Wall clock time and date at job start Tue Mar 31 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34116 * 125.34729 * 2 1 4 4 C 1.38608 * 108.35185 * 179.87633 * 3 2 1 5 5 C 1.46615 * 126.52245 * 180.14720 * 4 3 2 6 6 O 1.21322 * 120.00448 * 180.24851 * 5 4 3 7 7 C 1.41576 * 106.96664 * 0.38338 * 4 3 2 8 8 C 1.36245 * 106.98118 * 359.76683 * 7 4 3 9 9 C 1.46839 * 125.80070 * 180.02562 * 8 7 4 10 10 O 1.21678 * 119.99877 * 184.99552 * 9 8 7 11 11 N 1.34776 * 120.00277 * 5.00347 * 9 8 7 12 12 C 1.46497 * 120.00016 * 185.09554 * 11 9 8 13 13 C 1.53003 * 109.46899 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47559 * 299.99948 * 13 12 11 15 15 C 1.53002 * 109.47157 * 60.00109 * 13 12 11 16 16 C 1.53001 * 109.47252 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.47541 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99297 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99920 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00732 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99764 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46851 * 60.00001 * 21 19 17 23 23 H 1.48502 * 109.46963 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47057 * 299.99867 * 21 19 17 25 25 H 1.09004 * 109.46885 * 264.10477 * 1 2 3 26 26 H 1.08997 * 109.47346 * 144.11021 * 1 2 3 27 27 H 1.08991 * 109.47670 * 24.10430 * 1 2 3 28 28 H 1.08001 * 125.82230 * 0.02562 * 3 2 1 29 29 H 1.08007 * 119.99722 * 0.26058 * 5 4 3 30 30 H 1.08001 * 126.51413 * 179.74540 * 7 4 3 31 31 H 0.97005 * 120.00154 * 5.09330 * 11 9 8 32 32 H 1.08998 * 109.47471 * 299.99669 * 12 11 9 33 33 H 1.08996 * 109.47161 * 60.00207 * 12 11 9 34 34 H 1.09000 * 109.46508 * 59.99979 * 14 13 12 35 35 H 1.08993 * 109.47529 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47095 * 300.00172 * 14 13 12 37 37 H 1.08998 * 109.46944 * 60.00072 * 15 13 12 38 38 H 1.08998 * 109.46919 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.46856 * 299.99888 * 15 13 12 40 40 H 1.09011 * 109.47038 * 300.00461 * 16 13 12 41 41 H 1.08995 * 109.47140 * 59.99695 * 16 13 12 42 42 H 0.96994 * 120.00714 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2408 1.0939 0.0000 4 6 3.5664 0.6888 0.0028 5 6 4.7452 1.5605 0.0069 6 8 5.8577 1.0765 0.0045 7 6 3.5657 -0.7270 -0.0045 8 6 2.2624 -1.1242 -0.0060 9 6 1.7881 -2.5139 -0.0125 10 8 0.5980 -2.7501 -0.1051 11 7 2.6707 -3.5278 0.0843 12 6 2.2105 -4.9135 -0.0342 13 6 3.4029 -5.8611 0.1109 14 6 4.4248 -5.5673 -0.9892 15 6 4.0542 -5.6553 1.4801 16 6 2.9224 -7.3084 -0.0134 17 6 4.0968 -8.2418 0.1301 18 1 5.0868 -7.8426 0.2941 19 6 3.9071 -9.6052 0.0532 20 7 2.7013 -10.0913 -0.1450 21 14 5.3630 -10.7622 0.2304 22 1 5.9951 -10.5623 1.5592 23 1 4.8963 -12.1669 0.1110 24 1 6.3546 -10.4771 -0.8375 25 1 -0.3633 -0.1056 1.0223 26 1 -0.3634 -0.8325 -0.6024 27 1 -0.3634 0.9379 -0.4196 28 1 1.8922 2.1161 0.0004 29 1 4.6232 2.6337 0.0121 30 1 4.4334 -1.3700 -0.0084 31 1 3.6108 -3.3400 0.2324 32 1 1.4822 -5.1228 0.7494 33 1 1.7469 -5.0602 -1.0097 34 1 4.7672 -4.5363 -0.9010 35 1 5.2741 -6.2427 -0.8861 36 1 3.9608 -5.7139 -1.9646 37 1 3.3263 -5.8647 2.2638 38 1 4.9034 -6.3307 1.5836 39 1 4.3967 -4.6243 1.5682 40 1 2.1941 -7.5180 0.7702 41 1 2.4587 -7.4546 -0.9889 42 1 2.5678 -11.0505 -0.1988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832744845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:20 Heat of formation + Delta-G solvation = -39.717028 kcal Electronic energy + Delta-G solvation = -23061.070794 eV Core-core repulsion = 19620.766662 eV Total energy + Delta-G solvation = -3440.304131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83167 -39.30202 -38.57621 -37.04833 -34.00907 -33.02710 -32.09991 -30.13704 -27.38366 -27.11317 -26.50922 -26.21141 -24.19628 -23.20560 -21.86107 -20.04624 -19.84506 -18.55758 -17.58638 -16.34009 -16.16876 -16.02349 -15.84962 -15.27848 -14.84527 -14.72478 -14.50018 -14.09524 -14.01906 -13.62623 -13.55829 -13.08970 -12.79637 -12.75132 -12.49684 -12.44919 -12.14352 -12.05452 -11.16793 -11.00037 -10.86946 -10.63030 -10.42291 -10.27033 -10.11687 -9.88749 -9.86239 -9.20315 -9.14856 -8.94697 -8.92524 -8.52635 -8.35764 -6.00058 -4.01424 1.12403 1.38783 2.32104 2.98315 3.32961 3.36231 3.37911 3.38122 3.41274 4.21203 4.42718 4.45388 4.50206 4.74600 4.89187 4.96332 5.15256 5.35418 5.35472 5.46370 5.56789 5.59780 5.74182 5.82118 6.16732 6.18849 6.21164 6.30409 6.37562 6.49690 6.50824 6.63556 6.72186 6.75457 7.05408 7.07291 7.11180 7.40916 7.61666 7.64305 7.74851 7.98368 8.25657 8.40536 9.03106 9.61855 11.11392 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023637 B = 0.003212 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.316608 B = 8714.277340 C = 9691.755280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.397 5.397 3 C 0.078 3.922 4 C -0.289 4.289 5 C 0.410 3.590 6 O -0.474 6.474 7 C -0.082 4.082 8 C -0.053 4.053 9 C 0.580 3.420 10 O -0.553 6.553 11 N -0.706 5.706 12 C 0.130 3.870 13 C -0.073 4.073 14 C -0.129 4.129 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.183 0.817 29 H 0.099 0.901 30 H 0.152 0.848 31 H 0.402 0.598 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 24.491 0.519 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.067 5.067 3 C -0.064 4.064 4 C -0.296 4.296 5 C 0.270 3.730 6 O -0.347 6.347 7 C -0.107 4.107 8 C -0.164 4.164 9 C 0.367 3.633 10 O -0.434 6.434 11 N -0.357 5.357 12 C 0.008 3.992 13 C -0.073 4.073 14 C -0.186 4.186 15 C -0.186 4.186 16 C 0.000 4.000 17 C -0.550 4.550 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.105 0.895 28 H 0.200 0.800 29 H 0.115 0.885 30 H 0.170 0.830 31 H 0.238 0.762 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.292 23.773 0.417 24.004 hybrid contribution 0.918 -0.586 0.159 1.101 sum -2.374 23.187 0.577 23.315 Atomic orbital electron populations 1.22420 0.75287 1.05315 1.04933 1.43667 1.07558 1.05045 1.50469 1.22565 0.89825 0.92025 1.02024 1.20744 0.94301 0.95052 1.19525 1.23042 0.86139 0.93813 0.70055 1.90550 1.27885 1.80007 1.36302 1.21334 0.94865 0.94635 0.99856 1.19947 0.90142 0.88077 1.18204 1.17003 0.85940 0.83265 0.77085 1.90771 1.15756 1.85209 1.51615 1.45917 1.11185 1.06578 1.71997 1.21702 0.97831 0.77865 1.01812 1.20928 0.93320 0.97837 0.95257 1.21778 0.99869 0.98828 0.98109 1.21774 1.01443 0.98945 0.96397 1.19081 0.96620 0.86907 0.97414 1.21149 0.94056 0.90773 1.49058 0.92248 1.25004 0.95495 0.98446 0.95490 1.69947 1.20774 1.12860 1.49890 0.86706 0.82944 0.80008 0.78625 1.20301 1.21411 1.20286 0.90006 0.87412 0.89503 0.80012 0.88530 0.83016 0.76197 0.91460 0.91576 0.95154 0.91290 0.93306 0.93321 0.91295 0.95173 0.96330 0.96327 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.43 59.84 0.62 1.08 16 2 N -0.40 -3.85 3.12 -120.06 -0.37 -4.22 16 3 C 0.08 0.57 11.37 -16.42 -0.19 0.38 16 4 C -0.29 -2.76 6.13 -105.11 -0.64 -3.41 16 5 C 0.41 3.61 11.68 34.11 0.40 4.00 16 6 O -0.47 -6.34 17.74 5.52 0.10 -6.24 16 7 C -0.08 -0.97 10.09 -39.03 -0.39 -1.36 16 8 C -0.05 -0.66 6.81 -82.40 -0.56 -1.22 16 9 C 0.58 8.78 7.78 -12.78 -0.10 8.68 16 10 O -0.55 -9.73 14.68 5.21 0.08 -9.65 16 11 N -0.71 -10.47 4.93 -61.57 -0.30 -10.78 16 12 C 0.13 2.28 4.57 -4.04 -0.02 2.26 16 13 C -0.07 -1.38 0.54 -154.50 -0.08 -1.46 16 14 C -0.13 -2.27 8.05 37.16 0.30 -1.98 16 15 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 16 C 0.04 0.91 4.04 -27.88 -0.11 0.79 16 17 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 18 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 21 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.11 1.06 6.47 -51.93 -0.34 0.73 16 27 H 0.09 0.34 8.11 -51.93 -0.42 -0.08 16 28 H 0.18 0.46 8.06 -52.49 -0.42 0.03 16 29 H 0.10 0.40 8.06 -52.48 -0.42 -0.02 16 30 H 0.15 1.73 7.42 -52.49 -0.39 1.34 16 31 H 0.40 5.29 5.04 -40.82 -0.21 5.09 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 35 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 40 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -33.81 348.35 -6.37 -40.18 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.99 Total: 1.45 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.84 Total: -6.56 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.06 Total: -40.65 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.17 Total: -15.89 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.81 -6.37 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832744845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.466 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds