Wall clock time and date at job start Tue Mar 31 2020 07:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00040 * 2 1 4 4 H 1.09004 * 109.47185 * 25.77467 * 3 2 1 5 5 C 1.53000 * 109.47548 * 265.77533 * 3 2 1 6 6 C 1.52999 * 109.47505 * 173.91319 * 5 3 2 7 7 C 1.53003 * 109.46766 * 295.42413 * 6 5 3 8 8 C 1.52994 * 109.47470 * 175.42115 * 6 5 3 9 9 C 1.50702 * 109.47143 * 145.77403 * 3 2 1 10 10 O 1.21278 * 119.99894 * 13.93130 * 9 3 2 11 11 N 1.34768 * 120.00117 * 193.93304 * 9 3 2 12 12 C 1.39268 * 120.00267 * 184.89065 * 11 9 3 13 13 C 1.39675 * 119.57801 * 185.21291 * 12 11 9 14 14 C 1.38655 * 119.49148 * 179.74785 * 13 12 11 15 15 C 1.38344 * 118.67237 * 0.52062 * 14 13 12 16 16 C 1.40572 * 119.12972 * 359.74552 * 15 14 13 17 17 C 1.41340 * 119.78778 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00112 * 359.97438 * 17 16 15 19 19 C 1.40029 * 119.99810 * 179.97438 * 17 16 15 20 20 N 1.30739 * 120.00231 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99775 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47106 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47128 * 119.99878 * 21 19 17 24 24 H 1.48504 * 109.47104 * 239.99992 * 21 19 17 25 25 N 1.31913 * 119.57157 * 5.48772 * 12 11 9 26 26 H 1.08996 * 109.47101 * 64.93744 * 1 2 3 27 27 H 1.08999 * 109.47086 * 184.93241 * 1 2 3 28 28 H 1.08997 * 109.47029 * 304.93381 * 1 2 3 29 29 H 1.09002 * 109.46843 * 53.90931 * 5 3 2 30 30 H 1.08997 * 109.46840 * 293.91534 * 5 3 2 31 31 H 1.09003 * 109.46847 * 55.42219 * 6 5 3 32 32 H 1.09005 * 109.46609 * 175.73009 * 7 6 5 33 33 H 1.08995 * 109.47180 * 295.73081 * 7 6 5 34 34 H 1.08998 * 109.46967 * 55.73440 * 7 6 5 35 35 H 1.09000 * 109.47235 * 180.02562 * 8 6 5 36 36 H 1.09002 * 109.46847 * 300.00135 * 8 6 5 37 37 H 1.09009 * 109.46805 * 59.99826 * 8 6 5 38 38 H 0.97004 * 119.99987 * 4.89152 * 11 9 3 39 39 H 1.07995 * 120.24923 * 0.02562 * 13 12 11 40 40 H 1.07999 * 120.66461 * 180.26962 * 14 13 12 41 41 H 1.08006 * 120.43575 * 179.76929 * 15 14 13 42 42 H 0.97004 * 119.99744 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3126 2.0138 0.4469 5 6 2.3148 1.7282 -1.4385 6 6 2.7949 3.1809 -1.4525 7 6 1.6626 4.0966 -0.9829 8 6 3.2077 3.5680 -2.8739 9 6 3.2878 1.2865 0.7992 10 8 3.7975 0.2287 1.1028 11 7 3.8638 2.4450 1.1765 12 6 5.0958 2.4310 1.8259 13 6 5.6334 3.6257 2.3102 14 6 6.8576 3.6090 2.9611 15 6 7.5181 2.4016 3.1018 16 6 6.9272 1.2344 2.5874 17 6 7.5902 -0.0065 2.7230 18 1 8.5476 -0.0558 3.2200 19 6 7.0054 -1.1721 2.2127 20 7 5.8465 -1.1124 1.6106 21 14 7.8812 -2.8122 2.3925 22 1 9.1670 -2.6110 3.1075 23 1 7.0262 -3.7477 3.1665 24 1 8.1463 -3.3819 1.0470 25 7 5.7424 1.2905 1.9708 26 1 -0.3633 0.4353 -0.9309 27 1 -0.3633 -1.0239 0.0884 28 1 -0.3633 0.5885 0.8425 29 1 1.4120 1.6380 -2.0426 30 1 3.0926 1.0846 -1.8494 31 1 3.6494 3.2876 -0.7842 32 1 2.0271 5.1220 -0.9202 33 1 0.8371 4.0471 -1.6929 34 1 1.3173 3.7731 -0.0010 35 1 3.5501 4.6028 -2.8837 36 1 4.0143 2.9156 -3.2084 37 1 2.3531 3.4613 -3.5422 38 1 3.4204 3.2886 0.9958 39 1 5.0975 4.5546 2.1826 40 1 7.2887 4.5209 3.3469 41 1 8.4750 2.3563 3.6006 42 1 5.4412 -1.9199 1.2574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:40 Heat of formation + Delta-G solvation = -29.880251 kcal Electronic energy + Delta-G solvation = -24408.839891 eV Core-core repulsion = 20968.962314 eV Total energy + Delta-G solvation = -3439.877577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83337 -38.15052 -36.75448 -36.05646 -33.99786 -32.92589 -30.37933 -30.10811 -28.73852 -27.26490 -26.51422 -25.55705 -24.04117 -21.88596 -21.27783 -20.00254 -19.31845 -17.70128 -16.81338 -16.46306 -15.83772 -15.56737 -14.67748 -14.60298 -14.40891 -14.23973 -13.85163 -13.74610 -13.52503 -13.42186 -12.84422 -12.54105 -12.34745 -12.19873 -11.90195 -11.77623 -11.61859 -11.34250 -11.14985 -11.02149 -10.91069 -10.64987 -10.60487 -10.59369 -10.43097 -9.87746 -9.67284 -9.55522 -8.98116 -8.73336 -7.93846 -7.19008 -6.91868 -6.10254 -4.36650 2.79968 3.09795 3.21242 3.24760 3.29413 3.40622 3.74709 4.10255 4.25574 4.84242 4.86392 4.94139 4.98061 5.01738 5.24688 5.30697 5.34647 5.49502 5.59481 5.65623 5.69881 5.75972 5.80012 5.87874 5.96766 6.07491 6.13747 6.19926 6.32439 6.38054 6.50476 6.69227 6.84418 6.87337 7.21253 7.28075 7.58634 7.65662 7.83610 8.09077 8.23327 8.48663 8.78644 9.08044 9.30352 10.27808 10.52316 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.005918 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.277565 B = 4729.868926 C = 5933.363960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.072 3.928 4 H 0.076 0.924 5 C -0.125 4.125 6 C -0.113 4.113 7 C -0.154 4.154 8 C -0.142 4.142 9 C 0.470 3.530 10 O -0.388 6.388 11 N -0.665 5.665 12 C 0.373 3.627 13 C -0.358 4.358 14 C -0.036 4.036 15 C -0.305 4.305 16 C 0.271 3.729 17 C -0.424 4.424 18 H 0.083 0.917 19 C 0.057 3.943 20 N -0.655 5.655 21 Si 0.896 3.104 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.275 1.275 25 N -0.474 5.474 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 6.710 -6.612 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.010 3.990 4 H 0.093 0.907 5 C -0.163 4.163 6 C -0.132 4.132 7 C -0.211 4.211 8 C -0.199 4.199 9 C 0.250 3.750 10 O -0.249 6.249 11 N -0.316 5.316 12 C 0.134 3.866 13 C -0.384 4.384 14 C -0.060 4.060 15 C -0.328 4.328 16 C 0.146 3.854 17 C -0.455 4.455 18 H 0.101 0.899 19 C -0.172 4.172 20 N -0.273 5.273 21 Si 0.720 3.280 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.201 1.201 25 N -0.193 5.193 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.855 4.721 -6.856 13.679 hybrid contribution 0.173 0.857 0.260 0.912 sum -10.683 5.577 -6.596 13.738 Atomic orbital electron populations 1.22841 0.81523 1.02792 0.99548 1.88077 1.18813 1.25589 1.94795 1.22172 0.94898 0.85890 0.96007 0.90654 1.21967 1.02468 0.96454 0.95436 1.21357 0.99295 0.93976 0.98563 1.21978 0.98423 0.99651 1.01037 1.21766 1.01148 1.01342 0.95660 1.20448 0.86343 0.85545 0.82661 1.91129 1.58845 1.28060 1.46879 1.43615 1.20164 1.08702 1.59093 1.18605 0.85493 0.91248 0.91224 1.20471 1.02253 0.95895 1.19774 1.20547 0.93677 0.96325 0.95457 1.21615 1.02847 0.94012 1.14353 1.18386 0.87397 0.92165 0.87486 1.19622 1.04363 0.90527 1.30983 0.89917 1.26179 0.95111 1.00541 0.95386 1.70291 1.10213 1.28914 1.17903 0.86460 0.80419 0.82395 0.78696 1.18631 1.20041 1.20067 1.68681 1.08766 1.21519 1.20353 0.94292 0.89537 0.94142 0.91193 0.90393 0.89483 0.92231 0.92558 0.92682 0.92582 0.92487 0.92958 0.76734 0.89179 0.88668 0.88598 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.88 101.05 1.10 1.45 16 2 O -0.36 -6.06 9.91 -54.75 -0.54 -6.61 16 3 C 0.07 1.13 2.52 -27.88 -0.07 1.06 16 4 H 0.08 0.97 5.73 -51.93 -0.30 0.67 16 5 C -0.13 -1.69 4.50 -26.73 -0.12 -1.81 16 6 C -0.11 -1.35 2.44 -90.62 -0.22 -1.57 16 7 C -0.15 -1.43 8.71 37.16 0.32 -1.11 16 8 C -0.14 -1.52 9.19 37.15 0.34 -1.18 16 9 C 0.47 9.92 6.86 -10.99 -0.08 9.85 16 10 O -0.39 -10.34 12.46 -13.96 -0.17 -10.51 16 11 N -0.67 -13.32 4.09 -11.40 -0.05 -13.37 16 12 C 0.37 9.21 7.42 -154.97 -1.15 8.06 16 13 C -0.36 -8.10 9.96 -38.89 -0.39 -8.48 16 14 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 15 C -0.31 -7.77 9.83 -38.66 -0.38 -8.15 16 16 C 0.27 7.72 6.55 -85.00 -0.56 7.16 16 17 C -0.42 -11.88 9.14 -37.73 -0.34 -12.22 16 18 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 19 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 20 N -0.65 -18.69 9.09 55.55 0.50 -18.19 16 21 Si 0.90 19.73 29.56 -169.99 -5.02 14.70 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 25 N -0.47 -13.54 5.74 -10.25 -0.06 -13.60 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.42 7.98 -51.93 -0.41 0.01 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.24 5.21 -51.93 -0.27 0.97 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.50 6.18 -51.93 -0.32 0.18 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 38 H 0.40 6.26 6.67 -40.82 -0.27 5.99 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 42 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -33.78 341.19 -8.43 -42.21 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.19 Total: 6.94 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.04 Total: -6.72 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.40 Total: -45.16 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.72 Total: -17.12 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.78 -8.43 -42.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.332 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds