Wall clock time and date at job start Tue Mar 31 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47199 * 2 1 4 4 C 1.52994 * 109.46842 * 239.99608 * 2 1 3 5 5 C 1.50700 * 109.47183 * 60.00526 * 4 2 1 6 6 H 1.08005 * 119.99755 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00255 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99988 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00326 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47021 * 59.99304 * 9 7 5 11 11 H 1.48494 * 109.47379 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46788 * 299.99818 * 9 7 5 13 13 C 1.53000 * 109.47039 * 120.00094 * 2 1 3 14 14 O 1.45198 * 109.46878 * 299.99496 * 13 2 1 15 15 C 1.34763 * 117.00007 * 179.97438 * 14 13 2 16 16 O 1.21521 * 119.99447 * 0.02562 * 15 14 13 17 17 C 1.47285 * 120.00200 * 180.02562 * 15 14 13 18 18 C 1.41350 * 126.42538 * 359.97438 * 17 15 14 19 19 N 1.30431 * 108.01251 * 180.24651 * 18 17 15 20 20 N 1.39935 * 108.91787 * 359.64324 * 19 18 17 21 21 C 1.46494 * 125.74588 * 180.18845 * 20 19 18 22 22 C 1.52997 * 117.50285 * 163.82344 * 21 20 19 23 23 C 1.52998 * 60.00196 * 252.51178 * 22 21 20 24 24 C 1.34226 * 108.51001 * 0.36186 * 20 19 18 25 25 H 1.09002 * 109.46977 * 300.00160 * 1 2 3 26 26 H 1.08994 * 109.47134 * 59.99703 * 1 2 3 27 27 H 1.08999 * 109.47616 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47350 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47079 * 299.99754 * 3 2 1 30 30 H 1.09000 * 109.47995 * 59.99837 * 3 2 1 31 31 H 1.09001 * 109.47346 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47633 * 299.99979 * 4 2 1 33 33 H 0.97003 * 119.99539 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46845 * 180.02562 * 13 2 1 35 35 H 1.08991 * 109.47460 * 59.99613 * 13 2 1 36 36 H 1.08002 * 125.99154 * 359.97438 * 18 17 15 37 37 H 1.09002 * 115.54959 * 309.53899 * 21 20 19 38 38 H 1.09005 * 117.49597 * 0.02562 * 22 21 20 39 39 H 1.09005 * 117.50075 * 145.02172 * 22 21 20 40 40 H 1.08996 * 117.49826 * 252.50558 * 23 22 21 41 41 H 1.09001 * 117.51714 * 107.47932 * 23 22 21 42 42 H 1.08008 * 126.29375 * 179.76259 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8702 -0.4823 -3.7319 8 7 2.6262 -1.5517 -3.8525 9 14 1.2471 0.3979 -5.2572 10 1 1.7420 1.7980 -5.2577 11 1 1.7421 -0.3021 -6.4697 12 1 -0.2380 0.3979 -5.2566 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0367 2.4347 15 6 1.9177 -0.5491 3.6276 16 8 2.6187 -1.5406 3.6755 17 6 1.4633 0.0926 4.8730 18 6 0.6498 1.2440 4.9755 19 7 0.4733 1.5016 6.2419 20 7 1.1480 0.5376 6.9994 21 6 1.1909 0.4748 8.4623 22 6 1.6488 -0.8384 9.1000 23 6 0.1751 -0.4316 9.1606 24 6 1.7525 -0.3176 6.1598 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 -0.7210 -1.2495 32 1 1.6766 -1.7489 -1.2492 33 1 2.8605 -1.8831 -4.7336 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7488 1.2493 36 1 0.2488 1.8133 4.1501 37 1 1.4671 1.4019 8.9648 38 1 1.9185 -1.6556 8.4309 39 1 2.2266 -0.7756 10.0222 40 1 -0.2166 -0.1011 10.1225 41 1 -0.5252 -0.9809 8.5314 42 1 2.3548 -1.1695 6.4391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860735353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:26 Heat of formation + Delta-G solvation = -14.554838 kcal Electronic energy + Delta-G solvation = -22770.744917 eV Core-core repulsion = 19331.531901 eV Total energy + Delta-G solvation = -3439.213017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.57230 -41.08541 -38.65121 -38.09762 -36.76662 -34.38194 -32.39510 -31.63485 -29.26461 -27.98184 -27.91729 -25.76289 -24.66628 -23.80565 -23.23649 -21.57614 -21.11909 -19.89601 -19.14030 -18.35266 -17.81898 -17.42050 -16.93457 -16.69230 -16.48039 -15.82378 -15.27724 -15.16422 -14.96412 -14.73383 -14.12714 -14.04879 -13.92678 -13.85906 -13.62240 -12.92343 -12.75148 -12.62195 -12.52748 -12.52304 -12.27799 -12.18992 -12.01260 -11.94886 -11.79060 -11.67292 -11.42690 -11.31766 -11.00164 -10.87374 -10.61282 -10.49617 -9.86474 -8.13319 -6.20896 0.24061 0.96789 1.09735 1.44094 1.46527 1.53640 1.81216 2.13684 2.46003 2.54352 3.21079 3.42397 3.54031 3.68361 3.80877 3.88003 3.93820 3.98753 3.98965 4.26958 4.32900 4.43509 4.64292 4.65102 4.67453 4.74780 4.78808 4.91716 5.06316 5.06974 5.13280 5.17514 5.29973 5.45970 5.49290 5.49483 5.55866 5.57519 5.75961 5.78320 5.89887 6.30796 6.39605 6.81579 6.92820 7.46415 8.99140 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.045049 B = 0.002650 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.399605 B =10564.997970 C =10906.297374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.072 0.928 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.092 3.908 14 O -0.340 6.340 15 C 0.540 3.460 16 O -0.556 6.556 17 C -0.302 4.302 18 C 0.105 3.895 19 N -0.315 5.315 20 N -0.327 5.327 21 C 0.047 3.953 22 C -0.151 4.151 23 C -0.169 4.169 24 C 0.146 3.854 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.068 0.932 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.214 0.786 37 H 0.158 0.842 38 H 0.107 0.893 39 H 0.145 0.855 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 4.662 27.973 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.054 4.054 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.192 1.192 13 C 0.018 3.982 14 O -0.256 6.256 15 C 0.387 3.613 16 O -0.448 6.448 17 C -0.315 4.315 18 C -0.082 4.082 19 N -0.133 5.133 20 N -0.103 5.103 21 C -0.054 4.054 22 C -0.189 4.189 23 C -0.207 4.207 24 C -0.008 4.008 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.175 0.825 38 H 0.125 0.875 39 H 0.163 0.837 40 H 0.153 0.847 41 H 0.108 0.892 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.343 5.090 28.834 29.600 hybrid contribution 0.549 -0.799 -2.058 2.274 sum -3.794 4.291 26.776 27.382 Atomic orbital electron populations 1.21647 0.93508 1.00852 1.01658 1.20612 0.97110 0.96527 0.91115 1.21647 0.99667 0.94700 1.01662 1.18991 0.94532 0.94354 0.91908 1.21508 1.30605 1.12160 0.90930 0.91018 1.25942 0.95633 0.95877 1.02669 1.70112 1.38664 1.24881 1.24215 0.85573 0.78967 0.78745 0.78208 1.19167 1.21554 1.19158 1.23117 0.98249 0.95370 0.81474 1.86497 1.69501 1.55291 1.14295 1.20374 0.76169 0.80840 0.83913 1.90800 1.38299 1.27231 1.88514 1.19326 1.16354 1.05291 0.90513 1.24554 0.94383 0.94322 0.94989 1.77241 1.19379 1.12897 1.03805 1.48188 1.35978 1.19516 1.06655 1.22357 1.10058 0.99803 0.73175 1.23661 0.97727 0.94021 1.03476 1.23564 0.93177 1.00937 1.03016 1.23187 0.94129 0.95216 0.88223 0.91371 0.92549 0.94390 0.94383 0.92553 0.91358 0.99168 0.99164 0.93097 0.92522 0.92521 0.76943 0.82486 0.87467 0.83706 0.84734 0.89214 0.77248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.08 71.98 0.58 -3.88 16 2 C -0.05 -2.19 0.61 -52.19 -0.03 -2.22 16 3 C -0.12 -4.47 8.08 71.98 0.58 -3.89 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -28.11 7.65 25.60 0.20 -27.91 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 9 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 C 0.09 3.52 4.33 71.98 0.31 3.83 16 14 O -0.34 -11.39 8.73 -56.74 -0.50 -11.88 16 15 C 0.54 17.44 7.95 70.20 0.56 17.99 16 16 O -0.56 -20.78 16.69 19.77 0.33 -20.45 16 17 C -0.30 -7.71 6.13 -20.16 -0.12 -7.84 16 18 C 0.10 2.41 11.87 85.67 1.02 3.43 16 19 N -0.31 -7.19 12.50 -56.24 -0.70 -7.89 16 20 N -0.33 -5.97 3.90 -325.72 -1.27 -7.24 16 21 C 0.05 0.48 7.12 44.99 0.32 0.80 16 22 C -0.15 -0.70 9.97 30.59 0.31 -0.39 16 23 C -0.17 -1.17 10.46 30.59 0.32 -0.85 16 24 C 0.15 2.89 10.62 84.30 0.90 3.79 16 25 H 0.07 2.16 7.68 -2.39 -0.02 2.14 16 26 H 0.06 2.19 6.62 -2.39 -0.02 2.18 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 2.19 6.62 -2.38 -0.02 2.18 16 30 H 0.07 2.16 7.68 -2.39 -0.02 2.15 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.21 4.02 8.06 -2.91 -0.02 4.00 16 37 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 0.55 6.98 -2.38 -0.02 0.54 16 39 H 0.14 -0.04 8.14 -2.38 -0.02 -0.06 16 40 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.21 3.04 7.20 -2.91 -0.02 3.02 16 Total: -1.00 -71.74 354.56 6.70 -65.05 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.01 Total: 8.08 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 5.51 Total: -14.76 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -1.69 Total: -72.13 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.17 Total: -32.34 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.74 6.70 -65.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.492 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds