Wall clock time and date at job start Tue Mar 31 2020 07:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35649 * 116.99656 * 2 1 4 4 C 1.39344 * 120.54222 * 0.02562 * 3 2 1 5 5 C 1.38298 * 118.44216 * 180.02562 * 4 3 2 6 6 C 1.38765 * 119.44633 * 359.97438 * 5 4 3 7 7 N 1.31383 * 121.06477 * 359.97438 * 6 5 4 8 8 C 1.32851 * 121.69600 * 0.02562 * 7 6 5 9 9 C 1.47833 * 119.78325 * 179.72435 * 8 7 6 10 10 O 1.21550 * 120.00015 * 175.03229 * 9 8 7 11 11 N 1.34780 * 119.99810 * 355.02986 * 9 8 7 12 12 C 1.46498 * 120.00040 * 2.15315 * 11 9 8 13 13 C 1.50702 * 109.47109 * 82.05059 * 12 11 9 14 14 H 1.07993 * 120.00073 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99713 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99991 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99910 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47071 * 59.99585 * 17 15 13 19 19 H 1.48500 * 109.46919 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47017 * 299.99678 * 17 15 13 21 21 C 1.46494 * 119.99759 * 182.14746 * 11 9 8 22 22 C 1.53004 * 109.47139 * 95.81389 * 21 11 9 23 23 C 1.53004 * 109.47468 * 174.16595 * 22 21 11 24 24 C 1.52998 * 109.47159 * 294.16694 * 22 21 11 25 25 H 1.08995 * 109.47572 * 59.99643 * 1 2 3 26 26 H 1.09007 * 109.46788 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46838 * 299.98814 * 1 2 3 28 28 H 1.07999 * 120.77910 * 0.03921 * 4 3 2 29 29 H 1.08005 * 120.27952 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.47106 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47012 * 202.05099 * 12 11 9 32 32 H 1.08999 * 109.47063 * 322.05003 * 12 11 9 33 33 H 0.97003 * 119.99315 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.47110 * 215.81171 * 21 11 9 35 35 H 1.09004 * 109.47538 * 335.81541 * 21 11 9 36 36 H 1.09004 * 109.46481 * 54.16660 * 22 21 11 37 37 H 1.08999 * 109.46656 * 59.99821 * 23 22 21 38 38 H 1.08996 * 109.47230 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.46494 * 300.00474 * 23 22 21 40 40 H 1.08998 * 109.47012 * 185.99035 * 24 22 21 41 41 H 1.08992 * 109.47308 * 305.99645 * 24 22 21 42 42 H 1.09010 * 109.47175 * 65.99135 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3844 0.0005 5 6 1.9693 3.5929 0.0000 6 6 3.3569 3.6013 -0.0006 7 7 4.0417 2.4801 0.0000 8 6 3.4409 1.2952 0.0005 9 6 4.2531 0.0600 -0.0051 10 8 3.7112 -1.0241 0.0865 11 7 5.5945 0.1360 -0.1118 12 6 6.2514 1.4440 -0.1748 13 6 6.4126 1.9928 1.2194 14 1 6.0614 1.4240 2.0676 15 6 7.0086 3.2211 1.4121 16 7 7.4368 3.9135 0.3792 17 14 7.2091 3.9011 3.1404 18 1 8.0388 2.9694 3.9457 19 1 7.8748 5.2270 3.0764 20 1 5.8735 4.0472 3.7728 21 6 6.3957 -1.0893 -0.1648 22 6 6.6832 -1.4480 -1.6241 23 6 7.6389 -2.6417 -1.6772 24 6 5.3740 -1.8112 -2.3275 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.2173 2.3527 0.0016 29 1 1.4192 4.5223 -0.0001 30 1 3.8826 4.5448 -0.0006 31 1 7.2320 1.3362 -0.6385 32 1 5.6429 2.1280 -0.7664 33 1 7.8564 4.7775 0.5149 34 1 7.3364 -0.9314 0.3627 35 1 5.8462 -1.9034 0.3080 36 1 7.1400 -0.5943 -2.1248 37 1 7.1821 -3.4953 -1.1764 38 1 7.8441 -2.8969 -2.7168 39 1 8.5716 -2.3828 -1.1760 40 1 5.5895 -2.1685 -3.3344 41 1 4.8646 -2.5939 -1.7655 42 1 4.7350 -0.9298 -2.3837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865027077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:18 Heat of formation + Delta-G solvation = -20.589695 kcal Electronic energy + Delta-G solvation = -24689.291289 eV Core-core repulsion = 21249.816582 eV Total energy + Delta-G solvation = -3439.474708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43582 -38.64177 -37.68319 -35.73541 -33.95465 -32.10766 -31.68389 -30.28406 -27.37930 -27.16877 -26.71399 -25.84513 -23.61420 -22.56350 -22.36556 -20.07227 -18.88599 -17.66023 -16.87310 -16.46144 -16.13505 -15.60295 -15.32323 -14.80196 -14.43413 -14.23258 -14.07903 -13.92076 -13.38658 -13.32166 -13.11301 -12.48696 -12.21665 -12.17982 -11.94476 -11.82646 -11.44229 -11.32184 -11.20684 -11.12513 -10.85414 -10.77316 -10.60707 -10.46655 -10.22200 -9.93265 -9.53537 -9.36225 -9.11270 -8.51573 -8.04744 -8.00890 -7.39336 -5.92591 -3.90768 1.23704 1.72142 3.34435 3.38487 3.42336 3.45362 3.58580 3.99575 4.48612 4.54844 4.86367 4.99545 5.07191 5.20036 5.22285 5.35125 5.39680 5.42418 5.43186 5.51458 5.57606 5.68365 5.88666 5.98417 6.07744 6.13213 6.23718 6.26557 6.36409 6.40254 6.45595 6.49509 6.74877 6.82091 6.85789 7.04564 7.51934 7.67664 7.94265 8.01738 8.40589 8.47393 8.57135 9.07539 9.22502 9.68276 11.15188 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.008627 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.442225 B = 3244.703385 C = 5401.386445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.275 6.275 3 C 0.121 3.879 4 C -0.192 4.192 5 C -0.120 4.120 6 C 0.052 3.948 7 N -0.340 5.340 8 C 0.050 3.950 9 C 0.569 3.431 10 O -0.553 6.553 11 N -0.578 5.578 12 C 0.231 3.769 13 C -0.493 4.493 14 H 0.049 0.951 15 C 0.068 3.932 16 N -0.892 5.892 17 Si 0.883 3.117 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.280 1.280 21 C 0.122 3.878 22 C -0.112 4.112 23 C -0.141 4.141 24 C -0.134 4.134 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.259 0.741 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 -4.041 -3.946 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.185 6.185 3 C 0.070 3.930 4 C -0.218 4.218 5 C -0.140 4.140 6 C -0.107 4.107 7 N -0.050 5.050 8 C -0.090 4.090 9 C 0.356 3.644 10 O -0.432 6.432 11 N -0.307 5.307 12 C 0.111 3.889 13 C -0.532 4.532 14 H 0.067 0.933 15 C -0.133 4.133 16 N -0.532 5.532 17 Si 0.711 3.289 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.206 1.206 21 C -0.002 4.002 22 C -0.132 4.132 23 C -0.198 4.198 24 C -0.192 4.192 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.176 0.824 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.083 -4.641 -3.945 10.936 hybrid contribution -1.020 0.983 1.155 1.827 sum -10.102 -3.659 -2.790 11.101 Atomic orbital electron populations 1.23090 0.79781 1.03823 1.00728 1.86417 1.19860 1.25114 1.87131 1.20146 0.92585 0.85213 0.95011 1.21514 1.00172 0.92070 1.08080 1.22176 0.96148 0.97766 0.97950 1.22997 0.90556 0.97823 0.99372 1.68926 1.35771 0.96518 1.03833 1.20976 0.87755 0.94093 1.06162 1.17577 0.82456 0.86828 0.77578 1.90705 1.72071 1.27982 1.52451 1.48152 1.04951 1.09145 1.68442 1.20024 0.92921 0.77772 0.98163 1.21255 1.36893 1.02802 0.92293 0.93293 1.24737 0.95927 0.96580 0.96067 1.69925 1.40735 1.13434 1.29078 0.86818 0.78162 0.78167 0.85738 1.20538 1.21369 1.20597 1.21421 0.95753 0.87822 0.95187 1.21509 0.96210 0.98177 0.97299 1.21747 0.99049 0.97879 1.01173 1.21722 0.96983 1.01611 0.98840 0.93056 0.88318 0.93016 0.84702 0.85045 0.82361 0.95966 0.90216 0.93118 0.90804 0.90735 0.90997 0.92873 0.93029 0.92681 0.93939 0.92424 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.83 101.05 0.99 1.24 16 2 O -0.28 -4.89 8.57 -40.54 -0.35 -5.24 16 3 C 0.12 2.23 6.71 -38.55 -0.26 1.97 16 4 C -0.19 -2.84 9.13 -39.15 -0.36 -3.19 16 5 C -0.12 -1.75 10.10 -39.36 -0.40 -2.15 16 6 C 0.05 0.95 11.17 -17.55 -0.20 0.75 16 7 N -0.34 -7.45 4.91 -9.71 -0.05 -7.50 16 8 C 0.05 1.08 6.63 -82.88 -0.55 0.53 16 9 C 0.57 13.08 6.33 -12.33 -0.08 13.00 16 10 O -0.55 -13.08 13.82 -16.57 -0.23 -13.31 16 11 N -0.58 -13.04 2.30 -176.18 -0.41 -13.44 16 12 C 0.23 5.75 4.80 -5.19 -0.02 5.72 16 13 C -0.49 -13.27 7.85 -34.44 -0.27 -13.55 16 14 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 17 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.12 2.37 4.92 -4.04 -0.02 2.35 16 22 C -0.11 -1.88 3.12 -90.62 -0.28 -2.17 16 23 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 24 C -0.13 -2.25 8.10 37.16 0.30 -1.95 16 25 H 0.05 0.50 7.70 -51.93 -0.40 0.10 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.52 7.70 -51.93 -0.40 0.12 16 28 H 0.14 1.50 6.46 -52.49 -0.34 1.16 16 29 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 30 H 0.16 2.75 8.06 -52.48 -0.42 2.33 16 31 H 0.02 0.58 8.01 -51.93 -0.42 0.17 16 32 H 0.08 2.08 5.31 -52.01 -0.28 1.80 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 35 H 0.07 1.46 7.23 -51.93 -0.38 1.09 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 42 H 0.05 0.95 7.05 -51.92 -0.37 0.59 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -31.31 343.80 -7.37 -38.68 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.34 Total: 0.65 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.90 Total: 2.72 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.28 Total: -44.89 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.58 Total: -18.55 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.31 -7.37 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.086 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds