Wall clock time and date at job start Tue Mar 31 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34116 * 125.34729 * 2 1 4 4 C 1.38608 * 108.35185 * 179.87633 * 3 2 1 5 5 C 1.46615 * 126.52245 * 180.14720 * 4 3 2 6 6 O 1.21322 * 120.00448 * 180.24851 * 5 4 3 7 7 C 1.41576 * 106.96664 * 0.38338 * 4 3 2 8 8 C 1.36245 * 106.98118 * 359.76683 * 7 4 3 9 9 C 1.46839 * 125.80070 * 180.02562 * 8 7 4 10 10 O 1.21678 * 119.99877 * 184.99552 * 9 8 7 11 11 N 1.34776 * 120.00277 * 5.00347 * 9 8 7 12 12 C 1.46497 * 120.00016 * 185.09554 * 11 9 8 13 13 C 1.53003 * 109.46899 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47559 * 299.99948 * 13 12 11 15 15 C 1.53002 * 109.47157 * 60.00109 * 13 12 11 16 16 C 1.53001 * 109.47252 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.47541 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99297 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99920 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00732 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99764 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46851 * 60.00001 * 21 19 17 23 23 H 1.48502 * 109.46963 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47057 * 299.99867 * 21 19 17 25 25 H 1.09004 * 109.46885 * 264.10477 * 1 2 3 26 26 H 1.08997 * 109.47346 * 144.11021 * 1 2 3 27 27 H 1.08991 * 109.47670 * 24.10430 * 1 2 3 28 28 H 1.08001 * 125.82230 * 0.02562 * 3 2 1 29 29 H 1.08007 * 119.99722 * 0.26058 * 5 4 3 30 30 H 1.08001 * 126.51413 * 179.74540 * 7 4 3 31 31 H 0.97005 * 120.00154 * 5.09330 * 11 9 8 32 32 H 1.08998 * 109.47471 * 299.99669 * 12 11 9 33 33 H 1.08996 * 109.47161 * 60.00207 * 12 11 9 34 34 H 1.09000 * 109.46508 * 59.99979 * 14 13 12 35 35 H 1.08993 * 109.47529 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47095 * 300.00172 * 14 13 12 37 37 H 1.08998 * 109.46944 * 60.00072 * 15 13 12 38 38 H 1.08998 * 109.46919 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.46856 * 299.99888 * 15 13 12 40 40 H 1.09011 * 109.47038 * 300.00461 * 16 13 12 41 41 H 1.08995 * 109.47140 * 59.99695 * 16 13 12 42 42 H 0.96994 * 120.00714 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2408 1.0939 0.0000 4 6 3.5664 0.6888 0.0028 5 6 4.7452 1.5605 0.0069 6 8 5.8577 1.0765 0.0045 7 6 3.5657 -0.7270 -0.0045 8 6 2.2624 -1.1242 -0.0060 9 6 1.7881 -2.5139 -0.0125 10 8 0.5980 -2.7501 -0.1051 11 7 2.6707 -3.5278 0.0843 12 6 2.2105 -4.9135 -0.0342 13 6 3.4029 -5.8611 0.1109 14 6 4.4248 -5.5673 -0.9892 15 6 4.0542 -5.6553 1.4801 16 6 2.9224 -7.3084 -0.0134 17 6 4.0968 -8.2418 0.1301 18 1 5.0868 -7.8426 0.2941 19 6 3.9071 -9.6052 0.0532 20 7 2.7013 -10.0913 -0.1450 21 14 5.3630 -10.7622 0.2304 22 1 5.9951 -10.5623 1.5592 23 1 4.8963 -12.1669 0.1110 24 1 6.3546 -10.4771 -0.8375 25 1 -0.3633 -0.1056 1.0223 26 1 -0.3634 -0.8325 -0.6024 27 1 -0.3634 0.9379 -0.4196 28 1 1.8922 2.1161 0.0004 29 1 4.6232 2.6337 0.0121 30 1 4.4334 -1.3700 -0.0084 31 1 3.6108 -3.3400 0.2324 32 1 1.4822 -5.1228 0.7494 33 1 1.7469 -5.0602 -1.0097 34 1 4.7672 -4.5363 -0.9010 35 1 5.2741 -6.2427 -0.8861 36 1 3.9608 -5.7139 -1.9646 37 1 3.3263 -5.8647 2.2638 38 1 4.9034 -6.3307 1.5836 39 1 4.3967 -4.6243 1.5682 40 1 2.1941 -7.5180 0.7702 41 1 2.4587 -7.4546 -0.9889 42 1 2.5678 -11.0505 -0.1988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832744845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:20 Heat of formation + Delta-G solvation = -62.095367 kcal Electronic energy + Delta-G solvation = -23062.041191 eV Core-core repulsion = 19620.766662 eV Total energy + Delta-G solvation = -3441.274529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.61101 -40.52077 -39.38181 -38.55490 -35.42195 -34.26971 -33.59726 -31.05770 -29.07454 -28.04501 -28.00301 -27.55046 -25.30817 -24.64178 -23.00651 -20.97083 -20.77533 -19.78659 -18.76027 -18.36246 -17.19510 -16.90955 -16.76586 -16.46430 -16.21219 -16.02943 -15.49818 -15.07569 -15.03226 -14.89753 -14.84707 -14.47558 -14.30110 -13.95618 -13.80693 -13.37591 -13.17679 -13.11161 -12.85897 -12.76499 -12.62301 -12.35350 -12.24644 -12.02809 -11.57022 -11.30933 -10.97327 -10.88218 -10.62353 -10.51172 -10.21601 -9.91356 -9.33451 -8.14626 -6.22387 0.42635 0.54569 1.42270 1.44250 1.51320 1.56661 2.13003 2.31133 2.45022 2.48075 3.19784 3.54875 3.74862 3.86612 3.95739 4.04158 4.13918 4.19067 4.26174 4.39672 4.50641 4.64986 4.67980 4.72090 4.77268 4.80843 4.92213 5.05803 5.09131 5.17337 5.32167 5.40913 5.47452 5.49456 5.52175 5.55653 5.69659 5.77205 5.88661 6.14771 6.29453 6.46334 6.80468 6.92149 7.08876 7.45324 8.97696 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023637 B = 0.003212 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.316608 B = 8714.277340 C = 9691.755280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.403 5.403 3 C 0.123 3.877 4 C -0.316 4.316 5 C 0.419 3.581 6 O -0.529 6.529 7 C -0.088 4.088 8 C -0.088 4.088 9 C 0.578 3.422 10 O -0.586 6.586 11 N -0.701 5.701 12 C 0.145 3.855 13 C -0.065 4.065 14 C -0.123 4.123 15 C -0.123 4.123 16 C 0.042 3.958 17 C -0.516 4.516 18 H 0.071 0.929 19 C -0.003 4.003 20 N -0.938 5.938 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.290 1.290 24 H -0.267 1.267 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.242 0.758 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.411 0.589 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.057 0.943 39 H 0.064 0.936 40 H -0.012 1.012 41 H -0.012 1.012 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 28.164 0.814 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.074 5.074 3 C -0.021 4.021 4 C -0.323 4.323 5 C 0.283 3.717 6 O -0.407 6.407 7 C -0.113 4.113 8 C -0.198 4.198 9 C 0.367 3.633 10 O -0.469 6.469 11 N -0.352 5.352 12 C 0.021 3.979 13 C -0.065 4.065 14 C -0.180 4.180 15 C -0.180 4.180 16 C 0.005 3.995 17 C -0.554 4.554 18 H 0.089 0.911 19 C -0.200 4.200 20 N -0.579 5.579 21 Si 0.783 3.217 22 H -0.192 1.192 23 H -0.216 1.216 24 H -0.192 1.192 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.150 0.850 28 H 0.258 0.742 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.249 0.751 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.006 0.994 41 H 0.007 0.993 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.160 27.469 0.718 27.563 hybrid contribution 0.478 -1.606 0.060 1.676 sum -1.681 25.863 0.778 25.929 Atomic orbital electron populations 1.22535 0.74126 1.06493 1.04871 1.43917 1.08388 1.04805 1.50257 1.23468 0.88404 0.93421 0.96793 1.21078 0.96138 0.94130 1.20912 1.23831 0.84587 0.95878 0.67447 1.90548 1.29799 1.81148 1.39191 1.21506 0.94304 0.96366 0.99126 1.19526 0.91005 0.87434 1.21793 1.17423 0.85377 0.84475 0.75993 1.90752 1.17090 1.85913 1.53107 1.45693 1.11727 1.05401 1.72378 1.21272 0.96740 0.79385 1.00464 1.20723 0.94191 0.94702 0.96925 1.21707 0.98706 1.00647 0.96967 1.21702 1.00535 1.00796 0.94959 1.18944 0.95448 0.90602 0.94526 1.21563 0.94967 0.91218 1.47682 0.91069 1.25919 0.98166 1.00498 0.95424 1.70101 1.23138 1.13088 1.51566 0.85613 0.79537 0.77449 0.79137 1.19212 1.21578 1.19207 0.89839 0.90461 0.84962 0.74171 0.82651 0.83711 0.75099 0.93021 0.93016 0.91713 0.92429 0.94138 0.94178 0.92418 0.91737 0.99368 0.99340 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 10.43 127.77 1.33 2.08 16 2 N -0.40 -6.69 3.12 -533.76 -1.67 -8.35 16 3 C 0.12 1.16 11.37 84.43 0.96 2.12 16 4 C -0.32 -4.99 6.13 -20.18 -0.12 -5.12 16 5 C 0.42 5.88 11.68 70.01 0.82 6.69 16 6 O -0.53 -13.33 17.74 -3.16 -0.06 -13.39 16 7 C -0.09 -1.94 10.09 22.63 0.23 -1.71 16 8 C -0.09 -2.11 6.81 39.99 0.27 -1.84 16 9 C 0.58 17.78 7.78 86.49 0.67 18.45 16 10 O -0.59 -21.38 14.68 -4.28 -0.06 -21.45 16 11 N -0.70 -21.01 4.93 -466.93 -2.30 -23.31 16 12 C 0.15 5.29 4.57 86.38 0.39 5.69 16 13 C -0.06 -2.52 0.54 -52.18 -0.03 -2.55 16 14 C -0.12 -4.33 8.05 71.98 0.58 -3.75 16 15 C -0.12 -4.32 8.05 71.98 0.58 -3.74 16 16 C 0.04 2.17 4.04 29.85 0.12 2.29 16 17 C -0.52 -27.98 7.65 25.60 0.20 -27.79 16 18 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 19 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 20 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 21 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.50 6.47 -2.39 -0.02 1.48 16 27 H 0.13 0.41 8.11 -2.39 -0.02 0.39 16 28 H 0.24 -0.72 8.06 -2.91 -0.02 -0.74 16 29 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 30 H 0.15 3.24 7.42 -2.91 -0.02 3.22 16 31 H 0.41 10.56 5.04 -92.70 -0.47 10.09 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 35 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 2.16 6.62 -2.39 -0.02 2.15 16 39 H 0.06 1.81 6.86 -2.39 -0.02 1.80 16 40 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.18 348.35 5.25 -73.93 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.56 Total: 12.38 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 6.46 Total: -8.88 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -3.68 Total: -88.65 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.12 Total: -34.83 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -79.18 5.25 -73.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832744845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.837 kcal (2) G-P(sol) polarization free energy of solvation -79.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds