Wall clock time and date at job start Tue Mar 31 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46727 * 2 1 4 4 C 1.50704 * 109.47124 * 119.99927 * 2 1 3 5 5 O 1.34255 * 126.52387 * 299.97840 * 4 2 1 6 6 C 1.34052 * 108.22788 * 180.02562 * 5 4 2 7 7 N 1.29940 * 109.23988 * 359.72397 * 6 5 4 8 8 C 1.36066 * 108.47710 * 0.44228 * 7 6 5 9 9 C 1.47419 * 126.44795 * 179.82992 * 8 7 6 10 10 O 1.21619 * 119.99987 * 173.67397 * 9 8 7 11 11 N 1.34773 * 120.00040 * 353.66993 * 9 8 7 12 12 C 1.46924 * 120.63133 * 354.37205 * 11 9 8 13 13 C 1.53192 * 108.77880 * 126.43152 * 12 11 9 14 14 C 1.53043 * 109.30860 * 54.63389 * 13 12 11 15 15 C 1.53038 * 109.54172 * 298.63389 * 14 13 12 16 16 H 1.09001 * 109.49812 * 301.38798 * 15 14 13 17 17 C 1.50693 * 109.49860 * 181.31724 * 15 14 13 18 18 H 1.08001 * 120.00384 * 0.06425 * 17 15 14 19 19 C 1.37880 * 120.00082 * 179.79111 * 17 15 14 20 20 N 1.31520 * 119.99611 * 0.27827 * 19 17 15 21 21 Si 1.86793 * 120.00281 * 180.27425 * 19 17 15 22 22 H 1.48506 * 109.47139 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47291 * 119.99950 * 21 19 17 24 24 H 1.48496 * 109.47515 * 240.00163 * 21 19 17 25 25 C 1.46935 * 120.60607 * 174.39172 * 11 9 8 26 26 H 1.08993 * 109.47631 * 299.99489 * 1 2 3 27 27 H 1.08993 * 109.47302 * 60.00260 * 1 2 3 28 28 H 1.09007 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47443 * 239.99771 * 2 1 3 30 30 H 1.09002 * 109.47039 * 60.00360 * 3 2 1 31 31 H 1.09001 * 109.47126 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47466 * 299.99626 * 3 2 1 33 33 H 1.08002 * 125.38008 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.58727 * 6.64136 * 12 11 9 35 35 H 1.09001 * 109.58616 * 246.22199 * 12 11 9 36 36 H 1.09000 * 109.49898 * 294.68648 * 13 12 11 37 37 H 1.08998 * 109.52622 * 174.59844 * 13 12 11 38 38 H 1.09007 * 109.45523 * 178.61252 * 14 13 12 39 39 H 1.08997 * 109.45055 * 58.65159 * 14 13 12 40 40 H 0.97008 * 119.99640 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.56007 * 113.76216 * 25 11 9 42 42 H 1.09008 * 109.61248 * 353.33987 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7904 -0.3676 2.5058 6 6 2.4134 -1.2478 3.3020 7 7 3.0280 -2.1276 2.5694 8 6 2.8180 -1.8212 1.2605 9 6 3.3383 -2.5577 0.0942 10 8 2.9842 -2.2488 -1.0275 11 7 4.2065 -3.5732 0.2710 12 6 4.7386 -3.8793 1.6059 13 6 4.4860 -5.3593 1.9100 14 6 5.0763 -6.2148 0.7866 15 6 4.3879 -5.8691 -0.5357 16 1 3.3159 -6.0441 -0.4445 17 6 4.9472 -6.7346 -1.6353 18 1 5.7161 -7.4598 -1.4134 19 6 4.4733 -6.6046 -2.9235 20 7 3.5371 -5.7213 -3.1937 21 14 5.1611 -7.6827 -4.2850 22 1 6.1963 -8.5880 -3.7244 23 1 4.0655 -8.4914 -4.8773 24 1 5.7681 -6.8266 -5.3356 25 6 4.6388 -4.3948 -0.8679 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6765 1.9563 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 2.4025 -1.2311 4.3819 34 1 4.2354 -3.2622 2.3502 35 1 5.8100 -3.6797 1.6267 36 1 3.4130 -5.5387 1.9783 37 1 4.9599 -5.6231 2.8555 38 1 4.9196 -7.2695 1.0128 39 1 6.1448 -6.0164 0.7026 40 1 3.2039 -5.6296 -4.1001 41 1 5.7019 -4.2368 -1.0491 42 1 4.0696 -4.1182 -1.7555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:57 Heat of formation + Delta-G solvation = -38.281737 kcal Electronic energy + Delta-G solvation = -24361.317771 eV Core-core repulsion = 20921.075879 eV Total energy + Delta-G solvation = -3440.241892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.50618 -40.86728 -38.44600 -36.67281 -35.99954 -35.09929 -33.41761 -31.57990 -30.68377 -28.13274 -27.33975 -26.61103 -24.43106 -24.28088 -23.43728 -21.97722 -21.18176 -20.19407 -18.79208 -18.06099 -17.79128 -17.48902 -16.82448 -16.46971 -16.02053 -15.92667 -15.68184 -15.26000 -14.96273 -14.64560 -14.50709 -14.29011 -14.13102 -13.90382 -13.59072 -13.10996 -12.98703 -12.91353 -12.54643 -12.45029 -12.30822 -12.26989 -12.24523 -12.10136 -12.06829 -11.69989 -11.20212 -11.10062 -10.97112 -10.57498 -10.36833 -10.03081 -9.40250 -8.12659 -6.30042 0.07691 1.07727 1.39392 1.40479 1.53189 1.55127 2.15365 2.27922 2.41602 3.07689 3.16258 3.46972 3.68396 3.95229 4.06693 4.13988 4.21797 4.22459 4.39566 4.50997 4.58317 4.60958 4.71487 4.75208 4.82842 4.83983 4.85064 4.89642 5.05389 5.08837 5.20110 5.24346 5.25349 5.31262 5.34048 5.50284 5.55841 5.74189 5.88105 5.95046 6.30339 6.41518 6.67625 6.81936 7.19241 7.40082 8.91672 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.004783 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.718364 B = 5852.641119 C = 6930.667627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.037 4.037 3 C -0.137 4.137 4 C 0.056 3.944 5 O -0.188 6.188 6 C 0.203 3.797 7 N -0.488 5.488 8 C -0.094 4.094 9 C 0.576 3.424 10 O -0.577 6.577 11 N -0.592 5.592 12 C 0.061 3.939 13 C -0.117 4.117 14 C -0.107 4.107 15 C 0.040 3.960 16 H -0.016 1.016 17 C -0.536 4.536 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.916 5.916 21 Si 0.962 3.038 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.126 3.874 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.314 0.686 34 H 0.162 0.838 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.261 0.739 41 H 0.035 0.965 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 13.723 15.416 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 C -0.194 4.194 4 C -0.001 4.001 5 O -0.075 6.075 6 C -0.025 4.025 7 N -0.216 5.216 8 C -0.212 4.212 9 C 0.364 3.636 10 O -0.458 6.458 11 N -0.322 5.322 12 C -0.060 4.060 13 C -0.155 4.155 14 C -0.144 4.144 15 C 0.021 3.979 16 H 0.003 0.997 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.555 5.555 21 Si 0.787 3.213 22 H -0.185 1.185 23 H -0.207 1.207 24 H -0.207 1.207 25 C 0.004 3.996 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.328 0.672 34 H 0.178 0.822 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.324 13.428 14.932 20.355 hybrid contribution 0.024 -0.552 -1.425 1.528 sum -3.300 12.876 13.507 18.951 Atomic orbital electron populations 1.21803 0.91555 1.01999 1.04180 1.20327 0.98095 0.97278 0.89842 1.21810 1.00873 0.92531 1.04183 1.23825 0.96262 0.94855 0.85180 1.84371 1.59030 1.48916 1.15163 1.29480 0.89613 0.82963 1.00396 1.70114 1.23671 1.27031 1.00793 1.21264 1.07883 1.00155 0.91886 1.17435 0.79081 0.80174 0.86900 1.90698 1.61507 1.68076 1.25537 1.48337 1.42886 1.29867 1.11107 1.23099 0.99595 0.98722 0.84620 1.21799 1.00272 0.94511 0.98944 1.21556 0.99258 0.98882 0.94731 1.18888 0.94113 0.91325 0.93583 0.99737 1.21529 1.22019 1.20290 0.93635 0.91928 1.25929 0.95013 0.96625 1.01427 1.70097 1.29123 1.35596 1.20665 0.85448 0.78398 0.78689 0.78789 1.18475 1.20675 1.20671 1.21789 0.97109 0.91919 0.88786 0.90375 0.89611 0.94009 0.88240 0.90454 0.93321 0.89653 0.67191 0.82183 0.92270 0.93825 0.88298 0.92886 0.92676 0.93008 0.94673 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.17 71.98 0.66 -2.32 16 2 C -0.04 -0.98 3.24 -11.54 -0.04 -1.02 16 3 C -0.14 -2.71 9.18 71.98 0.66 -2.05 16 4 C 0.06 1.60 5.94 25.19 0.15 1.75 16 5 O -0.19 -3.90 10.73 0.38 0.00 -3.90 16 6 C 0.20 3.38 13.19 130.52 1.72 5.10 16 7 N -0.49 -13.30 7.73 -305.14 -2.36 -15.65 16 8 C -0.09 -3.30 6.72 40.41 0.27 -3.03 16 9 C 0.58 26.27 7.68 86.66 0.67 26.93 16 10 O -0.58 -30.08 13.93 -4.09 -0.06 -30.13 16 11 N -0.59 -27.14 2.97 -822.75 -2.45 -29.59 16 12 C 0.06 2.21 6.33 86.36 0.55 2.76 16 13 C -0.12 -4.14 6.08 30.67 0.19 -3.96 16 14 C -0.11 -4.55 5.11 30.62 0.16 -4.39 16 15 C 0.04 2.16 2.25 -11.46 -0.03 2.14 16 16 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 17 C -0.54 -30.75 8.56 25.60 0.22 -30.53 16 18 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 19 C 0.01 0.54 5.31 84.65 0.45 0.99 16 20 N -0.92 -56.91 11.40 21.45 0.24 -56.66 16 21 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.13 6.77 5.39 86.36 0.47 7.24 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.10 3.48 5.55 -2.39 -0.01 3.47 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.31 0.74 8.06 -2.91 -0.02 0.71 16 34 H 0.16 5.16 3.66 -52.81 -0.19 4.96 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.05 2.18 8.14 -2.38 -0.02 2.17 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 41 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.08 5.03 5.17 -2.38 -0.01 5.02 16 Total: -1.00 -77.53 336.10 4.34 -73.19 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.83 Total: 15.85 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.09 Total: -0.37 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -4.56 Total: -101.90 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.05 Total: -34.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -77.53 4.34 -73.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.912 kcal (2) G-P(sol) polarization free energy of solvation -77.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds