Wall clock time and date at job start Tue Mar 31 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 C 1.50701 * 109.47224 * 240.00193 * 2 1 3 5 5 O 1.34253 * 126.52448 * 59.68293 * 4 2 1 6 6 C 1.34052 * 108.22837 * 179.84245 * 5 4 2 7 7 N 1.29937 * 109.24113 * 0.43779 * 6 5 4 8 8 C 1.36062 * 108.47787 * 359.73025 * 7 6 5 9 9 C 1.47423 * 126.45220 * 179.97438 * 8 7 6 10 10 O 1.21610 * 120.00254 * 174.06644 * 9 8 7 11 11 N 1.34780 * 119.99789 * 354.05855 * 9 8 7 12 12 C 1.46927 * 120.62768 * 4.48866 * 11 9 8 13 13 C 1.52757 * 109.00663 * 233.57824 * 12 11 9 14 14 C 1.53035 * 109.38611 * 305.59239 * 13 12 11 15 15 C 1.53045 * 109.54028 * 61.24001 * 14 13 12 16 16 H 1.09002 * 109.49261 * 58.58427 * 15 14 13 17 17 C 1.50698 * 109.50099 * 178.68396 * 15 14 13 18 18 H 1.08011 * 119.99423 * 5.25818 * 17 15 14 19 19 C 1.37875 * 120.00268 * 185.25549 * 17 15 14 20 20 N 1.31508 * 119.99792 * 355.12962 * 19 17 15 21 21 Si 1.86801 * 119.99931 * 175.12985 * 19 17 15 22 22 H 1.48497 * 109.47254 * 95.00257 * 21 19 17 23 23 H 1.48503 * 109.46854 * 215.00001 * 21 19 17 24 24 H 1.48496 * 109.47035 * 334.99897 * 21 19 17 25 25 C 1.46921 * 120.63181 * 184.76467 * 11 9 8 26 26 H 1.08995 * 109.47363 * 59.99703 * 1 2 3 27 27 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47038 * 299.99902 * 1 2 3 29 29 H 1.08995 * 109.47363 * 120.00297 * 2 1 3 30 30 H 1.09001 * 109.47358 * 59.99759 * 3 2 1 31 31 H 1.08995 * 109.47538 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47255 * 300.00254 * 3 2 1 33 33 H 1.07997 * 125.38525 * 180.16586 * 6 5 4 34 34 H 1.08998 * 109.59096 * 353.41782 * 12 11 9 35 35 H 1.09004 * 109.58171 * 113.84242 * 12 11 9 36 36 H 1.08997 * 109.56591 * 185.55294 * 13 12 11 37 37 H 1.09003 * 109.38463 * 65.52110 * 13 12 11 38 38 H 1.09005 * 109.46160 * 301.21836 * 14 13 12 39 39 H 1.09003 * 109.45012 * 181.25597 * 14 13 12 40 40 H 0.96993 * 120.00170 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.59115 * 246.16221 * 25 11 9 42 42 H 1.09002 * 109.58574 * 6.58768 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7852 -0.3712 -2.5058 6 6 2.4126 -1.2483 -3.3020 7 7 3.0322 -2.1246 -2.5695 8 6 2.8179 -1.8213 -1.2605 9 6 3.3381 -2.5579 -0.0942 10 8 3.1634 -2.1220 1.0276 11 7 4.0071 -3.7144 -0.2712 12 6 4.3114 -4.2038 -1.6227 13 6 3.7970 -5.6355 -1.7610 14 6 4.3774 -6.4947 -0.6354 15 6 3.9199 -5.9437 0.7171 16 1 2.8307 -5.9418 0.7594 17 6 4.4653 -6.8094 1.8235 18 1 5.1458 -7.6157 1.5926 19 6 4.0958 -6.5720 3.1305 20 7 3.3445 -5.5330 3.4230 21 14 4.6623 -7.7262 4.4856 22 1 5.8976 -7.1882 5.1098 23 1 3.5977 -7.8418 5.5145 24 1 4.9417 -9.0662 3.9098 25 6 4.4407 -4.5127 0.8835 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 2.4011 -1.2321 -4.3818 34 1 3.8217 -3.5682 -2.3605 35 1 5.3896 -4.1889 -1.7826 36 1 4.1040 -6.0423 -2.7244 37 1 2.7089 -5.6369 -1.6956 38 1 5.4660 -6.4734 -0.6867 39 1 4.0288 -7.5216 -0.7460 40 1 3.0849 -5.3658 4.3424 41 1 5.5296 -4.5235 0.9322 42 1 4.0361 -4.0808 1.7989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:01 Heat of formation + Delta-G solvation = -38.428035 kcal Electronic energy + Delta-G solvation = -24361.317287 eV Core-core repulsion = 20921.069051 eV Total energy + Delta-G solvation = -3440.248236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.51013 -40.87524 -38.45399 -36.67600 -36.00427 -35.09352 -33.41717 -31.62581 -30.68702 -28.13474 -27.33515 -26.61447 -24.44092 -24.28419 -23.43128 -21.97811 -21.19557 -20.19185 -18.78891 -18.05472 -17.79803 -17.50665 -16.80942 -16.48080 -16.02340 -15.92149 -15.71733 -15.27134 -14.95894 -14.66011 -14.48580 -14.29326 -14.13891 -13.86732 -13.59317 -13.11269 -13.03367 -12.91041 -12.53977 -12.46376 -12.33974 -12.29862 -12.26136 -12.10286 -12.04648 -11.70538 -11.17574 -11.08309 -10.96260 -10.61383 -10.33933 -10.03377 -9.40599 -8.13200 -6.29772 0.07607 1.08112 1.40291 1.40406 1.52506 1.54780 2.12394 2.30245 2.41792 3.06819 3.16138 3.46719 3.68259 3.95032 4.06537 4.13275 4.21479 4.22769 4.38936 4.50676 4.58572 4.60548 4.71215 4.75346 4.82971 4.83904 4.84848 4.89324 5.05133 5.08718 5.18891 5.23559 5.25160 5.30747 5.33248 5.50571 5.55666 5.74680 5.88130 5.93567 6.30581 6.41037 6.67191 6.82459 7.19095 7.40238 8.91767 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.004797 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.085864 B = 5835.033104 C = 6903.781686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C -0.136 4.136 4 C 0.056 3.944 5 O -0.188 6.188 6 C 0.203 3.797 7 N -0.487 5.487 8 C -0.094 4.094 9 C 0.575 3.425 10 O -0.577 6.577 11 N -0.592 5.592 12 C 0.059 3.941 13 C -0.120 4.120 14 C -0.107 4.107 15 C 0.041 3.959 16 H -0.013 1.013 17 C -0.538 4.538 18 H 0.062 0.938 19 C 0.010 3.990 20 N -0.916 5.916 21 Si 0.961 3.039 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.262 1.262 25 C 0.127 3.873 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.314 0.686 34 H 0.165 0.835 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.261 0.739 41 H 0.036 0.964 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 12.510 -16.129 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 C -0.193 4.193 4 C -0.001 4.001 5 O -0.074 6.074 6 C -0.024 4.024 7 N -0.216 5.216 8 C -0.211 4.211 9 C 0.364 3.636 10 O -0.459 6.459 11 N -0.322 5.322 12 C -0.062 4.062 13 C -0.158 4.158 14 C -0.144 4.144 15 C 0.022 3.978 16 H 0.005 0.995 17 C -0.576 4.576 18 H 0.080 0.920 19 C -0.189 4.189 20 N -0.554 5.554 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.186 1.186 25 C 0.005 3.995 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.329 0.671 34 H 0.181 0.819 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.675 12.305 -15.641 20.237 hybrid contribution 0.061 -0.498 1.468 1.551 sum -3.614 11.807 -14.173 18.797 Atomic orbital electron populations 1.21821 0.91555 1.02036 1.04218 1.20322 0.98027 0.97360 0.89863 1.21791 1.00841 0.92510 1.04145 1.23808 0.96479 0.94694 0.85166 1.84371 1.58769 1.49158 1.15151 1.29494 0.89469 0.83016 1.00408 1.70066 1.24044 1.26708 1.00756 1.21260 1.07974 1.00000 0.91879 1.17437 0.78251 0.81045 0.86888 1.90697 1.60854 1.68758 1.25558 1.48351 1.53687 1.20579 1.09537 1.23081 1.01359 0.97625 0.84145 1.21769 0.99595 0.95103 0.99349 1.21557 0.99757 0.98554 0.94558 1.18889 0.94119 0.91332 0.93484 0.99475 1.21493 1.28590 1.15379 0.92139 0.91954 1.25925 0.95013 0.96587 1.01418 1.70104 1.37429 1.28326 1.19547 0.85499 0.77824 0.79518 0.78567 1.20132 1.21007 1.18625 1.21797 0.96465 0.93078 0.88135 0.90305 0.93946 0.89652 0.88311 0.89696 0.93411 0.90429 0.67148 0.81930 0.92171 0.88229 0.93894 0.92691 0.92865 0.93000 0.94572 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.18 71.98 0.66 -2.35 16 2 C -0.04 -1.00 3.24 -11.54 -0.04 -1.04 16 3 C -0.14 -2.76 9.17 71.98 0.66 -2.10 16 4 C 0.06 1.60 5.94 25.19 0.15 1.75 16 5 O -0.19 -3.89 10.73 0.40 0.00 -3.88 16 6 C 0.20 3.35 13.19 130.52 1.72 5.07 16 7 N -0.49 -13.13 7.67 -305.14 -2.34 -15.47 16 8 C -0.09 -3.27 6.75 40.41 0.27 -2.99 16 9 C 0.58 26.22 7.69 86.66 0.67 26.88 16 10 O -0.58 -30.08 13.92 -4.06 -0.06 -30.14 16 11 N -0.59 -27.07 2.98 -823.61 -2.45 -29.53 16 12 C 0.06 2.14 6.30 86.22 0.54 2.69 16 13 C -0.12 -4.23 6.06 30.53 0.19 -4.04 16 14 C -0.11 -4.53 5.11 30.62 0.16 -4.38 16 15 C 0.04 2.20 2.19 -11.46 -0.03 2.18 16 16 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 17 C -0.54 -30.77 8.49 25.60 0.22 -30.56 16 18 H 0.06 3.43 7.75 -2.90 -0.02 3.41 16 19 C 0.01 0.58 5.36 84.66 0.45 1.04 16 20 N -0.92 -56.84 11.61 21.45 0.25 -56.59 16 21 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.13 6.83 5.46 86.36 0.47 7.30 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.10 3.51 5.55 -2.39 -0.01 3.50 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.31 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.16 5.23 3.62 -58.74 -0.21 5.02 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 4.70 5.38 -2.39 -0.01 4.68 16 Total: -1.00 -77.39 336.42 4.34 -73.05 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.81 Total: 15.92 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 6.10 Total: -0.56 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -4.54 Total: -101.58 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.05 Total: -34.02 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -77.39 4.34 -73.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.621 kcal (2) G-P(sol) polarization free energy of solvation -77.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds