Wall clock time and date at job start Tue Mar 31 2020 07:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47254 * 2 1 4 4 C 1.53005 * 109.46891 * 120.00405 * 2 1 3 5 5 N 1.46500 * 109.46819 * 173.69312 * 4 2 1 6 6 C 1.46502 * 119.99524 * 275.91182 * 5 4 2 7 7 C 1.50699 * 109.47311 * 263.13343 * 6 5 4 8 8 H 1.07998 * 119.99802 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99934 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99732 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00160 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47002 * 89.99921 * 11 9 7 13 13 H 1.48503 * 109.47259 * 209.99810 * 11 9 7 14 14 H 1.48502 * 109.47088 * 329.99955 * 11 9 7 15 15 C 1.34767 * 120.00440 * 95.91859 * 5 4 2 16 16 O 1.21613 * 120.00162 * 3.89869 * 15 5 4 17 17 C 1.47420 * 119.99980 * 184.18148 * 15 5 4 18 18 N 1.36069 * 126.45309 * 354.02098 * 17 15 5 19 19 C 1.29927 * 108.48119 * 179.82488 * 18 17 15 20 20 O 1.34051 * 109.24268 * 0.43912 * 19 18 17 21 21 C 1.34262 * 108.22864 * 359.72824 * 20 19 18 22 22 C 1.50693 * 126.52586 * 179.97438 * 21 20 19 23 23 C 1.52994 * 117.50232 * 8.74179 * 22 21 20 24 24 C 1.53005 * 117.49965 * 300.07970 * 22 21 20 25 25 H 1.09001 * 109.46995 * 300.00261 * 1 2 3 26 26 H 1.09004 * 109.46826 * 59.99648 * 1 2 3 27 27 H 1.08997 * 109.47589 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46995 * 239.99739 * 2 1 3 29 29 H 1.09002 * 109.46814 * 186.04206 * 3 2 1 30 30 H 1.09000 * 109.46979 * 306.04239 * 3 2 1 31 31 H 1.08999 * 109.47381 * 66.04340 * 3 2 1 32 32 H 1.09000 * 109.47324 * 53.68895 * 4 2 1 33 33 H 1.09001 * 109.46777 * 293.68910 * 4 2 1 34 34 H 1.09000 * 109.47190 * 23.13276 * 6 5 4 35 35 H 1.09002 * 109.47100 * 143.13488 * 6 5 4 36 36 H 0.96993 * 119.99386 * 179.97438 * 10 9 7 37 37 H 1.07994 * 125.37968 * 180.16640 * 19 18 17 38 38 H 1.09003 * 115.55089 * 154.41749 * 22 21 20 39 39 H 1.09003 * 117.49988 * 0.02562 * 23 22 21 40 40 H 1.09001 * 117.50438 * 145.02329 * 23 22 21 41 41 H 1.08998 * 117.49886 * 214.98001 * 24 22 21 42 42 H 1.09001 * 117.49475 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.4971 -0.8542 1.1758 6 6 4.0946 -1.9688 0.4363 7 6 4.4422 -3.0786 1.3947 8 1 4.2381 -2.9652 2.4491 9 6 5.0209 -4.2388 0.9254 10 7 5.3247 -5.2071 1.7619 11 14 5.3746 -4.4346 -0.8983 12 1 6.7387 -3.9283 -1.1951 13 1 5.2883 -5.8703 -1.2679 14 1 4.3781 -3.6610 -1.6817 15 6 4.2879 0.0489 1.7885 16 8 3.7933 0.9331 2.4612 17 6 5.7522 -0.0314 1.6382 18 7 6.4477 -1.0192 1.0121 19 6 7.7145 -0.7389 1.0820 20 8 7.8762 0.4115 1.7509 21 6 6.6632 0.8656 2.1048 22 6 6.3670 2.1279 2.8727 23 6 7.5284 3.0922 3.1219 24 6 6.9646 2.2584 4.2752 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1247 1.4443 -0.1082 30 1 1.5911 1.9866 -0.8310 31 1 1.7678 1.9242 0.9391 32 1 1.5874 -1.7112 1.3075 33 1 1.7718 -0.1465 2.1356 34 1 3.3835 -2.3369 -0.3033 35 1 4.9989 -1.6273 -0.0676 36 1 5.7315 -6.0234 1.4317 37 1 8.5116 -1.3401 0.6704 38 1 5.3810 2.5607 2.7036 39 1 8.5067 2.8138 2.7301 40 1 7.3065 4.1594 3.1171 41 1 6.3719 2.7773 5.0285 42 1 7.5716 1.4309 4.6425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815131395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:53 Heat of formation + Delta-G solvation = -0.709238 kcal Electronic energy + Delta-G solvation = -24554.878919 eV Core-core repulsion = 21116.266293 eV Total energy + Delta-G solvation = -3438.612626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.34015 -40.76362 -38.21735 -37.43284 -36.14696 -35.19923 -34.12869 -31.23307 -29.91738 -28.08588 -27.65308 -25.00997 -24.63762 -24.00650 -23.30904 -21.96900 -21.12613 -20.32418 -19.00396 -18.46476 -17.71599 -17.66710 -17.11875 -16.46261 -16.31759 -15.88979 -15.76095 -15.50338 -14.87448 -14.54886 -14.46464 -14.35505 -13.94567 -13.62735 -13.30364 -13.13592 -12.81566 -12.64658 -12.53580 -12.47642 -12.39286 -12.19078 -11.98889 -11.90782 -11.82273 -11.69048 -11.58839 -11.52669 -11.18961 -10.82466 -10.56071 -9.77238 -9.29724 -8.19427 -6.20069 0.11055 1.24107 1.40961 1.42959 1.51967 1.61038 2.23239 2.37305 2.42776 2.86714 3.17783 3.26355 3.42839 3.71500 3.86350 3.94152 4.00019 4.03825 4.17005 4.21462 4.54579 4.62257 4.63181 4.69749 4.73026 4.76219 4.83848 4.89391 4.93204 4.96643 5.02541 5.08030 5.13819 5.17761 5.19395 5.37009 5.43102 5.46170 5.59220 5.80791 6.25361 6.53821 6.68983 6.79202 7.25178 7.42715 8.98406 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.007877 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.890138 B = 3553.678124 C = 5451.363420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.582 5.582 6 C 0.213 3.787 7 C -0.498 4.498 8 H 0.012 0.988 9 C 0.024 3.976 10 N -0.954 5.954 11 Si 0.941 3.059 12 H -0.256 1.256 13 H -0.290 1.290 14 H -0.251 1.251 15 C 0.595 3.405 16 O -0.571 6.571 17 C -0.091 4.091 18 N -0.456 5.456 19 C 0.166 3.834 20 O -0.197 6.197 21 C 0.063 3.937 22 C -0.105 4.105 23 C -0.141 4.141 24 C -0.156 4.156 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.263 0.737 37 H 0.290 0.710 38 H 0.140 0.860 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 15.809 -3.931 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.185 4.185 4 C -0.006 4.006 5 N -0.310 5.310 6 C 0.091 3.909 7 C -0.537 4.537 8 H 0.030 0.970 9 C -0.172 4.172 10 N -0.596 5.596 11 Si 0.765 3.235 12 H -0.180 1.180 13 H -0.217 1.217 14 H -0.175 1.175 15 C 0.384 3.616 16 O -0.453 6.453 17 C -0.210 4.210 18 N -0.183 5.183 19 C -0.062 4.062 20 O -0.084 6.084 21 C 0.006 3.994 22 C -0.123 4.123 23 C -0.177 4.177 24 C -0.193 4.193 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.305 0.695 38 H 0.158 0.842 39 H 0.123 0.877 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.413 15.533 -3.887 16.074 hybrid contribution 0.574 -0.786 -0.047 0.975 sum 1.987 14.746 -3.934 15.391 Atomic orbital electron populations 1.21709 0.92345 1.02391 1.02803 1.21476 0.97592 0.96486 0.97117 1.21661 0.99350 0.95589 1.01909 1.21665 0.78898 1.00783 0.99272 1.47783 1.06639 1.25666 1.50894 1.19974 0.95079 0.84095 0.91783 1.21182 1.39319 0.99975 0.93185 0.96972 1.25551 0.94524 0.94847 1.02317 1.70078 1.45055 1.07418 1.37028 0.85813 0.80555 0.76938 0.80184 1.18016 1.21674 1.17504 1.16928 0.84346 0.81351 0.78949 1.90628 1.75315 1.37073 1.42291 1.21478 0.95881 0.95199 1.08405 1.71192 1.04414 1.23867 1.18871 1.29072 0.96563 0.84998 0.95615 1.84281 1.31332 1.35707 1.57082 1.22866 0.81247 0.97130 0.98176 1.20680 1.01142 0.91294 0.99172 1.23211 0.96268 0.98092 1.00173 1.23165 1.02817 1.02947 0.90402 0.92084 0.90789 0.92263 0.91803 0.95624 0.91052 0.92910 0.91225 0.90751 0.95373 0.90970 0.92767 0.69487 0.84247 0.87735 0.85097 0.85902 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.19 71.98 0.66 -2.45 16 2 C -0.11 -3.24 3.11 -10.79 -0.03 -3.27 16 3 C -0.13 -3.76 8.18 71.98 0.59 -3.17 16 4 C 0.12 4.40 4.92 86.38 0.43 4.82 16 5 N -0.58 -25.98 2.31 -830.04 -1.91 -27.90 16 6 C 0.21 10.28 3.86 85.63 0.33 10.61 16 7 C -0.50 -28.75 8.92 25.60 0.23 -28.52 16 8 H 0.01 0.81 8.06 -2.91 -0.02 0.78 16 9 C 0.02 1.40 5.47 84.65 0.46 1.86 16 10 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 11 Si 0.94 43.28 27.47 68.60 1.88 45.16 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 15 C 0.60 26.71 6.34 86.66 0.55 27.26 16 16 O -0.57 -25.27 13.80 -4.07 -0.06 -25.32 16 17 C -0.09 -3.85 6.64 40.41 0.27 -3.58 16 18 N -0.46 -19.30 7.13 -305.16 -2.18 -21.47 16 19 C 0.17 5.30 13.19 130.52 1.72 7.02 16 20 O -0.20 -6.13 10.50 0.33 0.00 -6.12 16 21 C 0.06 2.21 6.90 25.19 0.17 2.38 16 22 C -0.10 -2.97 5.57 -11.54 -0.06 -3.04 16 23 C -0.14 -2.72 10.18 30.62 0.31 -2.41 16 24 C -0.16 -3.57 10.24 30.62 0.31 -3.26 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.02 0.85 7.08 -2.39 -0.02 0.84 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 33 H 0.07 2.85 7.20 -2.39 -0.02 2.83 16 34 H 0.03 1.33 7.08 -2.39 -0.02 1.31 16 35 H 0.07 3.48 4.74 -2.39 -0.01 3.47 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.29 6.08 8.06 -2.91 -0.02 6.06 16 38 H 0.14 4.28 6.76 -2.39 -0.02 4.26 16 39 H 0.10 1.94 8.01 -2.39 -0.02 1.92 16 40 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -74.15 345.32 4.93 -69.22 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.96 Total: 21.39 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.94 Total: 4.26 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -3.79 Total: -108.58 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.05 Total: -31.45 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Total: -74.15 4.93 -69.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815131395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.508 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds