Wall clock time and date at job start Tue Mar 31 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46727 * 2 1 4 4 C 1.50704 * 109.47124 * 119.99927 * 2 1 3 5 5 O 1.34255 * 126.52387 * 299.97840 * 4 2 1 6 6 C 1.34052 * 108.22788 * 180.02562 * 5 4 2 7 7 N 1.29940 * 109.23988 * 359.72397 * 6 5 4 8 8 C 1.36066 * 108.47710 * 0.44228 * 7 6 5 9 9 C 1.47419 * 126.44795 * 179.82992 * 8 7 6 10 10 O 1.21619 * 119.99987 * 173.67397 * 9 8 7 11 11 N 1.34773 * 120.00040 * 353.66993 * 9 8 7 12 12 C 1.46924 * 120.63133 * 354.37205 * 11 9 8 13 13 C 1.53192 * 108.77880 * 126.43152 * 12 11 9 14 14 C 1.53043 * 109.30860 * 54.63389 * 13 12 11 15 15 C 1.53038 * 109.54172 * 298.63389 * 14 13 12 16 16 H 1.09001 * 109.49812 * 301.38798 * 15 14 13 17 17 C 1.50693 * 109.49860 * 181.31724 * 15 14 13 18 18 H 1.08001 * 120.00384 * 0.06425 * 17 15 14 19 19 C 1.37880 * 120.00082 * 179.79111 * 17 15 14 20 20 N 1.31520 * 119.99611 * 0.27827 * 19 17 15 21 21 Si 1.86793 * 120.00281 * 180.27425 * 19 17 15 22 22 H 1.48506 * 109.47139 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47291 * 119.99950 * 21 19 17 24 24 H 1.48496 * 109.47515 * 240.00163 * 21 19 17 25 25 C 1.46935 * 120.60607 * 174.39172 * 11 9 8 26 26 H 1.08993 * 109.47631 * 299.99489 * 1 2 3 27 27 H 1.08993 * 109.47302 * 60.00260 * 1 2 3 28 28 H 1.09007 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47443 * 239.99771 * 2 1 3 30 30 H 1.09002 * 109.47039 * 60.00360 * 3 2 1 31 31 H 1.09001 * 109.47126 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47466 * 299.99626 * 3 2 1 33 33 H 1.08002 * 125.38008 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.58727 * 6.64136 * 12 11 9 35 35 H 1.09001 * 109.58616 * 246.22199 * 12 11 9 36 36 H 1.09000 * 109.49898 * 294.68648 * 13 12 11 37 37 H 1.08998 * 109.52622 * 174.59844 * 13 12 11 38 38 H 1.09007 * 109.45523 * 178.61252 * 14 13 12 39 39 H 1.08997 * 109.45055 * 58.65159 * 14 13 12 40 40 H 0.97008 * 119.99640 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.56007 * 113.76216 * 25 11 9 42 42 H 1.09008 * 109.61248 * 353.33987 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7904 -0.3676 2.5058 6 6 2.4134 -1.2478 3.3020 7 7 3.0280 -2.1276 2.5694 8 6 2.8180 -1.8212 1.2605 9 6 3.3383 -2.5577 0.0942 10 8 2.9842 -2.2488 -1.0275 11 7 4.2065 -3.5732 0.2710 12 6 4.7386 -3.8793 1.6059 13 6 4.4860 -5.3593 1.9100 14 6 5.0763 -6.2148 0.7866 15 6 4.3879 -5.8691 -0.5357 16 1 3.3159 -6.0441 -0.4445 17 6 4.9472 -6.7346 -1.6353 18 1 5.7161 -7.4598 -1.4134 19 6 4.4733 -6.6046 -2.9235 20 7 3.5371 -5.7213 -3.1937 21 14 5.1611 -7.6827 -4.2850 22 1 6.1963 -8.5880 -3.7244 23 1 4.0655 -8.4914 -4.8773 24 1 5.7681 -6.8266 -5.3356 25 6 4.6388 -4.3948 -0.8679 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6765 1.9563 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 2.4025 -1.2311 4.3819 34 1 4.2354 -3.2622 2.3502 35 1 5.8100 -3.6797 1.6267 36 1 3.4130 -5.5387 1.9783 37 1 4.9599 -5.6231 2.8555 38 1 4.9196 -7.2695 1.0128 39 1 6.1448 -6.0164 0.7026 40 1 3.2039 -5.6296 -4.1001 41 1 5.7019 -4.2368 -1.0491 42 1 4.0696 -4.1182 -1.7555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:59 Heat of formation + Delta-G solvation = -16.541653 kcal Electronic energy + Delta-G solvation = -24360.375050 eV Core-core repulsion = 20921.075879 eV Total energy + Delta-G solvation = -3439.299171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.43371 -39.18993 -36.74352 -35.59664 -34.80587 -33.16332 -31.62991 -29.82483 -29.42479 -27.26519 -25.46718 -24.87391 -23.39985 -22.85899 -21.71825 -20.68804 -19.77391 -18.60701 -17.14862 -16.71883 -16.35736 -15.97568 -15.34233 -14.85283 -14.72163 -14.43245 -14.22900 -13.71147 -13.54468 -13.23848 -13.18535 -12.68916 -12.55027 -12.31710 -12.15655 -11.94392 -11.62783 -11.35612 -11.24013 -11.15019 -11.00561 -10.95590 -10.57568 -10.39013 -10.19288 -9.87868 -9.55626 -9.31302 -9.04312 -8.86257 -8.75108 -8.39145 -7.64377 -5.96706 -4.04818 1.25097 2.16800 2.59039 3.32026 3.40329 3.43808 3.67063 3.81865 4.11636 4.45865 4.56186 4.80956 5.01172 5.05496 5.25011 5.33847 5.48780 5.51248 5.65502 5.69462 5.72590 5.77407 5.80887 5.89769 5.97941 6.05201 6.13571 6.31162 6.32325 6.45719 6.67036 6.78312 6.88610 6.98528 7.06793 7.21744 7.39814 7.53060 7.69228 7.92664 8.04387 8.33039 8.43006 8.85215 9.00050 9.60472 11.08839 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.004783 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.718364 B = 5852.641119 C = 6930.667627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C -0.145 4.145 4 C 0.042 3.958 5 O -0.199 6.199 6 C 0.163 3.837 7 N -0.456 5.456 8 C -0.058 4.058 9 C 0.586 3.414 10 O -0.536 6.536 11 N -0.583 5.583 12 C 0.064 3.936 13 C -0.126 4.126 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.518 4.518 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.882 5.882 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.112 3.888 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.138 0.862 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.252 0.748 34 H 0.139 0.861 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.262 0.738 41 H 0.043 0.957 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 12.681 12.532 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.048 4.048 3 C -0.202 4.202 4 C -0.014 4.014 5 O -0.085 6.085 6 C -0.064 4.064 7 N -0.185 5.185 8 C -0.178 4.178 9 C 0.372 3.628 10 O -0.415 6.415 11 N -0.313 5.313 12 C -0.059 4.059 13 C -0.165 4.165 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.046 0.954 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.519 5.519 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.008 4.008 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.156 0.844 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.267 0.733 34 H 0.156 0.844 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.485 12.404 12.014 17.616 hybrid contribution 0.125 -0.290 -0.623 0.699 sum -3.360 12.114 11.391 16.964 Atomic orbital electron populations 1.21828 0.93298 1.02740 1.02296 1.20324 0.96686 0.96130 0.91656 1.21847 1.01594 0.94367 1.02399 1.23744 0.97808 0.96005 0.83814 1.84315 1.59029 1.48831 1.16373 1.28157 0.93521 0.85869 0.98880 1.70402 1.21220 1.24935 1.01943 1.21881 1.05228 0.98740 0.91943 1.16821 0.79752 0.80377 0.85830 1.90727 1.60395 1.66927 1.23410 1.48303 1.42325 1.29932 1.10702 1.22775 0.98855 0.98193 0.86053 1.21849 1.00948 0.95288 0.98389 1.21656 0.99307 0.97974 0.96075 1.18965 0.96440 0.91209 0.91255 0.95396 1.21139 1.21969 1.19915 0.92674 0.92305 1.25059 0.94803 0.95389 0.98817 1.69905 1.27708 1.33978 1.20348 0.86534 0.78912 0.80477 0.82075 1.19797 1.21039 1.20973 1.22349 0.98515 0.91399 0.88512 0.92552 0.91215 0.91989 0.84450 0.92491 0.92235 0.91210 0.73269 0.84425 0.93263 0.92525 0.92574 0.93268 0.93363 0.92761 0.93881 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.17 37.16 0.34 -1.28 16 2 C -0.03 -0.40 3.24 -91.77 -0.30 -0.69 16 3 C -0.14 -1.54 9.18 37.16 0.34 -1.19 16 4 C 0.04 0.62 5.94 -35.08 -0.21 0.41 16 5 O -0.20 -2.42 10.73 6.51 0.07 -2.35 16 6 C 0.16 1.72 13.19 51.96 0.69 2.41 16 7 N -0.46 -6.73 7.73 -11.48 -0.09 -6.82 16 8 C -0.06 -1.02 6.72 -83.02 -0.56 -1.58 16 9 C 0.59 12.67 7.68 -12.52 -0.10 12.57 16 10 O -0.54 -12.87 13.93 5.26 0.07 -12.80 16 11 N -0.58 -12.79 2.97 -174.03 -0.52 -13.30 16 12 C 0.06 1.18 6.33 -3.71 -0.02 1.16 16 13 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 14 C -0.11 -2.40 5.11 -26.69 -0.14 -2.53 16 15 C 0.04 1.04 2.25 -91.66 -0.21 0.83 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.38 8.56 -34.44 -0.29 -14.68 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 20 N -0.88 -25.95 11.40 55.43 0.63 -25.32 16 21 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 C 0.11 2.84 5.39 -3.71 -0.02 2.82 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.14 2.24 5.55 -51.93 -0.29 1.95 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.25 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.14 2.33 3.66 -77.47 -0.28 2.05 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.12 3.51 5.17 -51.92 -0.27 3.25 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -32.41 336.10 -6.82 -39.22 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.30 Total: 2.40 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.73 Total: -2.58 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.03 Total: -45.45 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.14 Total: -15.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.41 -6.82 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.681 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds