Wall clock time and date at job start Tue Mar 31 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 C 1.52995 * 109.47195 * 240.00049 * 2 1 3 5 5 C 1.50704 * 109.47329 * 59.99686 * 4 2 1 6 6 H 1.08005 * 119.99567 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00033 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99793 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00210 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47494 * 89.99320 * 9 7 5 11 11 H 1.48497 * 109.47219 * 209.99576 * 9 7 5 12 12 H 1.48499 * 109.47064 * 329.99681 * 9 7 5 13 13 C 1.52999 * 109.46749 * 119.99938 * 2 1 3 14 14 O 1.45206 * 109.47320 * 299.99785 * 13 2 1 15 15 C 1.34729 * 116.99848 * 180.02562 * 14 13 2 16 16 O 1.21484 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.47579 * 119.99772 * 180.02562 * 15 14 13 18 18 C 1.41448 * 126.51988 * 180.02562 * 17 15 14 19 19 C 1.35421 * 105.43589 * 180.18644 * 18 17 15 20 20 N 1.34888 * 107.69234 * 359.74845 * 19 18 17 21 21 N 1.29365 * 109.59104 * 0.19132 * 20 19 18 22 22 C 1.47454 * 110.69154 * 179.91293 * 20 19 18 23 23 C 1.54326 * 105.62925 * 17.59552 * 22 20 19 24 24 C 1.51347 * 141.94791 * 180.95781 * 19 18 17 25 25 H 1.08999 * 109.47418 * 299.99868 * 1 2 3 26 26 H 1.08997 * 109.47071 * 59.99856 * 1 2 3 27 27 H 1.09001 * 109.47417 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47400 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46818 * 300.00293 * 3 2 1 30 30 H 1.09002 * 109.47124 * 59.99341 * 3 2 1 31 31 H 1.08999 * 109.47055 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46756 * 300.00182 * 4 2 1 33 33 H 0.97003 * 119.99713 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47001 * 180.02562 * 13 2 1 35 35 H 1.08993 * 109.47407 * 60.00061 * 13 2 1 36 36 H 1.08002 * 127.27743 * 359.91616 * 18 17 15 37 37 H 1.08997 * 110.22062 * 136.63203 * 22 20 19 38 38 H 1.08999 * 110.21484 * 258.47702 * 22 20 19 39 39 H 1.08995 * 110.96789 * 92.21730 * 23 22 20 40 40 H 1.09000 * 110.96590 * 215.97142 * 23 22 20 41 41 H 1.08997 * 110.65818 * 43.93493 * 24 19 18 42 42 H 1.09003 * 110.38371 * 281.36825 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4332 0.1386 -4.8057 9 14 2.9452 -2.0003 -3.9033 10 1 2.0868 -3.2112 -3.9492 11 1 3.7375 -1.9075 -5.1559 12 1 3.8653 -2.0897 -2.7411 13 6 2.0400 -0.7212 1.2493 14 8 1.5560 -0.0367 2.4349 15 6 1.9184 -0.5484 3.6273 16 8 2.6199 -1.5391 3.6753 17 6 1.4631 0.0946 4.8753 18 6 1.7593 -0.3228 6.1939 19 6 1.1278 0.5613 7.0022 20 7 0.4966 1.4572 6.2160 21 7 0.7049 1.1660 4.9728 22 6 -0.2182 2.4550 7.0330 23 6 0.3957 2.3529 8.4452 24 6 0.9075 0.8947 8.4620 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7216 -1.2489 32 1 1.6767 -1.7489 -1.2492 33 1 1.6676 -0.1928 -5.6867 34 1 3.1299 -0.7209 1.2495 35 1 1.6766 -1.7488 1.2493 36 1 2.3585 -1.1703 6.4927 37 1 -0.0642 3.4547 6.6269 38 1 -1.2826 2.2222 7.0660 39 1 1.2194 3.0567 8.5643 40 1 -0.3627 2.5089 9.2124 41 1 1.8426 0.8248 9.0177 42 1 0.1576 0.2319 8.8938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835385624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:16 Heat of formation + Delta-G solvation = -10.081066 kcal Electronic energy + Delta-G solvation = -23034.509747 eV Core-core repulsion = 19595.490728 eV Total energy + Delta-G solvation = -3439.019019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.14255 -39.99667 -37.28905 -36.71211 -35.36111 -32.25303 -32.08018 -29.93092 -27.95759 -27.67542 -26.52871 -26.35413 -24.25678 -22.39644 -21.97075 -21.12082 -19.91335 -18.12837 -17.39398 -17.06673 -16.79844 -16.51982 -16.02617 -15.92967 -14.83897 -14.33390 -14.15934 -13.80785 -13.72322 -13.59594 -13.29309 -13.16150 -12.69509 -12.46068 -12.30821 -12.19974 -12.17473 -11.71811 -11.27820 -10.97476 -10.93747 -10.93050 -10.62902 -10.52263 -10.33643 -10.26012 -9.78417 -9.68355 -9.46136 -9.37017 -9.20538 -8.93913 -8.49394 -5.99693 -3.96671 1.32030 1.79871 1.93618 2.90716 3.20296 3.34597 3.42243 3.46347 3.53775 3.96835 4.13709 4.32467 4.49332 4.50209 4.80079 4.84717 5.00552 5.12083 5.18870 5.31372 5.32529 5.35081 5.46642 5.49774 5.62683 5.78591 5.99563 6.16438 6.18277 6.30672 6.36505 6.60982 6.61147 6.75895 6.77567 7.04596 7.13964 7.16033 7.28069 7.41579 7.69379 7.81876 8.03943 8.58610 9.05322 9.62539 11.13086 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.002941 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.688989 B = 9518.669179 C =10045.505143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.048 4.048 3 C -0.128 4.128 4 C -0.003 4.003 5 C -0.508 4.508 6 H 0.080 0.920 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.076 3.924 14 O -0.332 6.332 15 C 0.552 3.448 16 O -0.505 6.505 17 C 0.007 3.993 18 C -0.161 4.161 19 C -0.013 4.013 20 N -0.306 5.306 21 N -0.212 5.212 22 C 0.120 3.880 23 C -0.131 4.131 24 C -0.058 4.058 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.262 0.738 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.163 0.837 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 4.071 29.948 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.048 4.048 3 C -0.185 4.185 4 C -0.041 4.041 5 C -0.545 4.545 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 O -0.247 6.247 15 C 0.394 3.606 16 O -0.391 6.391 17 C -0.151 4.151 18 C -0.188 4.188 19 C -0.137 4.137 20 N -0.096 5.096 21 N -0.047 5.047 22 C 0.001 3.999 23 C -0.170 4.170 24 C -0.097 4.097 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.181 0.819 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.099 4.722 28.951 29.497 hybrid contribution 1.061 -1.583 0.034 1.906 sum -2.037 3.138 28.986 29.226 Atomic orbital electron populations 1.21732 0.94353 1.00982 1.01432 1.20570 0.96517 0.96246 0.91489 1.21726 0.99861 0.95460 1.01430 1.19633 0.96311 0.95562 0.92564 1.21052 1.31730 1.13357 0.88409 0.90209 1.24988 0.95747 0.96764 0.95947 1.69904 1.46002 1.40560 0.97843 0.86862 0.81342 0.83958 0.77643 1.20354 1.21466 1.19017 1.23575 0.98999 0.95992 0.81195 1.86639 1.68831 1.55074 1.14113 1.19474 0.77016 0.81089 0.83015 1.90843 1.35612 1.24842 1.87830 1.20795 1.04734 0.97050 0.92525 1.20897 1.05791 1.02839 0.89313 1.22397 1.01580 0.95110 0.94602 1.47021 1.36644 1.23081 1.02864 1.73731 1.16178 1.15364 0.99465 1.22662 0.96817 0.91498 0.88899 1.22796 1.02215 0.97185 0.94756 1.20768 1.03458 0.95944 0.89530 0.93832 0.91072 0.93856 0.93849 0.91072 0.93830 0.96330 0.96781 0.92808 0.91435 0.91438 0.81901 0.87956 0.88166 0.89129 0.87617 0.88545 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.08 37.16 0.30 -2.27 16 2 C -0.05 -1.00 0.61 -154.51 -0.09 -1.09 16 3 C -0.13 -2.57 8.08 37.16 0.30 -2.27 16 4 C 0.00 -0.08 3.11 -27.88 -0.09 -0.17 16 5 C -0.51 -14.15 8.20 -34.44 -0.28 -14.43 16 6 H 0.08 2.36 5.92 -52.48 -0.31 2.05 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 9 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.08 1.44 4.33 37.16 0.16 1.60 16 14 O -0.33 -6.17 8.89 -40.57 -0.36 -6.53 16 15 C 0.55 9.79 7.97 34.54 0.28 10.07 16 16 O -0.50 -9.64 16.71 -19.25 -0.32 -9.97 16 17 C 0.01 0.11 7.16 -82.92 -0.59 -0.48 16 18 C -0.16 -1.98 10.81 -39.37 -0.43 -2.41 16 19 C -0.01 -0.12 7.47 -81.94 -0.61 -0.74 16 20 N -0.31 -3.30 4.40 -55.55 -0.24 -3.54 16 21 N -0.21 -3.16 12.24 33.35 0.41 -2.76 16 22 C 0.12 0.63 7.78 -2.83 -0.02 0.61 16 23 C -0.13 -0.31 7.17 -25.22 -0.18 -0.49 16 24 C -0.06 -0.25 6.85 -26.75 -0.18 -0.44 16 25 H 0.04 0.81 7.68 -51.93 -0.40 0.41 16 26 H 0.07 1.54 6.62 -51.93 -0.34 1.20 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.54 6.62 -51.93 -0.34 1.20 16 30 H 0.04 0.81 7.68 -51.93 -0.40 0.41 16 31 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 32 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 40 H 0.11 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -34.85 344.57 -7.14 -42.00 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -6.38 Total: -3.97 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.54 Total: -10.67 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.94 Total: -33.34 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.68 Total: -16.50 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.85 -7.14 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835385624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.917 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds