Wall clock time and date at job start Tue Mar 31 2020 07:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99692 * 2 1 4 4 C 1.53004 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47171 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47005 * 59.99889 * 5 4 3 7 7 C 1.53002 * 109.46852 * 299.99781 * 5 4 3 8 8 C 1.50692 * 109.46934 * 179.97438 * 5 4 3 9 9 O 1.21272 * 120.00154 * 0.02562 * 8 5 4 10 10 N 1.34778 * 119.99748 * 179.97438 * 8 5 4 11 11 C 1.39268 * 119.99910 * 185.54058 * 10 8 5 12 12 C 1.39668 * 119.57619 * 174.99505 * 11 10 8 13 13 C 1.38656 * 119.49677 * 180.02562 * 12 11 10 14 14 C 1.38343 * 118.66981 * 359.75013 * 13 12 11 15 15 C 1.40578 * 119.12845 * 0.49318 * 14 13 12 16 16 C 1.41340 * 119.78446 * 179.77073 * 15 14 13 17 17 H 1.07997 * 120.00539 * 5.89118 * 16 15 14 18 18 C 1.40027 * 119.99494 * 185.89098 * 16 15 14 19 19 N 1.30747 * 120.00510 * 5.95325 * 18 16 15 20 20 Si 1.86800 * 119.99882 * 185.94781 * 18 16 15 21 21 H 1.48503 * 109.47279 * 265.00305 * 20 18 16 22 22 H 1.48504 * 109.47201 * 25.00131 * 20 18 16 23 23 H 1.48500 * 109.47348 * 145.00187 * 20 18 16 24 24 N 1.31911 * 119.57646 * 355.01878 * 11 10 8 25 25 H 1.09002 * 109.47380 * 299.99699 * 1 2 3 26 26 H 1.08998 * 109.46883 * 59.99738 * 1 2 3 27 27 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46765 * 60.00248 * 3 2 1 29 29 H 1.08996 * 109.47379 * 300.00354 * 3 2 1 30 30 H 1.09000 * 109.47171 * 59.99744 * 4 3 2 31 31 H 1.09000 * 109.46691 * 300.00134 * 4 3 2 32 32 H 1.09003 * 109.47015 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47451 * 299.99873 * 6 5 4 34 34 H 1.09004 * 109.47221 * 60.00284 * 6 5 4 35 35 H 1.08993 * 109.47566 * 300.00404 * 7 5 4 36 36 H 1.09003 * 109.46810 * 59.99972 * 7 5 4 37 37 H 1.09003 * 109.46964 * 179.97438 * 7 5 4 38 38 H 0.96998 * 120.00585 * 5.53984 * 10 8 5 39 39 H 1.08005 * 120.25230 * 0.02562 * 12 11 10 40 40 H 1.08005 * 120.66414 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.43558 * 180.24693 * 14 13 12 42 42 H 0.97001 * 120.00235 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0013 6 6 3.7056 3.3415 1.2505 7 6 3.7068 3.3421 -1.2480 8 6 5.6599 2.4636 0.0026 9 8 6.1815 1.3688 0.0024 10 7 6.4238 3.5740 0.0028 11 6 7.8076 3.4672 -0.1125 12 6 8.5820 4.6248 -0.2170 13 6 9.9595 4.5166 -0.3322 14 6 10.5283 3.2555 -0.3349 15 6 9.6944 2.1285 -0.2316 16 6 10.2604 0.8334 -0.2378 17 1 11.3335 0.7129 -0.2256 18 6 9.4295 -0.2935 -0.2598 19 7 8.1367 -0.1502 -0.3920 20 14 10.1683 -2.0018 -0.1004 21 1 10.3864 -2.5750 -1.4529 22 1 11.4664 -1.9149 0.6156 23 1 9.2395 -2.8736 0.6628 24 7 8.3700 2.2741 -0.1221 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 3.8575 0.6437 -0.8891 31 1 3.8567 0.6440 0.8909 32 1 4.1486 4.3374 1.2507 33 1 2.6190 3.4275 1.2501 34 1 4.0269 2.8003 2.1405 35 1 4.0287 2.8014 -2.1380 36 1 2.6201 3.4280 -1.2485 37 1 4.1497 4.3381 -1.2473 38 1 6.0099 4.4475 0.0832 39 1 8.1115 5.5970 -0.2081 40 1 10.5765 5.3993 -0.4138 41 1 11.5986 3.1382 -0.4191 42 1 7.5611 -0.9309 -0.4068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:57 Heat of formation + Delta-G solvation = -36.311835 kcal Electronic energy + Delta-G solvation = -23937.841067 eV Core-core repulsion = 20497.684596 eV Total energy + Delta-G solvation = -3440.156471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83601 -38.23826 -37.50783 -35.34030 -34.09837 -32.98249 -30.30035 -29.79519 -28.65942 -27.33634 -26.32523 -25.53389 -24.37995 -22.45757 -21.30662 -20.27794 -18.46767 -17.63574 -16.79477 -16.07843 -16.06698 -15.73800 -14.79637 -14.61846 -14.60839 -14.43525 -13.78205 -13.65665 -13.61682 -13.37998 -12.80252 -12.78852 -12.23378 -11.98781 -11.95772 -11.77342 -11.64531 -11.31712 -11.12931 -11.00317 -10.90294 -10.66989 -10.65517 -10.61017 -10.44951 -9.93173 -9.65186 -9.58593 -8.97448 -8.80798 -7.94950 -7.16852 -6.92757 -6.15338 -4.35822 2.80805 3.09911 3.20628 3.23227 3.29412 3.57109 3.78263 3.99679 4.09671 4.87536 4.91464 4.92158 4.99670 5.12058 5.16131 5.27903 5.35588 5.43988 5.47072 5.53049 5.60055 5.79398 5.86102 5.98147 6.06609 6.09692 6.11878 6.15802 6.40750 6.50670 6.52924 6.73024 6.87030 6.87934 7.13258 7.27544 7.58547 7.65885 7.83810 8.10772 8.23223 8.50772 8.78374 9.07611 9.31562 10.27329 10.50740 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.005203 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.633390 B = 5379.925269 C = 7116.047259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.060 3.940 4 C -0.092 4.092 5 C -0.079 4.079 6 C -0.142 4.142 7 C -0.141 4.141 8 C 0.482 3.518 9 O -0.407 6.407 10 N -0.665 5.665 11 C 0.373 3.627 12 C -0.358 4.358 13 C -0.036 4.036 14 C -0.307 4.307 15 C 0.273 3.727 16 C -0.427 4.427 17 H 0.082 0.918 18 C 0.060 3.940 19 N -0.658 5.658 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.263 1.263 23 H -0.277 1.277 24 N -0.476 5.476 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 4.874 0.667 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.017 4.017 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.200 4.200 7 C -0.199 4.199 8 C 0.263 3.737 9 O -0.270 6.270 10 N -0.312 5.312 11 C 0.134 3.866 12 C -0.384 4.384 13 C -0.061 4.061 14 C -0.330 4.330 15 C 0.148 3.852 16 C -0.458 4.458 17 H 0.100 0.900 18 C -0.169 4.169 19 N -0.277 5.277 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.187 1.187 23 H -0.202 1.202 24 N -0.195 5.195 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.419 2.925 0.698 14.730 hybrid contribution 0.359 0.906 0.026 0.975 sum -14.060 3.831 0.724 14.591 Atomic orbital electron populations 1.22710 0.81522 1.02550 0.99679 1.87916 1.19234 1.28410 1.95349 1.22747 0.94662 0.84295 0.99948 1.21248 0.91419 0.95294 1.05066 1.20752 0.93848 0.96642 0.97019 1.21922 1.01215 0.99994 0.96855 1.21904 1.01054 1.00066 0.96844 1.20453 0.87737 0.85720 0.79766 1.91125 1.72356 1.24225 1.39296 1.43407 1.05024 1.09156 1.73587 1.18615 0.83032 0.91292 0.93654 1.20486 0.94423 0.95614 1.27877 1.20560 0.93626 0.96087 0.95783 1.21620 0.98910 0.93392 1.19052 1.18374 0.86542 0.92601 0.87698 1.19569 0.94138 0.89305 1.42754 0.89981 1.26132 0.94927 1.00668 0.95153 1.70232 1.02772 1.30756 1.23901 0.86516 0.80053 0.82546 0.78930 1.19770 1.18711 1.20205 1.68645 1.11428 1.19008 1.20381 0.94302 0.94293 0.89820 0.93247 0.93205 0.90154 0.90299 0.92203 0.91931 0.91882 0.91853 0.92012 0.92153 0.76956 0.89191 0.88693 0.88612 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.25 10.70 -35.23 -0.38 -5.63 16 3 C 0.06 0.71 5.23 37.16 0.19 0.91 16 4 C -0.09 -1.38 3.93 -26.73 -0.10 -1.49 16 5 C -0.08 -1.12 0.65 -155.66 -0.10 -1.22 16 6 C -0.14 -1.63 8.01 37.16 0.30 -1.34 16 7 C -0.14 -1.67 8.03 37.16 0.30 -1.37 16 8 C 0.48 9.63 6.44 -10.99 -0.07 9.56 16 9 O -0.41 -10.23 11.87 5.56 0.07 -10.17 16 10 N -0.66 -13.08 5.16 -11.40 -0.06 -13.14 16 11 C 0.37 9.16 7.43 -154.97 -1.15 8.01 16 12 C -0.36 -8.13 9.95 -38.89 -0.39 -8.51 16 13 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 14 C -0.31 -7.84 9.83 -38.66 -0.38 -8.22 16 15 C 0.27 7.77 6.53 -85.00 -0.55 7.22 16 16 C -0.43 -11.92 9.13 -37.73 -0.34 -12.27 16 17 H 0.08 2.15 7.85 -52.49 -0.41 1.73 16 18 C 0.06 1.62 5.48 -17.34 -0.10 1.52 16 19 N -0.66 -18.48 9.18 55.55 0.51 -17.97 16 20 Si 0.90 19.62 29.56 -169.99 -5.03 14.59 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 N -0.48 -13.49 5.77 -10.25 -0.06 -13.55 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.52 6.43 -51.93 -0.33 0.18 16 29 H 0.05 0.52 6.43 -51.93 -0.33 0.19 16 30 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 33 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 37 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 38 H 0.40 6.10 7.56 -40.82 -0.31 5.79 16 39 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 41 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 42 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -33.37 341.03 -7.69 -41.06 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.20 Total: 6.68 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.69 Total: -7.02 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.39 Total: -44.66 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.31 Total: -15.80 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.37 -7.69 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.749 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds