Wall clock time and date at job start Tue Mar 31 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47063 * 240.00463 * 2 1 3 5 5 C 1.50708 * 109.47508 * 59.99927 * 4 2 1 6 6 H 1.07999 * 119.99199 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00158 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46874 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46998 * 120.00171 * 9 7 5 12 12 H 1.48494 * 109.47430 * 240.00277 * 9 7 5 13 13 C 1.52991 * 109.47196 * 120.00265 * 2 1 3 14 14 O 1.45202 * 109.47101 * 299.99815 * 13 2 1 15 15 C 1.34759 * 116.99661 * 179.97438 * 14 13 2 16 16 O 1.21520 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.47289 * 119.99715 * 179.97438 * 15 14 13 18 18 C 1.41258 * 126.45022 * 359.97438 * 17 15 14 19 19 N 1.30270 * 108.01661 * 179.97438 * 18 17 15 20 20 N 1.40374 * 109.11213 * 359.94242 * 19 18 17 21 21 C 1.34183 * 108.14773 * 0.18735 * 20 19 18 22 22 C 1.51391 * 110.37862 * 179.74719 * 21 20 19 23 23 C 1.54564 * 104.14271 * 343.53127 * 22 21 20 24 24 C 1.47260 * 140.94648 * 180.30202 * 20 19 18 25 25 H 1.08999 * 109.47137 * 300.00196 * 1 2 3 26 26 H 1.09009 * 109.46891 * 59.99620 * 1 2 3 27 27 H 1.08991 * 109.46894 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47136 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47223 * 300.00156 * 3 2 1 30 30 H 1.09000 * 109.47121 * 60.00428 * 3 2 1 31 31 H 1.09002 * 109.47359 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47077 * 299.99845 * 4 2 1 33 33 H 0.97004 * 119.99750 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47341 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.47320 * 59.99729 * 13 2 1 36 36 H 1.07992 * 125.99162 * 359.89722 * 18 17 15 37 37 H 1.09001 * 110.49393 * 224.86394 * 22 21 20 38 38 H 1.09003 * 110.49726 * 102.20018 * 22 21 20 39 39 H 1.09010 * 110.99136 * 266.93783 * 23 22 21 40 40 H 1.08998 * 111.02659 * 143.13610 * 23 22 21 41 41 H 1.09002 * 110.22996 * 77.95407 * 24 20 19 42 42 H 1.09000 * 110.22667 * 316.08418 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4813 -3.7320 8 7 2.6273 -1.5506 -3.8527 9 14 1.2479 0.3989 -5.2572 10 1 0.4225 1.5653 -4.8530 11 1 2.4027 0.8665 -6.0654 12 1 0.4237 -0.5350 -6.0657 13 6 2.0400 -0.7213 1.2491 14 8 1.5560 -0.0368 2.4347 15 6 1.9177 -0.5493 3.6274 16 8 2.6188 -1.5407 3.6753 17 6 1.4643 0.0930 4.8729 18 6 0.6522 1.2442 4.9761 19 7 0.4720 1.4981 6.2410 20 7 1.1495 0.5343 7.0043 21 6 1.7545 -0.3166 6.1615 22 6 2.5083 -1.3777 6.9346 23 6 2.6172 -0.7982 8.3634 24 6 1.4064 0.1584 8.4048 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7216 -1.2491 32 1 1.6766 -1.7488 -1.2493 33 1 2.8622 -1.8815 -4.7338 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2491 36 1 0.2521 1.8146 4.1510 37 1 3.4997 -1.5291 6.5075 38 1 1.9488 -2.3132 6.9438 39 1 3.5514 -0.2515 8.4929 40 1 2.5200 -1.5839 9.1126 41 1 0.5382 -0.3504 8.8238 42 1 1.6451 1.0433 8.9948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835386399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:23 Heat of formation + Delta-G solvation = -17.303960 kcal Electronic energy + Delta-G solvation = -23140.975908 eV Core-core repulsion = 19701.643680 eV Total energy + Delta-G solvation = -3439.332228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.08882 -39.73209 -37.02271 -36.67600 -35.18262 -32.29897 -31.41705 -29.78687 -28.12197 -27.09140 -26.33712 -26.13023 -23.36709 -22.68399 -22.24084 -20.90640 -19.63169 -18.17268 -17.62759 -16.91268 -16.34962 -15.96090 -15.85246 -14.85124 -14.70387 -14.49274 -14.22114 -14.09987 -13.74146 -13.39021 -13.36697 -13.00041 -12.48027 -12.23689 -12.22258 -12.09826 -12.02100 -11.69497 -11.19251 -11.15337 -10.93757 -10.77594 -10.54688 -10.34689 -10.19424 -10.17334 -10.09012 -9.66086 -9.63005 -9.16255 -8.88712 -8.88516 -8.33557 -5.97615 -3.98288 1.22803 1.83995 1.97346 3.10826 3.30426 3.33071 3.41001 3.44494 3.58392 4.00305 4.18534 4.28522 4.48223 4.67533 4.91622 4.92644 5.03678 5.08690 5.29620 5.38373 5.39237 5.41385 5.58834 5.60718 5.63913 5.90447 6.13322 6.21593 6.27711 6.37170 6.45779 6.59033 6.73013 6.77777 6.94131 7.17611 7.18580 7.20472 7.38025 7.65932 7.77980 8.01448 8.17358 8.44180 9.06474 9.64685 11.14153 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.041318 B = 0.002893 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.516281 B = 9677.651267 C =10135.608293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.082 3.918 14 O -0.346 6.346 15 C 0.537 3.463 16 O -0.525 6.525 17 C -0.261 4.261 18 C 0.108 3.892 19 N -0.280 5.280 20 N -0.384 5.384 21 C 0.139 3.861 22 C -0.072 4.072 23 C -0.133 4.133 24 C 0.126 3.874 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.206 0.794 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 2.385 25.439 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.009 3.991 14 O -0.262 6.262 15 C 0.382 3.618 16 O -0.416 6.416 17 C -0.274 4.274 18 C -0.079 4.079 19 N -0.098 5.098 20 N -0.163 5.163 21 C 0.006 3.994 22 C -0.111 4.111 23 C -0.172 4.172 24 C 0.006 3.994 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.222 0.778 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.864 2.916 26.331 26.557 hybrid contribution 0.144 -0.246 -1.660 1.684 sum -1.720 2.670 24.671 24.874 Atomic orbital electron populations 1.21712 0.94858 1.00910 1.00808 1.20802 0.96127 0.96194 0.92718 1.21713 1.00003 0.95763 1.00806 1.19134 0.96378 0.95304 0.89482 1.21203 1.30997 1.12040 0.90292 0.92009 1.25014 0.95344 0.95110 0.99113 1.69979 1.37124 1.23141 1.23317 0.86569 0.78602 0.79703 0.83334 1.19709 1.21147 1.21142 1.23467 0.98858 0.95877 0.80914 1.86518 1.69601 1.55666 1.14447 1.19929 0.76939 0.81295 0.83592 1.90800 1.36715 1.25775 1.88268 1.18627 1.14996 1.04103 0.89659 1.24308 0.94783 0.94542 0.94285 1.77221 1.18778 1.10668 1.03119 1.50156 1.37940 1.21007 1.07181 1.22519 0.93784 0.92458 0.90664 1.21048 1.01938 0.95836 0.92252 1.22883 0.97833 0.99022 0.97428 1.22481 0.99461 0.99977 0.77523 0.94126 0.91649 0.93809 0.93812 0.91645 0.94132 0.96348 0.96349 0.93117 0.91701 0.91697 0.77785 0.87470 0.87722 0.89089 0.87540 0.88785 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 2 C -0.06 -1.19 0.61 -154.51 -0.09 -1.29 16 3 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.75 7.65 -34.44 -0.26 -14.01 16 6 H 0.06 1.62 5.68 -52.49 -0.30 1.32 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.08 1.57 4.33 37.15 0.16 1.73 16 14 O -0.35 -6.02 8.73 -40.65 -0.35 -6.37 16 15 C 0.54 9.03 7.95 34.41 0.27 9.31 16 16 O -0.52 -9.86 16.69 -19.28 -0.32 -10.18 16 17 C -0.26 -3.70 6.13 -105.05 -0.64 -4.34 16 18 C 0.11 1.39 11.86 -17.07 -0.20 1.19 16 19 N -0.28 -3.63 12.63 30.82 0.39 -3.24 16 20 N -0.38 -4.15 4.82 -55.07 -0.27 -4.41 16 21 C 0.14 1.63 7.31 -81.21 -0.59 1.04 16 22 C -0.07 -0.54 6.86 -26.72 -0.18 -0.73 16 23 C -0.13 -0.52 7.18 -25.19 -0.18 -0.70 16 24 C 0.13 0.71 7.77 -2.91 -0.02 0.69 16 25 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 26 H 0.06 1.32 6.62 -51.92 -0.34 0.97 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 30 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.21 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -33.77 348.65 -7.36 -41.12 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.41 Total: -3.48 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.36 Total: -9.16 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.86 Total: -33.63 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.68 Total: -16.56 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.77 -7.36 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.820 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds