Wall clock time and date at job start Tue Mar 31 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47063 * 240.00463 * 2 1 3 5 5 C 1.50708 * 109.47508 * 59.99927 * 4 2 1 6 6 H 1.07999 * 119.99199 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00158 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46874 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46998 * 120.00171 * 9 7 5 12 12 H 1.48494 * 109.47430 * 240.00277 * 9 7 5 13 13 C 1.52991 * 109.47196 * 120.00265 * 2 1 3 14 14 O 1.45202 * 109.47101 * 299.99815 * 13 2 1 15 15 C 1.34759 * 116.99661 * 179.97438 * 14 13 2 16 16 O 1.21520 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.47289 * 119.99715 * 179.97438 * 15 14 13 18 18 C 1.41258 * 126.45022 * 359.97438 * 17 15 14 19 19 N 1.30270 * 108.01661 * 179.97438 * 18 17 15 20 20 N 1.40374 * 109.11213 * 359.94242 * 19 18 17 21 21 C 1.34183 * 108.14773 * 0.18735 * 20 19 18 22 22 C 1.51391 * 110.37862 * 179.74719 * 21 20 19 23 23 C 1.54564 * 104.14271 * 343.53127 * 22 21 20 24 24 C 1.47260 * 140.94648 * 180.30202 * 20 19 18 25 25 H 1.08999 * 109.47137 * 300.00196 * 1 2 3 26 26 H 1.09009 * 109.46891 * 59.99620 * 1 2 3 27 27 H 1.08991 * 109.46894 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47136 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47223 * 300.00156 * 3 2 1 30 30 H 1.09000 * 109.47121 * 60.00428 * 3 2 1 31 31 H 1.09002 * 109.47359 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47077 * 299.99845 * 4 2 1 33 33 H 0.97004 * 119.99750 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47341 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.47320 * 59.99729 * 13 2 1 36 36 H 1.07992 * 125.99162 * 359.89722 * 18 17 15 37 37 H 1.09001 * 110.49393 * 224.86394 * 22 21 20 38 38 H 1.09003 * 110.49726 * 102.20018 * 22 21 20 39 39 H 1.09010 * 110.99136 * 266.93783 * 23 22 21 40 40 H 1.08998 * 111.02659 * 143.13610 * 23 22 21 41 41 H 1.09002 * 110.22996 * 77.95407 * 24 20 19 42 42 H 1.09000 * 110.22667 * 316.08418 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4813 -3.7320 8 7 2.6273 -1.5506 -3.8527 9 14 1.2479 0.3989 -5.2572 10 1 0.4225 1.5653 -4.8530 11 1 2.4027 0.8665 -6.0654 12 1 0.4237 -0.5350 -6.0657 13 6 2.0400 -0.7213 1.2491 14 8 1.5560 -0.0368 2.4347 15 6 1.9177 -0.5493 3.6274 16 8 2.6188 -1.5407 3.6753 17 6 1.4643 0.0930 4.8729 18 6 0.6522 1.2442 4.9761 19 7 0.4720 1.4981 6.2410 20 7 1.1495 0.5343 7.0043 21 6 1.7545 -0.3166 6.1615 22 6 2.5083 -1.3777 6.9346 23 6 2.6172 -0.7982 8.3634 24 6 1.4064 0.1584 8.4048 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7216 -1.2491 32 1 1.6766 -1.7488 -1.2493 33 1 2.8622 -1.8815 -4.7338 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2491 36 1 0.2521 1.8146 4.1510 37 1 3.4997 -1.5291 6.5075 38 1 1.9488 -2.3132 6.9438 39 1 3.5514 -0.2515 8.4929 40 1 2.5200 -1.5839 9.1126 41 1 0.5382 -0.3504 8.8238 42 1 1.6451 1.0433 8.9948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835386399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:23 Heat of formation + Delta-G solvation = -37.139627 kcal Electronic energy + Delta-G solvation = -23141.836047 eV Core-core repulsion = 19701.643680 eV Total energy + Delta-G solvation = -3440.192367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.94157 -41.10826 -38.60978 -37.36182 -36.73401 -34.38285 -32.28301 -30.50799 -29.41955 -28.70505 -27.92325 -27.54645 -25.14253 -23.74801 -23.09757 -21.79247 -20.66207 -19.81819 -18.78935 -18.33424 -17.68376 -17.40050 -17.12648 -16.49460 -15.76699 -15.50939 -15.26032 -15.11700 -14.88932 -14.68557 -14.56010 -14.16750 -13.98378 -13.84766 -13.69433 -13.08819 -12.95192 -12.69786 -12.65572 -12.53920 -12.30166 -12.29686 -12.13711 -12.09265 -11.89375 -11.79076 -11.45344 -11.32126 -11.00555 -10.86138 -10.51512 -10.40498 -9.86241 -8.13978 -6.21386 0.25565 0.95532 1.13151 1.43047 1.43982 1.56279 1.80433 2.12487 2.45798 2.99488 3.20727 3.40871 3.62014 3.83202 3.89741 3.98256 3.98480 4.09667 4.26377 4.33070 4.45930 4.49224 4.52794 4.63814 4.70764 4.78218 4.82241 4.98394 5.05773 5.06431 5.13115 5.16887 5.28617 5.45678 5.48591 5.49502 5.55850 5.57025 5.59618 5.77755 5.89747 6.30583 6.48053 6.84160 6.92862 7.46099 8.99016 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.041318 B = 0.002893 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.516281 B = 9677.651267 C =10135.608293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.119 4.119 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.072 0.928 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.258 1.258 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.092 3.908 14 O -0.341 6.341 15 C 0.537 3.463 16 O -0.553 6.553 17 C -0.298 4.298 18 C 0.109 3.891 19 N -0.302 5.302 20 N -0.380 5.380 21 C 0.141 3.859 22 C -0.078 4.078 23 C -0.115 4.115 24 C 0.111 3.889 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.067 0.933 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.219 0.781 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.143 0.857 41 H 0.115 0.885 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 3.550 27.680 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 C -0.176 4.176 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.018 3.982 14 O -0.257 6.257 15 C 0.385 3.615 16 O -0.445 6.445 17 C -0.311 4.311 18 C -0.078 4.078 19 N -0.120 5.120 20 N -0.158 5.158 21 C 0.005 3.995 22 C -0.117 4.117 23 C -0.153 4.153 24 C -0.006 4.006 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.236 0.764 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.161 0.839 41 H 0.133 0.867 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.756 4.110 28.616 29.041 hybrid contribution 0.437 -0.647 -2.194 2.329 sum -2.319 3.463 26.422 26.749 Atomic orbital electron populations 1.21644 0.93511 1.00854 1.01632 1.20620 0.97123 0.96538 0.91138 1.21645 0.99662 0.94702 1.01631 1.18993 0.94518 0.94344 0.91885 1.21570 1.30451 1.12088 0.90913 0.91001 1.25933 0.95629 0.95879 1.02660 1.70123 1.38752 1.24943 1.24107 0.85468 0.78090 0.78810 0.79125 1.18171 1.20912 1.20907 1.23106 0.98202 0.95358 0.81500 1.86496 1.69590 1.55345 1.14291 1.20390 0.76319 0.80987 0.83838 1.90777 1.38199 1.27105 1.88449 1.18647 1.17443 1.05671 0.89346 1.24540 0.94304 0.94154 0.94819 1.77134 1.19712 1.11888 1.03302 1.50651 1.36508 1.19806 1.08850 1.23128 0.93062 0.93084 0.90232 1.21289 1.01069 0.95359 0.93946 1.22954 0.97389 0.99324 0.95607 1.23039 1.01156 1.01344 0.75104 0.91445 0.92518 0.94367 0.94370 0.92513 0.91452 0.99169 0.99169 0.93089 0.92583 0.92576 0.76436 0.88094 0.86638 0.88275 0.83946 0.86736 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.08 71.98 0.58 -3.93 16 2 C -0.05 -2.24 0.61 -52.18 -0.03 -2.27 16 3 C -0.12 -4.51 8.08 71.98 0.58 -3.93 16 4 C 0.04 2.08 4.04 29.85 0.12 2.20 16 5 C -0.51 -28.11 7.65 25.60 0.20 -27.92 16 6 H 0.07 3.74 5.68 -2.91 -0.02 3.72 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.38 13.29 21.44 0.28 -57.09 16 9 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.09 3.60 4.33 71.98 0.31 3.91 16 14 O -0.34 -11.81 8.73 -56.70 -0.49 -12.30 16 15 C 0.54 18.20 7.95 70.20 0.56 18.76 16 16 O -0.55 -21.20 16.69 19.77 0.33 -20.87 16 17 C -0.30 -8.32 6.13 -20.14 -0.12 -8.44 16 18 C 0.11 2.70 11.86 85.67 1.02 3.72 16 19 N -0.30 -7.44 12.63 -56.39 -0.71 -8.15 16 20 N -0.38 -7.44 4.82 -328.15 -1.58 -9.02 16 21 C 0.14 3.11 7.31 42.43 0.31 3.42 16 22 C -0.08 -1.01 6.86 30.60 0.21 -0.80 16 23 C -0.11 -0.46 7.18 31.59 0.23 -0.23 16 24 C 0.11 0.88 7.77 86.70 0.67 1.55 16 25 H 0.07 2.18 7.68 -2.39 -0.02 2.16 16 26 H 0.06 2.23 6.62 -2.38 -0.02 2.21 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.23 6.62 -2.39 -0.02 2.21 16 30 H 0.07 2.17 7.68 -2.39 -0.02 2.16 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.22 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.14 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -74.85 348.65 5.96 -68.89 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.01 Total: 6.04 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 5.09 Total: -13.73 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.01 Total: -74.27 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.16 Total: -33.17 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -74.85 5.96 -68.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.753 kcal (2) G-P(sol) polarization free energy of solvation -74.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds