Wall clock time and date at job start Tue Mar 31 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 C 1.50701 * 109.47224 * 240.00193 * 2 1 3 5 5 O 1.34253 * 126.52448 * 59.68293 * 4 2 1 6 6 C 1.34052 * 108.22837 * 179.84245 * 5 4 2 7 7 N 1.29937 * 109.24113 * 0.43779 * 6 5 4 8 8 C 1.36062 * 108.47787 * 359.73025 * 7 6 5 9 9 C 1.47423 * 126.45220 * 179.97438 * 8 7 6 10 10 O 1.21610 * 120.00254 * 174.06644 * 9 8 7 11 11 N 1.34780 * 119.99789 * 354.05855 * 9 8 7 12 12 C 1.46927 * 120.62768 * 4.48866 * 11 9 8 13 13 C 1.52757 * 109.00663 * 233.57824 * 12 11 9 14 14 C 1.53035 * 109.38611 * 305.59239 * 13 12 11 15 15 C 1.53045 * 109.54028 * 61.24001 * 14 13 12 16 16 H 1.09002 * 109.49261 * 58.58427 * 15 14 13 17 17 C 1.50698 * 109.50099 * 178.68396 * 15 14 13 18 18 H 1.08011 * 119.99423 * 5.25818 * 17 15 14 19 19 C 1.37875 * 120.00268 * 185.25549 * 17 15 14 20 20 N 1.31508 * 119.99792 * 355.12962 * 19 17 15 21 21 Si 1.86801 * 119.99931 * 175.12985 * 19 17 15 22 22 H 1.48497 * 109.47254 * 95.00257 * 21 19 17 23 23 H 1.48503 * 109.46854 * 215.00001 * 21 19 17 24 24 H 1.48496 * 109.47035 * 334.99897 * 21 19 17 25 25 C 1.46921 * 120.63181 * 184.76467 * 11 9 8 26 26 H 1.08995 * 109.47363 * 59.99703 * 1 2 3 27 27 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47038 * 299.99902 * 1 2 3 29 29 H 1.08995 * 109.47363 * 120.00297 * 2 1 3 30 30 H 1.09001 * 109.47358 * 59.99759 * 3 2 1 31 31 H 1.08995 * 109.47538 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47255 * 300.00254 * 3 2 1 33 33 H 1.07997 * 125.38525 * 180.16586 * 6 5 4 34 34 H 1.08998 * 109.59096 * 353.41782 * 12 11 9 35 35 H 1.09004 * 109.58171 * 113.84242 * 12 11 9 36 36 H 1.08997 * 109.56591 * 185.55294 * 13 12 11 37 37 H 1.09003 * 109.38463 * 65.52110 * 13 12 11 38 38 H 1.09005 * 109.46160 * 301.21836 * 14 13 12 39 39 H 1.09003 * 109.45012 * 181.25597 * 14 13 12 40 40 H 0.96993 * 120.00170 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.59115 * 246.16221 * 25 11 9 42 42 H 1.09002 * 109.58574 * 6.58768 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7852 -0.3712 -2.5058 6 6 2.4126 -1.2483 -3.3020 7 7 3.0322 -2.1246 -2.5695 8 6 2.8179 -1.8213 -1.2605 9 6 3.3381 -2.5579 -0.0942 10 8 3.1634 -2.1220 1.0276 11 7 4.0071 -3.7144 -0.2712 12 6 4.3114 -4.2038 -1.6227 13 6 3.7970 -5.6355 -1.7610 14 6 4.3774 -6.4947 -0.6354 15 6 3.9199 -5.9437 0.7171 16 1 2.8307 -5.9418 0.7594 17 6 4.4653 -6.8094 1.8235 18 1 5.1458 -7.6157 1.5926 19 6 4.0958 -6.5720 3.1305 20 7 3.3445 -5.5330 3.4230 21 14 4.6623 -7.7262 4.4856 22 1 5.8976 -7.1882 5.1098 23 1 3.5977 -7.8418 5.5145 24 1 4.9417 -9.0662 3.9098 25 6 4.4407 -4.5127 0.8835 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 2.4011 -1.2321 -4.3818 34 1 3.8217 -3.5682 -2.3605 35 1 5.3896 -4.1889 -1.7826 36 1 4.1040 -6.0423 -2.7244 37 1 2.7089 -5.6369 -1.6956 38 1 5.4660 -6.4734 -0.6867 39 1 4.0288 -7.5216 -0.7460 40 1 3.0849 -5.3658 4.3424 41 1 5.5296 -4.5235 0.9322 42 1 4.0361 -4.0808 1.7989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:02 Heat of formation + Delta-G solvation = -16.776765 kcal Electronic energy + Delta-G solvation = -24360.378417 eV Core-core repulsion = 20921.069051 eV Total energy + Delta-G solvation = -3439.309367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -43.43904 -39.19957 -36.75364 -35.59406 -34.81338 -33.15608 -31.63341 -29.85765 -29.44344 -27.25529 -25.46664 -24.87672 -23.40454 -22.86376 -21.72204 -20.68479 -19.78191 -18.61329 -17.12634 -16.73384 -16.37281 -15.98341 -15.33807 -14.85362 -14.69267 -14.47069 -14.23998 -13.72697 -13.56685 -13.23350 -13.17721 -12.66142 -12.55051 -12.30633 -12.13715 -11.96536 -11.60590 -11.36260 -11.27385 -11.18353 -11.00261 -10.95142 -10.58047 -10.41868 -10.20947 -9.88368 -9.53196 -9.30528 -9.00701 -8.86515 -8.74878 -8.42381 -7.64622 -5.97490 -4.04976 1.24991 2.16599 2.58737 3.32554 3.40034 3.43182 3.65899 3.81855 4.11193 4.45855 4.56358 4.81559 5.02149 5.05539 5.25065 5.33640 5.48918 5.52133 5.64053 5.70470 5.72771 5.77888 5.81680 5.89436 5.99040 6.04873 6.14142 6.32072 6.32281 6.45420 6.67026 6.76980 6.89818 6.97502 7.05840 7.21109 7.39257 7.52789 7.68348 7.90732 8.03356 8.31997 8.42552 8.84964 9.00230 9.60336 11.08665 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.004797 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.085864 B = 5835.033104 C = 6903.781686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C -0.143 4.143 4 C 0.043 3.957 5 O -0.199 6.199 6 C 0.163 3.837 7 N -0.457 5.457 8 C -0.058 4.058 9 C 0.586 3.414 10 O -0.536 6.536 11 N -0.582 5.582 12 C 0.063 3.937 13 C -0.129 4.129 14 C -0.112 4.112 15 C 0.041 3.959 16 H 0.030 0.970 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.113 3.887 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.252 0.748 34 H 0.142 0.858 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.263 0.737 41 H 0.043 0.957 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 11.786 -13.121 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 C -0.201 4.201 4 C -0.013 4.013 5 O -0.085 6.085 6 C -0.064 4.064 7 N -0.186 5.186 8 C -0.178 4.178 9 C 0.372 3.628 10 O -0.415 6.415 11 N -0.312 5.312 12 C -0.061 4.061 13 C -0.167 4.167 14 C -0.150 4.150 15 C 0.022 3.978 16 H 0.048 0.952 17 C -0.558 4.558 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.007 4.007 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.156 0.844 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.267 0.733 34 H 0.158 0.842 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.543 11.603 -12.599 17.491 hybrid contribution 0.053 -0.346 0.630 0.721 sum -3.490 11.257 -11.969 16.798 Atomic orbital electron populations 1.21849 0.93382 1.02700 1.02351 1.20329 0.96544 0.96291 0.91657 1.21827 1.01663 0.94246 1.02341 1.23747 0.97901 0.95842 0.83801 1.84315 1.58775 1.49030 1.16384 1.28162 0.93446 0.85903 0.98885 1.70368 1.21733 1.24527 1.01968 1.21879 1.05375 0.98621 0.91903 1.16822 0.78974 0.81192 0.85814 1.90725 1.59620 1.67745 1.23424 1.48316 1.53301 1.20449 1.09153 1.22755 1.00473 0.97172 0.85661 1.21812 1.00556 0.95678 0.98694 1.21657 0.99325 0.97999 0.96018 1.18973 0.96895 0.90931 0.91017 0.95196 1.21093 1.28573 1.15013 0.91150 0.92371 1.25051 0.94942 0.95177 0.98805 1.69914 1.36068 1.26555 1.19277 0.86587 0.78323 0.81344 0.81805 1.20734 1.21176 1.19880 1.22358 0.97473 0.92878 0.87968 0.92523 0.92048 0.91183 0.84406 0.91217 0.92168 0.92545 0.73272 0.84167 0.93083 0.92503 0.92686 0.93375 0.93227 0.92734 0.93814 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.18 37.16 0.34 -1.30 16 2 C -0.03 -0.40 3.24 -91.77 -0.30 -0.70 16 3 C -0.14 -1.55 9.17 37.16 0.34 -1.21 16 4 C 0.04 0.64 5.94 -35.08 -0.21 0.43 16 5 O -0.20 -2.41 10.73 6.52 0.07 -2.34 16 6 C 0.16 1.71 13.19 51.96 0.69 2.40 16 7 N -0.46 -6.69 7.67 -11.48 -0.09 -6.78 16 8 C -0.06 -1.01 6.75 -83.02 -0.56 -1.57 16 9 C 0.59 12.64 7.69 -12.52 -0.10 12.54 16 10 O -0.54 -12.86 13.92 5.27 0.07 -12.79 16 11 N -0.58 -12.75 2.98 -174.30 -0.52 -13.27 16 12 C 0.06 1.15 6.30 -3.93 -0.02 1.12 16 13 C -0.13 -2.35 6.06 -26.84 -0.16 -2.52 16 14 C -0.11 -2.39 5.11 -26.69 -0.14 -2.52 16 15 C 0.04 1.05 2.19 -91.65 -0.20 0.85 16 16 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 17 C -0.52 -14.39 8.49 -34.44 -0.29 -14.69 16 18 H 0.06 1.58 7.75 -52.48 -0.41 1.17 16 19 C 0.06 1.77 5.36 -17.82 -0.10 1.67 16 20 N -0.88 -25.90 11.61 55.43 0.64 -25.25 16 21 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 25 C 0.11 2.86 5.46 -3.71 -0.02 2.84 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.14 2.27 5.55 -51.93 -0.29 1.98 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.25 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 2.37 3.62 -80.47 -0.29 2.08 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.12 3.38 5.38 -51.93 -0.28 3.10 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -32.31 336.42 -6.82 -39.13 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.32 Total: 2.43 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.73 Total: -2.66 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.04 Total: -45.30 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.14 Total: -15.13 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.31 -6.82 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.356 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds