Wall clock time and date at job start Tue Mar 31 2020 07:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35649 * 116.99656 * 2 1 4 4 C 1.39344 * 120.54222 * 0.02562 * 3 2 1 5 5 C 1.38298 * 118.44216 * 180.02562 * 4 3 2 6 6 C 1.38765 * 119.44633 * 359.97438 * 5 4 3 7 7 N 1.31383 * 121.06477 * 359.97438 * 6 5 4 8 8 C 1.32851 * 121.69600 * 0.02562 * 7 6 5 9 9 C 1.47833 * 119.78325 * 179.72435 * 8 7 6 10 10 O 1.21550 * 120.00015 * 175.03229 * 9 8 7 11 11 N 1.34780 * 119.99810 * 355.02986 * 9 8 7 12 12 C 1.46498 * 120.00040 * 2.15315 * 11 9 8 13 13 C 1.50702 * 109.47109 * 82.05059 * 12 11 9 14 14 H 1.07993 * 120.00073 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99713 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99991 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99910 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47071 * 59.99585 * 17 15 13 19 19 H 1.48500 * 109.46919 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47017 * 299.99678 * 17 15 13 21 21 C 1.46494 * 119.99759 * 182.14746 * 11 9 8 22 22 C 1.53004 * 109.47139 * 95.81389 * 21 11 9 23 23 C 1.53004 * 109.47468 * 174.16595 * 22 21 11 24 24 C 1.52998 * 109.47159 * 294.16694 * 22 21 11 25 25 H 1.08995 * 109.47572 * 59.99643 * 1 2 3 26 26 H 1.09007 * 109.46788 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46838 * 299.98814 * 1 2 3 28 28 H 1.07999 * 120.77910 * 0.03921 * 4 3 2 29 29 H 1.08005 * 120.27952 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.47106 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47012 * 202.05099 * 12 11 9 32 32 H 1.08999 * 109.47063 * 322.05003 * 12 11 9 33 33 H 0.97003 * 119.99315 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.47110 * 215.81171 * 21 11 9 35 35 H 1.09004 * 109.47538 * 335.81541 * 21 11 9 36 36 H 1.09004 * 109.46481 * 54.16660 * 22 21 11 37 37 H 1.08999 * 109.46656 * 59.99821 * 23 22 21 38 38 H 1.08996 * 109.47230 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.46494 * 300.00474 * 23 22 21 40 40 H 1.08998 * 109.47012 * 185.99035 * 24 22 21 41 41 H 1.08992 * 109.47308 * 305.99645 * 24 22 21 42 42 H 1.09010 * 109.47175 * 65.99135 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3844 0.0005 5 6 1.9693 3.5929 0.0000 6 6 3.3569 3.6013 -0.0006 7 7 4.0417 2.4801 0.0000 8 6 3.4409 1.2952 0.0005 9 6 4.2531 0.0600 -0.0051 10 8 3.7112 -1.0241 0.0865 11 7 5.5945 0.1360 -0.1118 12 6 6.2514 1.4440 -0.1748 13 6 6.4126 1.9928 1.2194 14 1 6.0614 1.4240 2.0676 15 6 7.0086 3.2211 1.4121 16 7 7.4368 3.9135 0.3792 17 14 7.2091 3.9011 3.1404 18 1 8.0388 2.9694 3.9457 19 1 7.8748 5.2270 3.0764 20 1 5.8735 4.0472 3.7728 21 6 6.3957 -1.0893 -0.1648 22 6 6.6832 -1.4480 -1.6241 23 6 7.6389 -2.6417 -1.6772 24 6 5.3740 -1.8112 -2.3275 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.2173 2.3527 0.0016 29 1 1.4192 4.5223 -0.0001 30 1 3.8826 4.5448 -0.0006 31 1 7.2320 1.3362 -0.6385 32 1 5.6429 2.1280 -0.7664 33 1 7.8564 4.7775 0.5149 34 1 7.3364 -0.9314 0.3627 35 1 5.8462 -1.9034 0.3080 36 1 7.1400 -0.5943 -2.1248 37 1 7.1821 -3.4953 -1.1764 38 1 7.8441 -2.8969 -2.7168 39 1 8.5716 -2.3828 -1.1760 40 1 5.5895 -2.1685 -3.3344 41 1 4.8646 -2.5939 -1.7655 42 1 4.7350 -0.9298 -2.3837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865027077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:18 Heat of formation + Delta-G solvation = -38.097761 kcal Electronic energy + Delta-G solvation = -24690.050496 eV Core-core repulsion = 21249.816582 eV Total energy + Delta-G solvation = -3440.233914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.85131 -40.20906 -39.01767 -37.32155 -35.66527 -34.04652 -33.04406 -31.62200 -29.18764 -28.32695 -28.02254 -27.35754 -25.24560 -24.35204 -23.66727 -21.50353 -20.44232 -18.93327 -18.55678 -18.19372 -17.78009 -16.90348 -16.83074 -16.43671 -16.11372 -15.81992 -15.47115 -15.17007 -14.73008 -14.65743 -14.54103 -14.16493 -13.89522 -13.63248 -13.43563 -13.10682 -13.07854 -12.77637 -12.70548 -12.54043 -12.31269 -12.27932 -12.19505 -12.03643 -11.83607 -11.53973 -11.49181 -10.84905 -10.69457 -10.45268 -9.69085 -9.46115 -9.12604 -7.99785 -6.05228 -0.13975 0.42791 1.41293 1.42390 1.49535 1.99018 2.26720 2.40462 2.53333 3.04050 3.32605 3.49419 3.75260 3.85281 3.94349 4.05844 4.12601 4.20560 4.36377 4.38148 4.40498 4.54604 4.67023 4.69829 4.73416 4.80964 4.89542 4.98802 5.01116 5.05849 5.10858 5.12958 5.20804 5.42503 5.44101 5.51577 5.65028 5.96350 6.05297 6.34585 6.36980 6.66338 6.98210 7.14208 7.47807 7.59576 9.06936 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.008627 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.442225 B = 3244.703385 C = 5401.386445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.307 6.307 3 C 0.120 3.880 4 C -0.177 4.177 5 C -0.091 4.091 6 C 0.029 3.971 7 N -0.381 5.381 8 C 0.000 4.000 9 C 0.562 3.438 10 O -0.570 6.570 11 N -0.586 5.586 12 C 0.251 3.749 13 C -0.499 4.499 14 H 0.027 0.973 15 C 0.034 3.966 16 N -0.914 5.914 17 Si 0.937 3.063 18 H -0.281 1.281 19 H -0.278 1.278 20 H -0.280 1.280 21 C 0.118 3.882 22 C -0.107 4.107 23 C -0.133 4.133 24 C -0.124 4.124 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.183 0.817 29 H 0.183 0.817 30 H 0.159 0.841 31 H 0.000 1.000 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.028 -3.409 -3.936 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.218 6.218 3 C 0.069 3.931 4 C -0.203 4.203 5 C -0.111 4.111 6 C -0.132 4.132 7 N -0.092 5.092 8 C -0.138 4.138 9 C 0.350 3.650 10 O -0.452 6.452 11 N -0.314 5.314 12 C 0.130 3.870 13 C -0.538 4.538 14 H 0.046 0.954 15 C -0.165 4.165 16 N -0.555 5.555 17 Si 0.764 3.236 18 H -0.207 1.207 19 H -0.203 1.203 20 H -0.206 1.206 21 C -0.005 4.005 22 C -0.126 4.126 23 C -0.190 4.190 24 C -0.181 4.181 25 H 0.093 0.907 26 H 0.131 0.869 27 H 0.089 0.911 28 H 0.200 0.800 29 H 0.200 0.800 30 H 0.177 0.823 31 H 0.018 0.982 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.198 -4.037 -3.936 12.537 hybrid contribution -0.541 0.791 1.136 1.487 sum -11.739 -3.246 -2.800 12.497 Atomic orbital electron populations 1.23487 0.76538 1.05672 1.02741 1.86366 1.23281 1.25315 1.86826 1.20246 0.91853 0.86842 0.94151 1.22014 1.02198 0.90398 1.05720 1.22602 0.94521 0.99843 0.94086 1.23232 0.92696 0.96819 1.00458 1.68610 1.37923 0.97513 1.05177 1.20818 0.89399 0.93402 1.10173 1.17979 0.82491 0.87623 0.76897 1.90652 1.72272 1.28768 1.53483 1.48161 1.05384 1.09096 1.68805 1.19619 0.91549 0.78796 0.97004 1.21233 1.37190 1.03071 0.92336 0.95434 1.25261 0.95575 0.96613 0.99069 1.70008 1.41212 1.13698 1.30537 0.85970 0.77911 0.77814 0.81952 1.20659 1.20288 1.20617 1.21577 0.94998 0.86708 0.97243 1.21454 0.97007 0.99201 0.94982 1.21693 0.98223 0.96362 1.02766 1.21617 0.96236 1.00000 1.00255 0.90707 0.86862 0.91054 0.80010 0.80006 0.82329 0.98222 0.91095 0.92919 0.91306 0.91187 0.92390 0.92030 0.90960 0.92204 0.91228 0.93116 0.96103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.83 113.37 1.11 1.31 16 2 O -0.31 -10.64 8.57 -68.70 -0.59 -11.23 16 3 C 0.12 4.33 6.71 22.94 0.15 4.48 16 4 C -0.18 -4.60 9.13 22.55 0.21 -4.39 16 5 C -0.09 -2.33 10.10 22.41 0.23 -2.11 16 6 C 0.03 1.04 11.17 84.89 0.95 1.99 16 7 N -0.38 -17.23 4.91 -184.62 -0.91 -18.13 16 8 C 0.00 -0.02 6.63 41.93 0.28 0.26 16 9 C 0.56 27.15 6.33 86.78 0.55 27.70 16 10 O -0.57 -28.19 13.82 17.06 0.24 -27.95 16 11 N -0.59 -28.00 2.30 -829.57 -1.91 -29.91 16 12 C 0.25 13.22 4.80 85.63 0.41 13.63 16 13 C -0.50 -27.98 7.85 25.60 0.20 -27.78 16 14 H 0.03 1.62 7.81 -2.91 -0.02 1.60 16 15 C 0.03 1.87 5.46 84.65 0.46 2.33 16 16 N -0.91 -51.56 13.29 21.45 0.28 -51.27 16 17 Si 0.94 44.01 29.54 68.60 2.03 46.04 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 21 C 0.12 4.82 4.92 86.38 0.42 5.25 16 22 C -0.11 -3.68 3.12 -10.79 -0.03 -3.71 16 23 C -0.13 -3.48 9.19 71.98 0.66 -2.82 16 24 C -0.12 -4.23 8.10 71.98 0.58 -3.65 16 25 H 0.07 1.15 7.70 -2.39 -0.02 1.13 16 26 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.07 1.15 7.70 -2.38 -0.02 1.13 16 28 H 0.18 2.95 6.46 -2.91 -0.02 2.93 16 29 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.16 5.50 8.06 -2.91 -0.02 5.48 16 31 H 0.00 -0.01 8.01 -2.38 -0.02 -0.03 16 32 H 0.07 3.93 5.31 -2.55 -0.01 3.91 16 33 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.07 2.81 8.11 -2.39 -0.02 2.79 16 35 H 0.07 2.89 7.23 -2.38 -0.02 2.88 16 36 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 42 H 0.02 0.80 7.05 -2.38 -0.02 0.79 16 Total: -1.00 -71.99 343.80 6.33 -65.66 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.00 Total: 14.30 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.19 Total: 12.50 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -2.53 Total: -99.32 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.35 Total: -39.18 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.99 6.33 -65.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.561 kcal (2) G-P(sol) polarization free energy of solvation -71.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds