Wall clock time and date at job start Tue Mar 31 2020 07:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47005 * 2 1 4 4 C 1.50703 * 109.46847 * 240.00333 * 2 1 3 5 5 H 1.07996 * 119.99769 * 239.99505 * 4 2 1 6 6 C 1.37875 * 120.00166 * 59.99890 * 4 2 1 7 7 N 1.31519 * 120.00038 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47186 * 60.00117 * 8 6 4 10 10 H 1.48505 * 109.46893 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46994 * 299.99776 * 8 6 4 12 12 C 1.52995 * 109.47438 * 120.00419 * 2 1 3 13 13 N 1.46507 * 109.46785 * 299.99776 * 12 2 1 14 14 C 1.34778 * 119.99369 * 180.02562 * 13 12 2 15 15 O 1.21588 * 120.00701 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99301 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99761 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47033 * 179.97438 * 17 16 14 19 19 C 1.38158 * 120.02768 * 259.99936 * 18 17 16 20 20 C 1.38250 * 120.05410 * 180.02562 * 19 18 17 21 21 C 1.38281 * 120.11168 * 359.97438 * 20 19 18 22 22 C 1.38125 * 120.05855 * 359.97438 * 21 20 19 23 23 C 1.38711 * 120.02445 * 79.95997 * 18 17 16 24 24 O 1.35901 * 120.05828 * 0.03985 * 23 18 17 25 25 H 1.09000 * 109.47157 * 299.99436 * 1 2 3 26 26 H 1.08999 * 109.47566 * 59.99502 * 1 2 3 27 27 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47213 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47367 * 300.00064 * 3 2 1 30 30 H 1.09003 * 109.47406 * 60.00123 * 3 2 1 31 31 H 0.96996 * 119.99878 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47163 * 180.02562 * 12 2 1 33 33 H 1.08998 * 109.47141 * 59.99754 * 12 2 1 34 34 H 0.96989 * 119.99946 * 0.02562 * 13 12 2 35 35 H 0.96992 * 120.00298 * 359.97438 * 16 14 13 36 36 H 1.09000 * 109.46904 * 59.99935 * 17 16 14 37 37 H 1.09002 * 109.47269 * 299.99902 * 17 16 14 38 38 H 1.08004 * 119.97750 * 359.97438 * 19 18 17 39 39 H 1.07999 * 119.94133 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.97275 * 180.02562 * 21 20 19 41 41 H 1.07994 * 120.03307 * 179.73079 * 22 21 20 42 42 H 0.96701 * 113.99785 * 269.95941 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.8278 -2.5196 -4.0084 10 1 1.8276 -0.4189 -5.2205 11 1 3.8073 -1.1187 -4.0079 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5776 -1.4790 3.7810 16 7 1.4282 0.1441 4.7699 17 6 1.7822 -0.3565 6.1005 18 6 1.1585 0.5255 7.1513 19 6 1.9179 1.4920 7.7823 20 6 1.3464 2.3011 8.7467 21 6 0.0139 2.1457 9.0820 22 6 -0.7498 1.1817 8.4534 23 6 -0.1786 0.3682 7.4852 24 8 -0.9276 -0.5818 6.8660 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.7088 1.1615 -3.4844 32 1 3.1300 -0.7209 1.2493 33 1 1.6767 -1.7489 1.2491 34 1 0.9938 0.7577 2.3564 35 1 0.8702 0.9325 4.6810 36 1 2.8660 -0.3474 6.2156 37 1 1.4131 -1.3757 6.2154 38 1 2.9589 1.6151 7.5225 39 1 1.9418 3.0557 9.2391 40 1 -0.4303 2.7793 9.8354 41 1 -1.7893 1.0578 8.7186 42 1 -1.3693 -0.2728 6.0632 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838062428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:27 Heat of formation + Delta-G solvation = -76.557522 kcal Electronic energy + Delta-G solvation = -23001.757288 eV Core-core repulsion = 19559.855633 eV Total energy + Delta-G solvation = -3441.901655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29490 -40.54710 -38.24183 -37.57083 -35.91371 -34.98134 -32.93709 -31.96694 -30.71876 -27.72099 -27.54333 -27.23974 -25.89577 -23.54660 -22.47482 -22.03695 -20.57658 -19.66694 -19.22500 -17.76794 -17.36380 -17.05260 -16.87395 -16.58369 -16.33269 -16.02639 -15.29536 -15.24142 -14.82350 -14.80127 -14.66180 -14.03762 -13.95195 -13.70398 -13.18021 -13.14434 -13.07671 -12.92800 -12.66018 -12.61303 -12.37358 -12.22778 -12.12525 -11.46566 -11.44864 -11.35570 -11.14445 -10.69744 -10.40409 -10.31314 -9.89851 -9.66823 -9.56933 -8.01226 -6.16732 0.17958 0.35053 1.45114 1.46086 1.52693 1.86102 2.20987 2.47196 2.71594 3.22427 3.30943 3.48565 3.63336 3.89784 4.18436 4.33984 4.43402 4.53252 4.55358 4.62957 4.71312 4.73746 4.92458 5.01889 5.03763 5.07893 5.12326 5.22065 5.39470 5.40649 5.44569 5.52510 5.55313 5.64075 5.68533 5.69183 5.90416 6.06787 6.17377 6.23733 6.45334 6.79045 6.87421 7.16323 7.50908 7.63810 8.97543 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033351 B = 0.002837 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.359722 B = 9868.761888 C = 9970.735806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.724 5.724 14 C 0.698 3.302 15 O -0.642 6.642 16 N -0.726 5.726 17 C 0.191 3.809 18 C -0.144 4.144 19 C -0.090 4.090 20 C -0.132 4.132 21 C -0.094 4.094 22 C -0.156 4.156 23 C 0.112 3.888 24 O -0.510 6.510 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.405 0.595 35 H 0.407 0.593 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.137 0.863 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 7.497 22.087 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.379 5.379 14 C 0.397 3.603 15 O -0.524 6.524 16 N -0.383 5.383 17 C 0.068 3.932 18 C -0.145 4.145 19 C -0.108 4.108 20 C -0.150 4.150 21 C -0.112 4.112 22 C -0.175 4.175 23 C 0.067 3.933 24 O -0.322 6.322 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.242 0.758 35 H 0.243 0.757 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.171 0.829 41 H 0.159 0.841 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.711 6.349 22.473 23.646 hybrid contribution -0.227 0.134 -1.660 1.681 sum -3.938 6.484 20.813 22.152 Atomic orbital electron populations 1.21655 0.97032 0.98633 1.00382 1.18341 0.93309 0.93011 0.90105 1.21660 0.97875 0.97828 1.00365 1.21263 1.31784 1.12224 0.91639 0.93780 1.25434 0.95138 0.95590 1.00897 1.69897 1.36975 1.23236 1.23659 0.85834 0.78628 0.78826 0.79618 1.20298 1.20761 1.20301 1.21122 0.96657 0.94661 0.83244 1.45172 1.55797 1.33204 1.03768 1.16178 0.80219 0.82590 0.81273 1.90866 1.45050 1.29838 1.86696 1.44919 1.56727 1.32987 1.03649 1.19756 0.98922 0.96104 0.78465 1.20141 0.94720 0.99435 1.00232 1.21253 1.00444 0.93537 0.95615 1.21503 0.95754 1.00055 0.97683 1.21460 0.93930 0.96935 0.98856 1.21669 1.01737 0.95969 0.98093 1.18560 0.89671 0.89720 0.95335 1.84771 1.65955 1.36890 1.44628 0.94347 0.91915 0.96396 0.96416 0.91889 0.94413 0.93014 0.94742 0.94729 0.75779 0.75678 0.91600 0.92382 0.84516 0.83166 0.82884 0.84054 0.73691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.69 16 4 C -0.53 -28.22 8.01 25.60 0.21 -28.02 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.54 5.15 84.65 0.44 1.98 16 7 N -0.90 -47.81 9.35 21.45 0.20 -47.61 16 8 Si 0.94 42.71 29.54 68.60 2.03 44.74 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.17 7.27 4.50 86.38 0.39 7.65 16 13 N -0.72 -25.17 4.96 -478.52 -2.37 -27.54 16 14 C 0.70 24.53 8.57 179.05 1.53 26.07 16 15 O -0.64 -28.72 16.34 -3.99 -0.07 -28.79 16 16 N -0.73 -18.14 5.55 -482.27 -2.68 -20.82 16 17 C 0.19 4.63 5.46 85.63 0.47 5.10 16 18 C -0.14 -2.73 5.26 -19.77 -0.10 -2.83 16 19 C -0.09 -1.38 9.66 22.25 0.22 -1.16 16 20 C -0.13 -1.55 10.04 22.28 0.22 -1.32 16 21 C -0.09 -1.05 10.04 22.25 0.22 -0.82 16 22 C -0.16 -2.23 9.99 22.37 0.22 -2.00 16 23 C 0.11 2.04 6.68 22.51 0.15 2.19 16 24 O -0.51 -9.81 12.74 -92.44 -1.18 -10.99 16 25 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 26 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 30 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 31 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.41 11.94 6.18 -92.72 -0.57 11.37 16 35 H 0.41 7.71 8.48 -92.71 -0.79 6.92 16 36 H 0.07 1.67 8.00 -2.39 -0.02 1.65 16 37 H 0.06 1.66 7.86 -2.39 -0.02 1.64 16 38 H 0.14 1.82 8.04 -2.91 -0.02 1.80 16 39 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.40 4.97 9.06 -74.06 -0.67 4.30 16 Total: -1.00 -66.87 346.11 0.06 -66.82 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.97 Total: 24.31 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.10 Total: -0.11 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -4.85 Total: -95.98 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.24 Total: -39.77 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -66.87 0.06 -66.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838062428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.742 kcal (2) G-P(sol) polarization free energy of solvation -66.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds