Wall clock time and date at job start Tue Mar 31 2020 07:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00040 * 2 1 4 4 H 1.09004 * 109.47185 * 25.77467 * 3 2 1 5 5 C 1.53000 * 109.47548 * 265.77533 * 3 2 1 6 6 C 1.52999 * 109.47505 * 173.91319 * 5 3 2 7 7 C 1.53003 * 109.46766 * 295.42413 * 6 5 3 8 8 C 1.52994 * 109.47470 * 175.42115 * 6 5 3 9 9 C 1.50702 * 109.47143 * 145.77403 * 3 2 1 10 10 O 1.21278 * 119.99894 * 13.93130 * 9 3 2 11 11 N 1.34768 * 120.00117 * 193.93304 * 9 3 2 12 12 C 1.39268 * 120.00267 * 184.89065 * 11 9 3 13 13 C 1.39675 * 119.57801 * 185.21291 * 12 11 9 14 14 C 1.38655 * 119.49148 * 179.74785 * 13 12 11 15 15 C 1.38344 * 118.67237 * 0.52062 * 14 13 12 16 16 C 1.40572 * 119.12972 * 359.74552 * 15 14 13 17 17 C 1.41340 * 119.78778 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00112 * 359.97438 * 17 16 15 19 19 C 1.40029 * 119.99810 * 179.97438 * 17 16 15 20 20 N 1.30739 * 120.00231 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99775 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47106 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47128 * 119.99878 * 21 19 17 24 24 H 1.48504 * 109.47104 * 239.99992 * 21 19 17 25 25 N 1.31913 * 119.57157 * 5.48772 * 12 11 9 26 26 H 1.08996 * 109.47101 * 64.93744 * 1 2 3 27 27 H 1.08999 * 109.47086 * 184.93241 * 1 2 3 28 28 H 1.08997 * 109.47029 * 304.93381 * 1 2 3 29 29 H 1.09002 * 109.46843 * 53.90931 * 5 3 2 30 30 H 1.08997 * 109.46840 * 293.91534 * 5 3 2 31 31 H 1.09003 * 109.46847 * 55.42219 * 6 5 3 32 32 H 1.09005 * 109.46609 * 175.73009 * 7 6 5 33 33 H 1.08995 * 109.47180 * 295.73081 * 7 6 5 34 34 H 1.08998 * 109.46967 * 55.73440 * 7 6 5 35 35 H 1.09000 * 109.47235 * 180.02562 * 8 6 5 36 36 H 1.09002 * 109.46847 * 300.00135 * 8 6 5 37 37 H 1.09009 * 109.46805 * 59.99826 * 8 6 5 38 38 H 0.97004 * 119.99987 * 4.89152 * 11 9 3 39 39 H 1.07995 * 120.24923 * 0.02562 * 13 12 11 40 40 H 1.07999 * 120.66461 * 180.26962 * 14 13 12 41 41 H 1.08006 * 120.43575 * 179.76929 * 15 14 13 42 42 H 0.97004 * 119.99744 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3126 2.0138 0.4469 5 6 2.3148 1.7282 -1.4385 6 6 2.7949 3.1809 -1.4525 7 6 1.6626 4.0966 -0.9829 8 6 3.2077 3.5680 -2.8739 9 6 3.2878 1.2865 0.7992 10 8 3.7975 0.2287 1.1028 11 7 3.8638 2.4450 1.1765 12 6 5.0958 2.4310 1.8259 13 6 5.6334 3.6257 2.3102 14 6 6.8576 3.6090 2.9611 15 6 7.5181 2.4016 3.1018 16 6 6.9272 1.2344 2.5874 17 6 7.5902 -0.0065 2.7230 18 1 8.5476 -0.0558 3.2200 19 6 7.0054 -1.1721 2.2127 20 7 5.8465 -1.1124 1.6106 21 14 7.8812 -2.8122 2.3925 22 1 9.1670 -2.6110 3.1075 23 1 7.0262 -3.7477 3.1665 24 1 8.1463 -3.3819 1.0470 25 7 5.7424 1.2905 1.9708 26 1 -0.3633 0.4353 -0.9309 27 1 -0.3633 -1.0239 0.0884 28 1 -0.3633 0.5885 0.8425 29 1 1.4120 1.6380 -2.0426 30 1 3.0926 1.0846 -1.8494 31 1 3.6494 3.2876 -0.7842 32 1 2.0271 5.1220 -0.9202 33 1 0.8371 4.0471 -1.6929 34 1 1.3173 3.7731 -0.0010 35 1 3.5501 4.6028 -2.8837 36 1 4.0143 2.9156 -3.2084 37 1 2.3531 3.4613 -3.5422 38 1 3.4204 3.2886 0.9958 39 1 5.0975 4.5546 2.1826 40 1 7.2887 4.5209 3.3469 41 1 8.4750 2.3563 3.6006 42 1 5.4412 -1.9199 1.2574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:40 Heat of formation + Delta-G solvation = -50.489951 kcal Electronic energy + Delta-G solvation = -24409.733594 eV Core-core repulsion = 20968.962314 eV Total energy + Delta-G solvation = -3440.771280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37325 -39.81168 -38.30848 -37.12085 -35.83467 -34.78341 -32.24746 -31.56991 -30.39722 -28.03612 -27.51420 -27.44710 -25.41105 -23.60363 -23.04857 -21.25455 -20.84940 -19.50014 -18.18338 -18.10180 -17.27900 -16.86469 -16.39754 -16.25496 -15.79671 -15.57675 -15.35884 -15.29796 -14.76946 -14.67703 -14.44874 -14.02667 -13.75236 -13.38909 -13.18156 -12.98751 -12.89815 -12.73344 -12.61082 -12.55314 -12.35023 -12.30268 -11.96193 -11.75607 -11.68174 -11.61073 -11.36371 -10.86475 -10.79504 -10.34480 -9.90384 -9.09668 -8.80286 -8.05821 -6.42795 0.90401 1.24876 1.37984 1.50166 1.53468 2.01366 2.09949 2.25345 2.98367 3.02851 3.67833 3.84356 3.89088 4.04719 4.05521 4.08119 4.38157 4.42449 4.49782 4.58121 4.70902 4.73201 4.78937 4.84606 4.87362 4.88537 4.96102 4.97971 5.04020 5.05230 5.10195 5.27240 5.32128 5.42719 5.51299 5.67763 5.83317 5.92225 6.09348 6.19702 6.38041 6.71647 6.84868 7.07023 7.67304 8.34611 8.55924 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.005918 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.277565 B = 4729.868926 C = 5933.363960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.086 3.914 4 H 0.113 0.887 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.150 4.150 8 C -0.140 4.140 9 C 0.459 3.541 10 O -0.451 6.451 11 N -0.649 5.649 12 C 0.348 3.652 13 C -0.344 4.344 14 C -0.033 4.033 15 C -0.328 4.328 16 C 0.236 3.764 17 C -0.466 4.466 18 H 0.087 0.913 19 C 0.010 3.990 20 N -0.694 5.694 21 Si 0.975 3.025 22 H -0.251 1.251 23 H -0.272 1.272 24 H -0.271 1.271 25 N -0.511 5.511 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.418 0.582 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.105 0.895 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 8.887 -7.145 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.024 3.976 4 H 0.130 0.870 5 C -0.155 4.155 6 C -0.130 4.130 7 C -0.207 4.207 8 C -0.198 4.198 9 C 0.242 3.758 10 O -0.317 6.317 11 N -0.302 5.302 12 C 0.110 3.890 13 C -0.369 4.369 14 C -0.057 4.057 15 C -0.351 4.351 16 C 0.111 3.889 17 C -0.497 4.497 18 H 0.105 0.895 19 C -0.215 4.215 20 N -0.313 5.313 21 Si 0.796 3.204 22 H -0.174 1.174 23 H -0.198 1.198 24 H -0.196 1.196 25 N -0.230 5.230 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.258 0.742 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.123 0.877 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.589 6.969 -7.402 16.181 hybrid contribution 0.609 0.380 0.415 0.829 sum -11.980 7.349 -6.986 15.695 Atomic orbital electron populations 1.23117 0.78736 1.03968 1.01580 1.88037 1.21943 1.26532 1.95037 1.22117 0.92574 0.86518 0.96342 0.87007 1.21937 1.02671 0.96842 0.94057 1.21324 0.99415 0.93496 0.98791 1.21964 0.97740 0.99384 1.01605 1.21759 1.01301 1.01447 0.95264 1.21594 0.87610 0.84740 0.81856 1.91117 1.61040 1.30190 1.49314 1.43577 1.18756 1.09851 1.57977 1.19162 0.86905 0.91328 0.91626 1.20979 1.01999 0.96723 1.17243 1.21038 0.93438 0.96940 0.94320 1.21805 1.03703 0.94427 1.15167 1.18889 0.88133 0.93604 0.88304 1.19935 1.05171 0.91606 1.32974 0.89525 1.27064 0.95688 1.04217 0.94548 1.70518 1.11909 1.29401 1.19449 0.85272 0.79325 0.77070 0.78737 1.17436 1.19751 1.19572 1.68642 1.09304 1.23844 1.21241 0.91546 0.88912 0.92742 0.88130 0.93974 0.92285 0.91094 0.90659 0.92273 0.91477 0.94555 0.91002 0.74226 0.84906 0.84355 0.87713 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.88 113.37 1.23 1.69 16 2 O -0.40 -13.42 9.91 -130.32 -1.29 -14.71 16 3 C 0.09 2.61 2.52 29.85 0.08 2.68 16 4 H 0.11 2.53 5.73 -2.39 -0.01 2.51 16 5 C -0.12 -3.01 4.50 30.59 0.14 -2.87 16 6 C -0.11 -2.42 2.44 -10.80 -0.03 -2.44 16 7 C -0.15 -2.18 8.71 71.98 0.63 -1.55 16 8 C -0.14 -2.74 9.19 71.98 0.66 -2.08 16 9 C 0.46 19.82 6.86 87.66 0.60 20.42 16 10 O -0.45 -25.40 12.46 15.63 0.19 -25.20 16 11 N -0.65 -25.89 4.09 -308.37 -1.26 -27.15 16 12 C 0.35 17.32 7.42 133.25 0.99 18.31 16 13 C -0.34 -14.87 9.96 22.72 0.23 -14.64 16 14 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 15 C -0.33 -16.90 9.83 22.86 0.22 -16.67 16 16 C 0.24 14.04 6.55 40.19 0.26 14.31 16 17 C -0.47 -27.38 9.14 23.47 0.21 -27.16 16 18 H 0.09 4.76 7.85 -2.91 -0.02 4.74 16 19 C 0.01 0.56 5.50 85.29 0.47 1.03 16 20 N -0.69 -42.06 9.09 21.84 0.20 -41.86 16 21 Si 0.98 42.46 29.56 68.60 2.03 44.49 16 22 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 N -0.51 -30.37 5.74 -186.35 -1.07 -31.44 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 0.99 7.98 -2.39 -0.02 0.97 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.62 5.21 -2.39 -0.01 1.60 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.81 6.18 -2.39 -0.01 0.80 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.42 12.43 6.67 -92.71 -0.62 11.81 16 39 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 40 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -80.07 341.19 5.13 -74.94 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.41 Total: 31.16 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.92 Total: -10.21 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -2.13 Total: -100.46 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.10 Total: -39.92 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -80.07 5.13 -74.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.453 kcal (2) G-P(sol) polarization free energy of solvation -80.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds