Wall clock time and date at job start Tue Mar 31 2020 07:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47199 * 2 1 4 4 C 1.52994 * 109.46842 * 239.99608 * 2 1 3 5 5 C 1.50700 * 109.47183 * 60.00526 * 4 2 1 6 6 H 1.08005 * 119.99755 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00255 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99988 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00326 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47021 * 59.99304 * 9 7 5 11 11 H 1.48494 * 109.47379 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46788 * 299.99818 * 9 7 5 13 13 C 1.53000 * 109.47039 * 120.00094 * 2 1 3 14 14 O 1.45198 * 109.46878 * 299.99496 * 13 2 1 15 15 C 1.34763 * 117.00007 * 179.97438 * 14 13 2 16 16 O 1.21521 * 119.99447 * 0.02562 * 15 14 13 17 17 C 1.47285 * 120.00200 * 180.02562 * 15 14 13 18 18 C 1.41350 * 126.42538 * 359.97438 * 17 15 14 19 19 N 1.30431 * 108.01251 * 180.24651 * 18 17 15 20 20 N 1.39935 * 108.91787 * 359.64324 * 19 18 17 21 21 C 1.46494 * 125.74588 * 180.18845 * 20 19 18 22 22 C 1.52997 * 117.50285 * 163.82344 * 21 20 19 23 23 C 1.52998 * 60.00196 * 252.51178 * 22 21 20 24 24 C 1.34226 * 108.51001 * 0.36186 * 20 19 18 25 25 H 1.09002 * 109.46977 * 300.00160 * 1 2 3 26 26 H 1.08994 * 109.47134 * 59.99703 * 1 2 3 27 27 H 1.08999 * 109.47616 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47350 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47079 * 299.99754 * 3 2 1 30 30 H 1.09000 * 109.47995 * 59.99837 * 3 2 1 31 31 H 1.09001 * 109.47346 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47633 * 299.99979 * 4 2 1 33 33 H 0.97003 * 119.99539 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46845 * 180.02562 * 13 2 1 35 35 H 1.08991 * 109.47460 * 59.99613 * 13 2 1 36 36 H 1.08002 * 125.99154 * 359.97438 * 18 17 15 37 37 H 1.09002 * 115.54959 * 309.53899 * 21 20 19 38 38 H 1.09005 * 117.49597 * 0.02562 * 22 21 20 39 39 H 1.09005 * 117.50075 * 145.02172 * 22 21 20 40 40 H 1.08996 * 117.49826 * 252.50558 * 23 22 21 41 41 H 1.09001 * 117.51714 * 107.47932 * 23 22 21 42 42 H 1.08008 * 126.29375 * 179.76259 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8702 -0.4823 -3.7319 8 7 2.6262 -1.5517 -3.8525 9 14 1.2471 0.3979 -5.2572 10 1 1.7420 1.7980 -5.2577 11 1 1.7421 -0.3021 -6.4697 12 1 -0.2380 0.3979 -5.2566 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0367 2.4347 15 6 1.9177 -0.5491 3.6276 16 8 2.6187 -1.5406 3.6755 17 6 1.4633 0.0926 4.8730 18 6 0.6498 1.2440 4.9755 19 7 0.4733 1.5016 6.2419 20 7 1.1480 0.5376 6.9994 21 6 1.1909 0.4748 8.4623 22 6 1.6488 -0.8384 9.1000 23 6 0.1751 -0.4316 9.1606 24 6 1.7525 -0.3176 6.1598 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 -0.7210 -1.2495 32 1 1.6766 -1.7489 -1.2492 33 1 2.8605 -1.8831 -4.7336 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7488 1.2493 36 1 0.2488 1.8133 4.1501 37 1 1.4671 1.4019 8.9648 38 1 1.9185 -1.6556 8.4309 39 1 2.2266 -0.7756 10.0222 40 1 -0.2166 -0.1011 10.1225 41 1 -0.5252 -0.9809 8.5314 42 1 2.3548 -1.1695 6.4391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860735353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:27 Heat of formation + Delta-G solvation = 3.407938 kcal Electronic energy + Delta-G solvation = -22769.965993 eV Core-core repulsion = 19331.531901 eV Total energy + Delta-G solvation = -3438.434092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.69881 -39.75764 -37.69103 -36.98784 -35.22817 -32.30906 -31.59656 -30.66960 -27.30216 -26.46851 -26.34749 -24.62538 -23.29653 -23.03139 -22.31112 -20.71268 -20.15260 -18.43309 -17.99660 -16.69773 -16.39902 -16.20277 -15.94364 -15.65086 -14.99009 -14.52388 -14.44416 -13.67869 -13.52951 -13.35034 -13.20350 -12.94441 -12.30240 -12.27428 -12.21844 -12.01419 -11.62479 -11.49302 -11.20134 -11.09190 -10.91396 -10.82163 -10.54346 -10.36308 -10.21824 -10.19421 -10.13535 -9.82092 -9.67182 -9.16987 -8.96546 -8.91058 -8.33152 -5.97571 -3.98487 1.18106 1.82148 1.94691 2.87454 3.14963 3.28155 3.35243 3.39987 3.42194 3.87828 4.04526 4.24748 4.39838 4.47954 4.60734 4.92215 4.99762 5.07716 5.16543 5.26336 5.36739 5.38089 5.53822 5.59246 5.59737 5.89107 6.11326 6.22010 6.26400 6.44471 6.48387 6.57870 6.71350 6.76772 6.91067 7.16769 7.17522 7.19361 7.27488 7.64954 7.77416 8.00945 8.12157 8.43599 9.05698 9.64314 11.14060 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.045049 B = 0.002650 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.399605 B =10564.997970 C =10906.297374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.034 3.966 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.082 3.918 14 O -0.345 6.345 15 C 0.539 3.461 16 O -0.526 6.526 17 C -0.272 4.272 18 C 0.105 3.895 19 N -0.295 5.295 20 N -0.336 5.336 21 C 0.078 3.922 22 C -0.170 4.170 23 C -0.173 4.173 24 C 0.131 3.869 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.201 0.799 37 H 0.145 0.855 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 3.328 25.950 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.008 3.992 14 O -0.261 6.261 15 C 0.384 3.616 16 O -0.417 6.417 17 C -0.285 4.285 18 C -0.083 4.083 19 N -0.114 5.114 20 N -0.113 5.113 21 C -0.025 4.025 22 C -0.208 4.208 23 C -0.211 4.211 24 C -0.020 4.020 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.218 0.782 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.399 3.722 26.771 27.241 hybrid contribution 0.257 -0.351 -1.613 1.671 sum -3.143 3.372 25.158 25.576 Atomic orbital electron populations 1.21713 0.94852 1.00917 1.00811 1.20801 0.96124 0.96196 0.92690 1.21713 1.00025 0.95750 1.00814 1.19125 0.96389 0.95299 0.89453 1.21121 1.31174 1.12089 0.90309 0.92127 1.25015 0.95336 0.95104 0.99097 1.69960 1.36989 1.23055 1.23544 0.86680 0.79172 0.79762 0.82511 1.20279 1.21434 1.20277 1.23486 0.98903 0.95892 0.80870 1.86520 1.69519 1.55624 1.14436 1.19909 0.76870 0.81215 0.83656 1.90818 1.36734 1.25816 1.88320 1.19412 1.14089 1.03941 0.91097 1.24337 0.94820 0.94688 0.94485 1.77279 1.18589 1.11818 1.03686 1.47852 1.37523 1.20677 1.05294 1.21843 1.07605 0.97849 0.75196 1.23498 0.98262 0.95948 1.03095 1.23502 0.92886 1.01889 1.02774 1.22851 0.95111 0.95121 0.88891 0.94133 0.91638 0.93807 0.93795 0.91643 0.94121 0.96338 0.96340 0.92998 0.91647 0.91654 0.78215 0.83803 0.87409 0.86277 0.86770 0.87726 0.79480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 2 C -0.06 -1.18 0.61 -154.51 -0.09 -1.28 16 3 C -0.13 -2.41 8.08 37.15 0.30 -2.10 16 4 C 0.03 0.87 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.77 7.65 -34.44 -0.26 -14.03 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.08 1.54 4.33 37.16 0.16 1.71 16 14 O -0.35 -5.89 8.73 -40.66 -0.35 -6.24 16 15 C 0.54 8.79 7.95 34.41 0.27 9.07 16 16 O -0.53 -9.79 16.69 -19.28 -0.32 -10.11 16 17 C -0.27 -3.62 6.13 -105.08 -0.64 -4.26 16 18 C 0.10 1.27 11.87 -16.96 -0.20 1.07 16 19 N -0.30 -3.59 12.50 30.87 0.39 -3.20 16 20 N -0.34 -3.38 3.90 -54.30 -0.21 -3.59 16 21 C 0.08 0.49 7.12 -67.93 -0.48 0.00 16 22 C -0.17 -0.66 9.97 -26.73 -0.27 -0.93 16 23 C -0.17 -0.82 10.46 -26.73 -0.28 -1.10 16 24 C 0.13 1.41 10.62 -16.55 -0.18 1.23 16 25 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 26 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 30 H 0.04 0.68 7.68 -51.93 -0.40 0.29 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.20 2.05 8.06 -52.49 -0.42 1.62 16 37 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.44 6.98 -51.93 -0.36 0.07 16 39 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.19 1.55 7.20 -52.48 -0.38 1.17 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -32.79 354.56 -7.34 -40.13 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.31 Total: -2.31 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.58 Total: -10.50 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.91 Total: -32.73 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.68 Total: -16.36 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.79 -7.34 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.538 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds