Wall clock time and date at job start Tue Mar 31 2020 07:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99692 * 2 1 4 4 C 1.53004 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47171 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47005 * 59.99889 * 5 4 3 7 7 C 1.53002 * 109.46852 * 299.99781 * 5 4 3 8 8 C 1.50692 * 109.46934 * 179.97438 * 5 4 3 9 9 O 1.21272 * 120.00154 * 0.02562 * 8 5 4 10 10 N 1.34778 * 119.99748 * 179.97438 * 8 5 4 11 11 C 1.39268 * 119.99910 * 185.54058 * 10 8 5 12 12 C 1.39668 * 119.57619 * 174.99505 * 11 10 8 13 13 C 1.38656 * 119.49677 * 180.02562 * 12 11 10 14 14 C 1.38343 * 118.66981 * 359.75013 * 13 12 11 15 15 C 1.40578 * 119.12845 * 0.49318 * 14 13 12 16 16 C 1.41340 * 119.78446 * 179.77073 * 15 14 13 17 17 H 1.07997 * 120.00539 * 5.89118 * 16 15 14 18 18 C 1.40027 * 119.99494 * 185.89098 * 16 15 14 19 19 N 1.30747 * 120.00510 * 5.95325 * 18 16 15 20 20 Si 1.86800 * 119.99882 * 185.94781 * 18 16 15 21 21 H 1.48503 * 109.47279 * 265.00305 * 20 18 16 22 22 H 1.48504 * 109.47201 * 25.00131 * 20 18 16 23 23 H 1.48500 * 109.47348 * 145.00187 * 20 18 16 24 24 N 1.31911 * 119.57646 * 355.01878 * 11 10 8 25 25 H 1.09002 * 109.47380 * 299.99699 * 1 2 3 26 26 H 1.08998 * 109.46883 * 59.99738 * 1 2 3 27 27 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46765 * 60.00248 * 3 2 1 29 29 H 1.08996 * 109.47379 * 300.00354 * 3 2 1 30 30 H 1.09000 * 109.47171 * 59.99744 * 4 3 2 31 31 H 1.09000 * 109.46691 * 300.00134 * 4 3 2 32 32 H 1.09003 * 109.47015 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47451 * 299.99873 * 6 5 4 34 34 H 1.09004 * 109.47221 * 60.00284 * 6 5 4 35 35 H 1.08993 * 109.47566 * 300.00404 * 7 5 4 36 36 H 1.09003 * 109.46810 * 59.99972 * 7 5 4 37 37 H 1.09003 * 109.46964 * 179.97438 * 7 5 4 38 38 H 0.96998 * 120.00585 * 5.53984 * 10 8 5 39 39 H 1.08005 * 120.25230 * 0.02562 * 12 11 10 40 40 H 1.08005 * 120.66414 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.43558 * 180.24693 * 14 13 12 42 42 H 0.97001 * 120.00235 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0013 6 6 3.7056 3.3415 1.2505 7 6 3.7068 3.3421 -1.2480 8 6 5.6599 2.4636 0.0026 9 8 6.1815 1.3688 0.0024 10 7 6.4238 3.5740 0.0028 11 6 7.8076 3.4672 -0.1125 12 6 8.5820 4.6248 -0.2170 13 6 9.9595 4.5166 -0.3322 14 6 10.5283 3.2555 -0.3349 15 6 9.6944 2.1285 -0.2316 16 6 10.2604 0.8334 -0.2378 17 1 11.3335 0.7129 -0.2256 18 6 9.4295 -0.2935 -0.2598 19 7 8.1367 -0.1502 -0.3920 20 14 10.1683 -2.0018 -0.1004 21 1 10.3864 -2.5750 -1.4529 22 1 11.4664 -1.9149 0.6156 23 1 9.2395 -2.8736 0.6628 24 7 8.3700 2.2741 -0.1221 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 3.8575 0.6437 -0.8891 31 1 3.8567 0.6440 0.8909 32 1 4.1486 4.3374 1.2507 33 1 2.6190 3.4275 1.2501 34 1 4.0269 2.8003 2.1405 35 1 4.0287 2.8014 -2.1380 36 1 2.6201 3.4280 -1.2485 37 1 4.1497 4.3381 -1.2473 38 1 6.0099 4.4475 0.0832 39 1 8.1115 5.5970 -0.2081 40 1 10.5765 5.3993 -0.4138 41 1 11.5986 3.1382 -0.4191 42 1 7.5611 -0.9309 -0.4068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:57 Heat of formation + Delta-G solvation = -58.137732 kcal Electronic energy + Delta-G solvation = -23938.787509 eV Core-core repulsion = 20497.684596 eV Total energy + Delta-G solvation = -3441.102913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35622 -39.77782 -38.78444 -36.62940 -35.93021 -34.85076 -32.23096 -31.24796 -30.13644 -28.26675 -27.49713 -27.11433 -25.57472 -24.05073 -23.18024 -21.85872 -20.05860 -19.28532 -18.16613 -17.73027 -16.98152 -16.94024 -16.50578 -16.27108 -15.99851 -15.80637 -15.44090 -15.08515 -14.82917 -14.61359 -14.54906 -14.06333 -13.73374 -13.40914 -13.30077 -12.91544 -12.79675 -12.72672 -12.58951 -12.53328 -12.32492 -12.30878 -12.01615 -11.81247 -11.78752 -11.72069 -11.44498 -10.85573 -10.52376 -10.45469 -9.90924 -9.06262 -8.80665 -8.10289 -6.41450 0.92279 1.25201 1.37681 1.49548 1.52709 2.17204 2.24921 2.28517 2.90665 2.98551 3.64580 3.87192 3.89554 4.06130 4.25274 4.27273 4.29275 4.40537 4.46550 4.57326 4.58335 4.72239 4.76364 4.81133 4.86544 4.90622 4.93934 4.96252 4.99534 5.01106 5.07522 5.15866 5.28578 5.37807 5.39200 5.68855 5.87270 5.92823 6.15413 6.29979 6.38327 6.75517 6.86273 7.08011 7.73205 8.35134 8.55116 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.005203 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.633390 B = 5379.925269 C = 7116.047259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.427 6.427 3 C 0.067 3.933 4 C -0.089 4.089 5 C -0.064 4.064 6 C -0.139 4.139 7 C -0.137 4.137 8 C 0.470 3.530 9 O -0.466 6.466 10 N -0.652 5.652 11 C 0.349 3.651 12 C -0.345 4.345 13 C -0.035 4.035 14 C -0.331 4.331 15 C 0.239 3.761 16 C -0.469 4.469 17 H 0.085 0.915 18 C 0.014 3.986 19 N -0.695 5.695 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.255 1.255 23 H -0.276 1.276 24 N -0.512 5.512 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.419 0.581 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.057 7.235 0.805 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.008 4.008 4 C -0.127 4.127 5 C -0.068 4.068 6 C -0.196 4.196 7 C -0.195 4.195 8 C 0.255 3.745 9 O -0.332 6.332 10 N -0.301 5.301 11 C 0.110 3.890 12 C -0.370 4.370 13 C -0.059 4.059 14 C -0.354 4.354 15 C 0.113 3.887 16 C -0.500 4.500 17 H 0.103 0.897 18 C -0.211 4.211 19 N -0.314 5.314 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.178 1.178 23 H -0.201 1.201 24 N -0.231 5.231 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.257 0.743 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.362 5.355 0.836 17.236 hybrid contribution 0.900 0.347 -0.019 0.964 sum -15.463 5.702 0.817 16.501 Atomic orbital electron populations 1.22932 0.79267 1.03661 1.01187 1.87871 1.21777 1.29376 1.95667 1.22700 0.91788 0.84344 1.02014 1.21157 0.94392 0.95261 1.01875 1.20670 0.89039 0.97006 1.00078 1.21948 1.03561 0.99942 0.94130 1.21927 1.03437 0.99921 0.94174 1.21622 0.90257 0.84847 0.77822 1.91119 1.74060 1.26400 1.41667 1.43391 1.03347 1.10524 1.72825 1.19176 0.85227 0.91187 0.93374 1.20991 0.94433 0.96789 1.24820 1.21049 0.94416 0.96487 0.93924 1.21806 0.99274 0.94035 1.20327 1.18862 0.87453 0.93939 0.88418 1.19882 0.94569 0.90352 1.45215 0.89663 1.26991 0.95191 1.04621 0.94301 1.70435 1.04046 1.31432 1.25451 0.85344 0.79169 0.76941 0.79165 1.18815 1.17818 1.20126 1.68610 1.11721 1.21389 1.21427 0.92681 0.92757 0.89129 0.90879 0.91029 0.93592 0.93436 0.90358 0.88395 0.93659 0.94041 0.88397 0.90463 0.74349 0.84894 0.84483 0.87841 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.43 -11.11 10.70 -148.98 -1.59 -12.71 16 3 C 0.07 1.48 5.23 71.98 0.38 1.86 16 4 C -0.09 -2.72 3.93 30.60 0.12 -2.60 16 5 C -0.06 -1.76 0.65 -52.93 -0.03 -1.80 16 6 C -0.14 -2.78 8.01 71.98 0.58 -2.21 16 7 C -0.14 -2.88 8.03 71.98 0.58 -2.31 16 8 C 0.47 19.22 6.44 87.65 0.56 19.78 16 9 O -0.47 -24.94 11.87 -3.01 -0.04 -24.97 16 10 N -0.65 -25.23 5.16 -308.37 -1.59 -26.82 16 11 C 0.35 17.19 7.43 133.25 0.99 18.18 16 12 C -0.35 -14.87 9.95 22.72 0.23 -14.64 16 13 C -0.03 -1.53 10.15 22.39 0.23 -1.30 16 14 C -0.33 -17.15 9.83 22.87 0.22 -16.92 16 15 C 0.24 14.17 6.53 40.20 0.26 14.43 16 16 C -0.47 -27.54 9.13 23.47 0.21 -27.32 16 17 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 18 C 0.01 0.81 5.48 85.29 0.47 1.27 16 19 N -0.69 -41.52 9.18 21.84 0.20 -41.32 16 20 Si 0.97 42.29 29.56 68.60 2.03 44.32 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 24 N -0.51 -30.18 5.77 -186.36 -1.08 -31.25 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.26 6.43 -2.38 -0.02 1.24 16 29 H 0.07 1.26 6.43 -2.39 -0.02 1.24 16 30 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.08 1.30 7.45 -2.39 -0.02 1.28 16 33 H 0.10 1.32 6.43 -2.39 -0.02 1.30 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.38 6.43 -2.39 -0.02 1.37 16 37 H 0.08 1.37 7.70 -2.39 -0.02 1.35 16 38 H 0.42 11.78 7.56 -92.71 -0.70 11.08 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 41 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 42 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 Total: -1.00 -79.67 341.03 4.30 -75.38 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.32 Total: 29.30 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 6.04 Total: -11.93 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -2.47 Total: -99.39 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.63 Total: -37.68 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -79.67 4.30 -75.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.241 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds