Wall clock time and date at job start Tue Mar 31 2020 07:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47351 * 2 1 4 4 C 1.52998 * 109.46901 * 120.00604 * 2 1 3 5 5 N 1.46500 * 109.47361 * 64.99821 * 4 2 1 6 6 C 1.46503 * 119.99726 * 269.99556 * 5 4 2 7 7 C 1.50690 * 109.47303 * 270.00284 * 6 5 4 8 8 H 1.08006 * 120.00337 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00195 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99476 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00438 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47071 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47135 * 119.99487 * 11 9 7 14 14 H 1.48498 * 109.47098 * 239.99923 * 11 9 7 15 15 C 1.34778 * 120.00035 * 90.00374 * 5 4 2 16 16 O 1.21273 * 119.99772 * 180.02562 * 15 5 4 17 17 C 1.50695 * 119.99864 * 359.97438 * 15 5 4 18 18 N 1.46507 * 109.47098 * 180.02562 * 17 15 5 19 19 C 1.35763 * 119.62574 * 89.99849 * 18 17 15 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02248 * 18 17 15 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.09001 * 109.46939 * 59.99554 * 1 2 3 26 26 H 1.08995 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47018 * 300.00147 * 1 2 3 28 28 H 1.09008 * 109.46938 * 239.99773 * 2 1 3 29 29 H 1.09000 * 109.47206 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47470 * 299.99915 * 3 2 1 31 31 H 1.08999 * 109.47012 * 60.00480 * 3 2 1 32 32 H 1.09000 * 109.46883 * 304.99552 * 4 2 1 33 33 H 1.09009 * 109.47046 * 185.00206 * 4 2 1 34 34 H 1.09001 * 109.46822 * 30.00326 * 6 5 4 35 35 H 1.08998 * 109.46560 * 150.00099 * 6 5 4 36 36 H 0.96992 * 119.99425 * 179.97438 * 10 9 7 37 37 H 1.08991 * 109.47470 * 60.00573 * 17 15 5 38 38 H 1.09001 * 109.47078 * 300.00121 * 17 15 5 39 39 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 40 40 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 41 41 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 42 42 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 1.6523 -2.1330 1.1904 6 6 0.3745 -2.5660 1.7612 7 6 0.5715 -2.9409 3.2073 8 1 1.5508 -2.8647 3.6564 9 6 -0.4982 -3.3823 3.9571 10 7 -1.6906 -3.4755 3.4101 11 14 -0.2538 -3.8477 5.7496 12 1 1.1711 -3.6556 6.1210 13 1 -1.1093 -2.9871 6.6055 14 1 -0.6287 -5.2710 5.9469 15 6 2.4714 -3.0332 0.6114 16 8 2.1503 -4.2016 0.5624 17 6 3.7857 -2.5876 0.0240 18 7 4.4851 -3.7442 -0.5412 19 6 4.2775 -4.0858 -1.8387 20 6 4.9079 -5.1534 -2.3815 21 6 5.7950 -5.9119 -1.6047 22 6 6.0019 -5.5674 -0.3013 23 6 5.3263 -4.4566 0.2323 24 8 5.5025 -4.1369 1.3970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6053 -0.2619 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 -0.3485 -1.7532 1.6918 35 1 0.0041 -3.4298 1.2091 36 1 -2.4430 -3.7864 3.9374 37 1 4.3988 -2.1378 0.8048 38 1 3.6026 -1.8546 -0.7617 39 1 3.5984 -3.5023 -2.4426 40 1 4.7309 -5.4183 -3.4134 41 1 6.3056 -6.7620 -2.0324 42 1 6.6783 -6.1419 0.3142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849208353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:08 Heat of formation + Delta-G solvation = -38.236113 kcal Electronic energy + Delta-G solvation = -24114.776280 eV Core-core repulsion = 20674.536366 eV Total energy + Delta-G solvation = -3440.239914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29180 -39.08754 -36.72677 -36.46068 -34.42052 -33.57102 -32.34792 -29.87662 -29.04218 -27.14810 -26.88852 -25.46839 -23.89996 -23.14831 -22.13639 -20.34093 -18.82014 -17.47960 -17.23134 -16.75761 -16.48756 -16.28432 -15.49377 -14.92512 -14.68880 -14.55105 -14.48972 -14.07618 -13.79394 -13.61859 -13.10447 -12.53505 -12.39655 -12.29655 -12.14821 -11.98962 -11.82513 -11.68944 -11.59071 -11.40247 -11.02035 -10.94989 -10.72712 -10.55683 -10.33897 -10.30293 -10.12845 -9.77575 -9.57859 -9.02551 -8.41986 -7.85313 -7.72304 -6.04368 -4.08008 0.91889 2.00124 2.65114 3.20800 3.31742 3.39851 3.46410 3.69285 3.95945 4.46860 4.57893 4.68199 4.81003 4.93573 4.98225 5.08043 5.16069 5.26506 5.28781 5.31741 5.34847 5.44469 5.62481 5.73258 5.79707 5.99258 6.04407 6.07594 6.09999 6.12022 6.22567 6.30890 6.45879 6.57011 6.62180 7.01170 7.18819 7.37981 7.49133 7.92520 8.19960 8.23325 8.30106 8.84121 9.00486 9.57099 11.03730 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.005661 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.769780 B = 4944.763352 C = 6407.766296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.110 3.890 5 N -0.588 5.588 6 C 0.244 3.756 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.494 3.506 16 O -0.528 6.528 17 C 0.067 3.933 18 N -0.476 5.476 19 C 0.149 3.851 20 C -0.241 4.241 21 C -0.018 4.018 22 C -0.243 4.243 23 C 0.517 3.483 24 O -0.547 6.547 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.302 5.985 -14.510 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.014 4.014 5 N -0.320 5.320 6 C 0.125 3.875 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.279 3.721 16 O -0.404 6.404 17 C -0.058 4.058 18 N -0.186 5.186 19 C 0.021 3.979 20 C -0.264 4.264 21 C -0.039 4.039 22 C -0.265 4.265 23 C 0.319 3.681 24 O -0.429 6.429 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.175 0.825 40 H 0.160 0.840 41 H 0.149 0.851 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.015 5.548 -13.679 18.418 hybrid contribution -0.085 -0.296 0.970 1.017 sum 10.929 5.252 -12.709 17.566 Atomic orbital electron populations 1.21933 0.94405 1.03150 1.01150 1.21594 0.97345 0.95908 0.98450 1.21788 1.00578 0.95868 1.01982 1.21641 0.99092 0.82276 0.98441 1.48180 1.21701 1.06211 1.55866 1.19442 0.78240 0.96424 0.93377 1.21500 0.95199 1.44279 0.95471 0.92380 1.24910 0.95019 0.95324 0.98754 1.69936 0.99817 1.47178 1.36570 0.86459 0.78295 0.78249 0.84602 1.19701 1.20939 1.20879 1.20275 0.85192 0.86692 0.79973 1.90718 1.74406 1.17110 1.58209 1.22005 0.94597 0.87629 1.01598 1.45110 1.36612 1.26582 1.10272 1.21900 0.95673 0.96198 0.84167 1.20547 1.04943 0.98907 1.02048 1.21371 0.92892 0.96480 0.93204 1.22064 1.06605 1.00666 0.97138 1.17141 0.80165 0.84452 0.86306 1.90972 1.66028 1.70042 1.15866 0.93530 0.91241 0.92355 0.91831 0.92855 0.92724 0.92322 0.89429 0.91689 0.93875 0.94098 0.92813 0.85862 0.86932 0.82480 0.83959 0.85065 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.18 37.16 0.30 -1.79 16 2 C -0.11 -1.39 3.12 -90.62 -0.28 -1.68 16 3 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 4 C 0.11 1.69 4.70 -4.04 -0.02 1.67 16 5 N -0.59 -12.05 2.28 -175.06 -0.40 -12.45 16 6 C 0.24 6.24 4.23 -5.20 -0.02 6.21 16 7 C -0.53 -15.16 9.39 -34.44 -0.32 -15.49 16 8 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.06 1.79 5.46 -17.81 -0.10 1.70 16 10 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 11 Si 0.90 22.57 29.54 -169.99 -5.02 17.55 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 15 C 0.49 10.24 7.74 -10.99 -0.09 10.16 16 16 O -0.53 -13.54 16.01 5.56 0.09 -13.46 16 17 C 0.07 1.01 4.37 -5.19 -0.02 0.99 16 18 N -0.48 -7.35 2.07 -121.07 -0.25 -7.60 16 19 C 0.15 1.72 10.28 -16.84 -0.17 1.55 16 20 C -0.24 -2.44 10.01 -39.88 -0.40 -2.84 16 21 C -0.02 -0.19 10.10 -39.51 -0.40 -0.59 16 22 C -0.24 -3.48 9.99 -39.38 -0.39 -3.88 16 23 C 0.52 9.35 7.40 -15.44 -0.11 9.24 16 24 O -0.55 -12.17 16.64 4.87 0.08 -12.09 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.18 5.89 -51.93 -0.31 0.88 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.72 7.30 -51.92 -0.38 0.34 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 33 H 0.06 0.85 6.44 -51.92 -0.33 0.51 16 34 H 0.04 1.09 5.98 -51.93 -0.31 0.77 16 35 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.12 1.89 6.65 -51.93 -0.35 1.54 16 38 H 0.11 1.17 7.13 -51.93 -0.37 0.80 16 39 H 0.16 1.29 8.04 -52.49 -0.42 0.86 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -37.60 349.23 -7.39 -44.98 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.20 Total: -0.44 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.69 Total: 4.21 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.09 Total: -46.02 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: 0.17 Total: -25.54 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.60 -7.39 -44.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849208353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.746 kcal (2) G-P(sol) polarization free energy of solvation -37.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds