Wall clock time and date at job start Tue Mar 31 2020 07:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 C 1.52995 * 109.47195 * 240.00049 * 2 1 3 5 5 C 1.50704 * 109.47329 * 59.99686 * 4 2 1 6 6 H 1.08005 * 119.99567 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00033 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99793 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00210 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47494 * 89.99320 * 9 7 5 11 11 H 1.48497 * 109.47219 * 209.99576 * 9 7 5 12 12 H 1.48499 * 109.47064 * 329.99681 * 9 7 5 13 13 C 1.52999 * 109.46749 * 119.99938 * 2 1 3 14 14 O 1.45206 * 109.47320 * 299.99785 * 13 2 1 15 15 C 1.34729 * 116.99848 * 180.02562 * 14 13 2 16 16 O 1.21484 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.47579 * 119.99772 * 180.02562 * 15 14 13 18 18 C 1.41448 * 126.51988 * 180.02562 * 17 15 14 19 19 C 1.35421 * 105.43589 * 180.18644 * 18 17 15 20 20 N 1.34888 * 107.69234 * 359.74845 * 19 18 17 21 21 N 1.29365 * 109.59104 * 0.19132 * 20 19 18 22 22 C 1.47454 * 110.69154 * 179.91293 * 20 19 18 23 23 C 1.54326 * 105.62925 * 17.59552 * 22 20 19 24 24 C 1.51347 * 141.94791 * 180.95781 * 19 18 17 25 25 H 1.08999 * 109.47418 * 299.99868 * 1 2 3 26 26 H 1.08997 * 109.47071 * 59.99856 * 1 2 3 27 27 H 1.09001 * 109.47417 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47400 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46818 * 300.00293 * 3 2 1 30 30 H 1.09002 * 109.47124 * 59.99341 * 3 2 1 31 31 H 1.08999 * 109.47055 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46756 * 300.00182 * 4 2 1 33 33 H 0.97003 * 119.99713 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47001 * 180.02562 * 13 2 1 35 35 H 1.08993 * 109.47407 * 60.00061 * 13 2 1 36 36 H 1.08002 * 127.27743 * 359.91616 * 18 17 15 37 37 H 1.08997 * 110.22062 * 136.63203 * 22 20 19 38 38 H 1.08999 * 110.21484 * 258.47702 * 22 20 19 39 39 H 1.08995 * 110.96789 * 92.21730 * 23 22 20 40 40 H 1.09000 * 110.96590 * 215.97142 * 23 22 20 41 41 H 1.08997 * 110.65818 * 43.93493 * 24 19 18 42 42 H 1.09003 * 110.38371 * 281.36825 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4332 0.1386 -4.8057 9 14 2.9452 -2.0003 -3.9033 10 1 2.0868 -3.2112 -3.9492 11 1 3.7375 -1.9075 -5.1559 12 1 3.8653 -2.0897 -2.7411 13 6 2.0400 -0.7212 1.2493 14 8 1.5560 -0.0367 2.4349 15 6 1.9184 -0.5484 3.6273 16 8 2.6199 -1.5391 3.6753 17 6 1.4631 0.0946 4.8753 18 6 1.7593 -0.3228 6.1939 19 6 1.1278 0.5613 7.0022 20 7 0.4966 1.4572 6.2160 21 7 0.7049 1.1660 4.9728 22 6 -0.2182 2.4550 7.0330 23 6 0.3957 2.3529 8.4452 24 6 0.9075 0.8947 8.4620 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7216 -1.2489 32 1 1.6767 -1.7489 -1.2492 33 1 1.6676 -0.1928 -5.6867 34 1 3.1299 -0.7209 1.2495 35 1 1.6766 -1.7488 1.2493 36 1 2.3585 -1.1703 6.4927 37 1 -0.0642 3.4547 6.6269 38 1 -1.2826 2.2222 7.0660 39 1 1.2194 3.0567 8.5643 40 1 -0.3627 2.5089 9.2124 41 1 1.8426 0.8248 9.0177 42 1 0.1576 0.2319 8.8938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835385624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:15 Heat of formation + Delta-G solvation = -31.708803 kcal Electronic energy + Delta-G solvation = -23035.447596 eV Core-core repulsion = 19595.490728 eV Total energy + Delta-G solvation = -3439.956868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.97198 -41.40211 -38.82552 -37.35022 -36.93955 -34.41385 -32.84339 -30.75848 -29.87330 -28.43127 -28.03456 -27.90093 -25.48183 -24.15352 -22.49920 -22.03088 -21.06618 -19.85881 -18.91662 -18.28756 -18.05904 -17.58494 -17.27618 -16.99708 -16.24078 -15.55308 -15.52805 -15.19582 -14.81381 -14.77516 -14.27638 -14.15419 -14.04657 -13.99235 -13.84905 -13.15547 -13.07442 -12.88347 -12.73201 -12.47639 -12.31610 -12.19858 -12.04813 -11.97107 -11.88496 -11.86174 -11.72198 -11.39855 -11.26495 -10.97055 -10.71939 -10.22670 -10.02435 -8.23350 -6.24638 0.17031 0.99487 1.15297 1.36427 1.38279 1.49097 1.74405 1.99843 2.38574 3.06936 3.11259 3.38927 3.57484 3.84522 3.89014 3.91147 4.02393 4.10031 4.14868 4.34167 4.46557 4.51209 4.53561 4.59495 4.63620 4.82990 4.92219 4.93903 4.95011 5.03833 5.06040 5.17106 5.20029 5.26031 5.32381 5.33707 5.36175 5.49497 5.59004 5.59104 5.71934 6.35875 6.53834 6.81459 6.93013 7.37559 8.92451 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.002941 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.688989 B = 9518.669179 C =10045.505143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 C -0.120 4.120 4 C -0.002 4.002 5 C -0.505 4.505 6 H 0.049 0.951 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.938 3.062 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.250 1.250 13 C 0.082 3.918 14 O -0.338 6.338 15 C 0.552 3.448 16 O -0.526 6.526 17 C -0.026 4.026 18 C -0.183 4.183 19 C 0.002 3.998 20 N -0.302 5.302 21 N -0.249 5.249 22 C 0.101 3.899 23 C -0.115 4.115 24 C -0.057 4.057 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.171 0.829 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.142 0.858 41 H 0.114 0.886 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 3.847 33.667 33.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.047 4.047 3 C -0.177 4.177 4 C -0.039 4.039 5 C -0.543 4.543 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.173 1.173 13 C 0.009 3.991 14 O -0.253 6.253 15 C 0.395 3.605 16 O -0.414 6.414 17 C -0.182 4.182 18 C -0.211 4.211 19 C -0.123 4.123 20 N -0.094 5.094 21 N -0.087 5.087 22 C -0.015 4.015 23 C -0.153 4.153 24 C -0.095 4.095 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.188 0.812 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.116 0.884 40 H 0.160 0.840 41 H 0.133 0.867 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.008 4.511 32.697 33.144 hybrid contribution 0.919 -1.367 -0.982 1.918 sum -2.088 3.144 31.715 31.939 Atomic orbital electron populations 1.21638 0.94047 1.01182 1.00887 1.20453 0.96761 0.96289 0.91242 1.21633 1.00109 0.95107 1.00890 1.19567 0.96305 0.95653 0.92371 1.21285 1.30570 1.12398 0.90041 0.93275 1.25852 0.97423 1.00112 0.95653 1.70047 1.48017 1.42680 0.98477 0.85844 0.79792 0.80062 0.78102 1.19470 1.21226 1.17333 1.23322 0.99087 0.95797 0.80897 1.86624 1.69064 1.55209 1.14406 1.19885 0.76480 0.80877 0.83217 1.90810 1.36733 1.25830 1.88063 1.20687 1.06711 0.98370 0.92389 1.21113 1.07155 1.04213 0.88591 1.23168 0.98927 0.93143 0.97047 1.47650 1.35925 1.23824 1.01966 1.73591 1.17167 1.15764 1.02134 1.23291 0.97749 0.90767 0.89739 1.22899 1.03232 0.95798 0.93408 1.21068 1.05179 0.97510 0.85787 0.92492 0.93363 0.93286 0.93325 0.93355 0.92487 0.96052 0.96191 0.92722 0.91077 0.90997 0.81182 0.87276 0.86395 0.88415 0.83983 0.86732 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 8.08 71.98 0.58 -4.30 16 2 C -0.05 -1.96 0.61 -52.18 -0.03 -2.00 16 3 C -0.12 -4.88 8.08 71.98 0.58 -4.30 16 4 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 5 C -0.50 -28.72 8.20 25.60 0.21 -28.51 16 6 H 0.05 3.04 5.92 -2.91 -0.02 3.02 16 7 C 0.01 0.35 5.47 84.65 0.46 0.81 16 8 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 9 Si 0.94 45.18 27.47 68.60 1.88 47.06 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 13 C 0.08 3.10 4.33 71.98 0.31 3.41 16 14 O -0.34 -12.59 8.89 -56.39 -0.50 -13.09 16 15 C 0.55 19.81 7.97 70.29 0.56 20.37 16 16 O -0.53 -20.32 16.71 19.89 0.33 -19.98 16 17 C -0.03 -0.80 7.16 42.43 0.30 -0.50 16 18 C -0.18 -4.40 10.81 22.41 0.24 -4.16 16 19 C 0.00 0.04 7.47 41.64 0.31 0.35 16 20 N -0.30 -6.00 4.40 -329.66 -1.45 -7.45 16 21 N -0.25 -7.38 12.24 -48.40 -0.59 -7.97 16 22 C 0.10 0.74 7.78 86.65 0.67 1.41 16 23 C -0.12 0.00 7.17 31.57 0.23 0.23 16 24 C -0.06 -0.25 6.85 30.58 0.21 -0.04 16 25 H 0.06 2.13 7.68 -2.39 -0.02 2.11 16 26 H 0.05 2.15 6.62 -2.39 -0.02 2.14 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 2.16 6.62 -2.39 -0.02 2.14 16 30 H 0.06 2.13 7.68 -2.39 -0.02 2.11 16 31 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 32 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.14 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -78.26 344.57 5.66 -72.60 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 0.96 Total: 5.75 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 4.74 Total: -17.20 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.74 Total: -75.13 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.17 Total: -33.07 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -78.26 5.66 -72.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835385624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.887 kcal (2) G-P(sol) polarization free energy of solvation -78.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds