2883 -5.8703 -1.2679 14 1 4.3781 -3.6610 -1.6817 15 6 4.2879 0.0489 1.7885 16 8 3.7933 0.9331 2.4612 17 6 5.7522 -0.0314 1.6382 18 7 6.4477 -1.0192 1.0121 19 6 7.7145 -0.7389 1.0820 20 8 7.8762 0.4115 1.7509 21 6 6.6632 0.8656 2.1048 22 6 6.3670 2.1279 2.8727 23 6 7.5284 3.0922 3.1219 24 6 6.9646 2.2584 4.2752 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1247 1.4443 -0.1082 30 1 1.5911 1.9866 -0.8310 31 1 1.7678 1.9242 0.9391 32 1 1.5874 -1.7112 1.3075 33 1 1.7718 -0.1465 2.1356 34 1 3.3835 -2.3369 -0.3033 35 1 4.9989 -1.6273 -0.0676 36 1 5.7315 -6.0234 1.4317 37 1 8.5116 -1.3401 0.6704 38 1 5.3810 2.5607 2.7036 39 1 8.5067 2.8138 2.7301 40 1 7.3065 4.1594 3.1171 41 1 6.3719 2.7773 5.0285 42 1 7.5716 1.4309 4.6425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815131395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:54 Heat of formation + Delta-G solvation = 19.958123 kcal Electronic energy + Delta-G solvation = -24553.982715 eV Core-core repulsion = 21116.266293 eV Total energy + Delta-G solvation = -3437.716422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.95962 -39.15373 -37.13670 -35.98218 -34.62188 -33.61715 -32.12019 -29.86047 -27.98027 -26.88706 -26.23280 -23.58811 -23.15682 -22.42352 -22.16143 -20.65934 -19.83867 -18.82292 -16.96129 -16.85927 -16.31937 -16.22546 -15.67618 -15.14212 -14.70928 -14.63431 -14.24861 -13.95827 -13.34413 -13.23151 -12.98109 -12.58060 -12.29449 -12.12062 -12.00835 -11.89509 -11.59934 -11.46596 -11.05389 -10.92998 -10.85310 -10.77820 -10.70758 -10.58775 -10.41179 -10.26427 -10.08184 -9.70678 -9.36723 -9.20581 -8.47039 -8.37386 -7.60683 -5.99986 -3.95128 1.50287 2.69862 2.92143 3.31644 3.37768 3.40079 3.76980 3.80586 4.06000 4.46815 4.51034 4.65808 4.87595 4.96081 5.18045 5.23056 5.28356 5.34665 5.40139 5.48201 5.57616 5.75870 5.83482 5.91944 5.94991 5.95851 6.04877 6.07659 6.10493 6.22801 6.28645 6.32255 6.34004 6.49222 6.56500 6.63828 6.72461 7.17238 7.50758 7.70787 8.04100 8.22536 8.58280 8.90762 9.04160 9.62147 11.13928 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.007877 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.890138 B = 3553.678124 C = 5451.363420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.136 4.136 4 C 0.121 3.879 5 N -0.572 5.572 6 C 0.198 3.802 7 C -0.504 4.504 8 H 0.068 0.932 9 C 0.077 3.923 10 N -0.904 5.904 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.291 1.291 14 H -0.268 1.268 15 C 0.602 3.398 16 O -0.564 6.564 17 C -0.042 4.042 18 N -0.405 5.405 19 C 0.150 3.850 20 O -0.208 6.208 21 C 0.044 3.956 22 C -0.070 4.070 23 C -0.175 4.175 24 C -0.160 4.160 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.261 0.739 37 H 0.247 0.753 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 13.979 -2.245 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.193 4.193 4 C -0.002 4.002 5 N -0.300 5.300 6 C 0.077 3.923 7 C -0.542 4.542 8 H 0.087 0.913 9 C -0.124 4.124 10 N -0.544 5.544 11 Si 0.703 3.297 12 H -0.200 1.200 13 H -0.217 1.217 14 H -0.193 1.193 15 C 0.390 3.610 16 O -0.445 6.445 17 C -0.163 4.163 18 N -0.132 5.132 19 C -0.078 4.078 20 O -0.095 6.095 21 C -0.012 4.012 22 C -0.088 4.088 23 C -0.212 4.212 24 C -0.197 4.197 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.263 0.737 38 H 0.169 0.831 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.628 13.672 -2.205 13.863 hybrid contribution 0.786 -0.267 -0.729 1.105 sum 1.414 13.405 -2.934 13.795 Atomic orbital electron populations 1.21747 0.94996 1.01702 1.01455 1.21526 0.95497 0.96903 0.99394 1.21743 1.00818 0.95600 1.01188 1.21483 0.80295 1.00823 0.97619 1.47742 1.05427 1.26083 1.50721 1.20270 0.94634 0.84737 0.92662 1.21160 1.39530 0.98322 0.95212 0.91340 1.24717 0.94967 0.95564 0.97128 1.69915 1.43521 1.06575 1.34373 0.86877 0.79455 0.76853 0.86521 1.19991 1.21725 1.19336 1.16660 0.83549 0.81501 0.79279 1.90664 1.74865 1.36874 1.42090 1.21447 0.95923 0.93481 1.05443 1.71372 1.02467 1.22550 1.16816 1.28202 0.96795 0.85343 0.97449 1.84246 1.32138 1.35815 1.57310 1.22406 0.81575 0.97209 0.99989 1.20599 0.99905 0.90989 0.97285 1.23072 0.97856 0.97335 1.02911 1.23046 1.03109 1.02669 0.90866 0.92679 0.92917 0.92561 0.91174 0.93235 0.93693 0.92270 0.90405 0.90192 0.95874 0.91598 0.92901 0.73678 0.83149 0.88332 0.87944 0.87643 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 37.16 0.34 -1.41 16 2 C -0.11 -1.75 3.11 -90.62 -0.28 -2.03 16 3 C -0.14 -2.05 8.18 37.16 0.30 -1.75 16 4 C 0.12 2.23 4.92 -4.04 -0.02 2.21 16 5 N -0.57 -12.35 2.31 -176.33 -0.41 -12.76 16 6 C 0.20 4.71 3.86 -5.19 -0.02 4.69 16 7 C -0.50 -14.00 8.92 -34.44 -0.31 -14.31 16 8 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16 9 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 10 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 11 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 15 C 0.60 13.03 6.34 -12.53 -0.08 12.95 16 16 O -0.56 -12.05 13.80 5.27 0.07 -11.98 16 17 C -0.04 -0.88 6.64 -83.02 -0.55 -1.43 16 18 N -0.40 -8.54 7.13 -11.48 -0.08 -8.62 16 19 C 0.15 2.50 13.19 51.96 0.69 3.19 16 20 O -0.21 -3.38 10.50 6.50 0.07 -3.31 16 21 C 0.04 0.78 6.90 -35.08 -0.24 0.54 16 22 C -0.07 -1.02 5.57 -91.78 -0.51 -1.53 16 23 C -0.17 -1.95 10.18 -26.70 -0.27 -2.22 16 24 C -0.16 -1.97 10.24 -26.69 -0.27 -2.24 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.84 7.08 -51.93 -0.37 0.47 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 33 H 0.08 1.47 7.20 -51.93 -0.37 1.10 16 34 H 0.02 0.55 7.08 -51.93 -0.37 0.18 16 35 H 0.07 1.59 4.74 -51.93 -0.25 1.34 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.25 2.96 8.06 -52.49 -0.42 2.53 16 38 H 0.15 2.30 6.76 -51.93 -0.35 1.95 16 39 H 0.10 1.08 8.01 -51.93 -0.42 0.67 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -32.53 345.32 -6.72 -39.26 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.36 Total: 3.62 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.32 Total: -1.27 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.28 Total: -47.99 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.14 Total: -15.29 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.53 -6.72 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815131395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.216 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds