Wall clock time and date at job start Tue Mar 31 2020 07:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 114.00036 * 2 1 4 4 H 1.09001 * 109.46381 * 29.99919 * 3 2 1 5 5 C 1.52997 * 109.46746 * 149.99744 * 3 2 1 6 6 C 1.52998 * 109.47329 * 293.87717 * 5 3 2 7 7 C 1.52998 * 109.46945 * 63.58633 * 6 5 3 8 8 C 1.53001 * 109.46950 * 183.58318 * 6 5 3 9 9 C 1.50700 * 109.47048 * 270.00198 * 3 2 1 10 10 O 1.21269 * 119.99568 * 291.08598 * 9 3 2 11 11 N 1.34774 * 120.00316 * 111.08832 * 9 3 2 12 12 C 1.37210 * 120.00009 * 173.70179 * 11 9 3 13 13 H 1.07994 * 119.99882 * 103.84155 * 12 11 9 14 14 C 1.38889 * 119.99905 * 283.83473 * 12 11 9 15 15 N 1.31416 * 120.00250 * 289.10427 * 14 12 11 16 16 Si 1.86804 * 119.99772 * 109.10443 * 14 12 11 17 17 H 1.48504 * 109.46781 * 90.00117 * 16 14 12 18 18 H 1.48501 * 109.47031 * 209.99878 * 16 14 12 19 19 H 1.48495 * 109.47010 * 329.99889 * 16 14 12 20 20 C 1.39426 * 119.99697 * 353.69904 * 11 9 3 21 21 C 1.39070 * 119.69624 * 90.40355 * 20 11 9 22 22 C 1.38382 * 119.09935 * 179.78395 * 21 20 11 23 23 C 1.38831 * 118.49002 * 0.44188 * 22 21 20 24 24 C 1.38141 * 119.31173 * 359.51577 * 23 22 21 25 25 N 1.31885 * 120.85063 * 0.27930 * 24 23 22 26 26 H 1.09006 * 109.47284 * 300.00174 * 1 2 3 27 27 H 1.09011 * 109.47072 * 59.99759 * 1 2 3 28 28 H 1.08993 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47079 * 53.88448 * 5 3 2 30 30 H 1.09001 * 109.46654 * 173.87465 * 5 3 2 31 31 H 1.08996 * 109.47189 * 303.58333 * 6 5 3 32 32 H 1.09001 * 109.47282 * 177.26168 * 7 6 5 33 33 H 1.08999 * 109.47548 * 297.26774 * 7 6 5 34 34 H 1.09006 * 109.47013 * 57.26419 * 7 6 5 35 35 H 1.09004 * 109.46903 * 60.00602 * 8 6 5 36 36 H 1.08999 * 109.47296 * 180.02562 * 8 6 5 37 37 H 1.09003 * 109.47549 * 300.00103 * 8 6 5 38 38 H 0.97004 * 119.99732 * 185.03041 * 15 14 12 39 39 H 1.07997 * 120.44959 * 0.02562 * 21 20 11 40 40 H 1.07996 * 120.75781 * 180.22864 * 22 21 20 41 41 H 1.07996 * 120.33975 * 179.79973 * 23 22 21 42 42 H 1.07999 * 119.57508 * 180.25476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 3.3589 1.2632 0.7213 6 6 3.1360 0.9460 2.2013 7 6 2.5260 -0.4506 2.3372 8 6 4.4751 0.9917 2.9400 9 6 2.2145 1.7644 -1.4208 10 8 3.0470 1.2250 -2.1184 11 7 1.4721 2.7743 -1.9162 12 6 1.7442 3.2783 -3.1630 13 1 1.1110 3.0215 -3.9993 14 6 2.8340 4.1189 -3.3495 15 7 2.8113 5.3411 -2.8670 16 14 4.3319 3.5123 -4.2864 17 1 4.1676 3.8136 -5.7312 18 1 5.5467 4.1952 -3.7733 19 1 4.4723 2.0459 -4.0993 20 6 0.4275 3.3067 -1.1617 21 6 0.6710 4.3753 -0.3055 22 6 -0.3757 4.8970 0.4342 23 6 -1.6329 4.3238 0.2984 24 6 -1.8027 3.2644 -0.5717 25 7 -0.7871 2.7908 -1.2671 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.9858 0.4915 0.2746 30 1 3.8516 2.2310 0.6273 31 1 2.4578 1.6822 2.6326 32 1 2.4122 -0.6962 3.3931 33 1 1.5499 -0.4695 1.8525 34 1 3.1814 -1.1811 1.8629 35 1 4.9096 1.9866 2.8432 36 1 4.3164 0.7652 3.9943 37 1 5.1533 0.2554 2.5087 38 1 3.5400 5.9519 -3.0591 39 1 1.6627 4.7947 -0.2220 40 1 -0.2176 5.7289 1.1044 41 1 -2.4703 4.7052 0.8638 42 1 -2.7797 2.8180 -0.6837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892476302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:48 Heat of formation + Delta-G solvation = -21.484169 kcal Electronic energy + Delta-G solvation = -25080.418642 eV Core-core repulsion = 21640.905147 eV Total energy + Delta-G solvation = -3439.513495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.07608 -38.68841 -37.05864 -35.36078 -34.49351 -32.61720 -31.77487 -29.88570 -29.29372 -26.87990 -25.98058 -25.47748 -23.46568 -22.85678 -22.19241 -19.89120 -19.44639 -17.78075 -16.97617 -16.36418 -15.91373 -15.50718 -15.24588 -14.74022 -14.49967 -14.18129 -14.13221 -13.81600 -13.38345 -13.11209 -12.97587 -12.75985 -12.63347 -12.45398 -12.06649 -12.02241 -11.61361 -11.48041 -11.33469 -11.11522 -10.80740 -10.66475 -10.58082 -10.46057 -10.28570 -10.20380 -9.64941 -9.28021 -9.01798 -8.62294 -8.51749 -7.95999 -7.53877 -6.76430 -4.07822 1.71280 1.87270 3.13280 3.38357 3.59729 3.68551 3.97543 4.33553 4.40638 4.55533 4.58255 5.00175 5.16573 5.21240 5.25686 5.31184 5.46437 5.49851 5.57628 5.72279 5.76250 5.81776 5.83714 5.90961 5.92885 5.94327 6.11765 6.15602 6.22235 6.30999 6.33201 6.36335 6.45954 6.64442 6.67230 6.72977 6.73863 7.14613 7.23324 7.51779 8.42609 8.62139 8.84547 8.97538 9.25857 9.96832 10.02043 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.008418 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.049300 B = 3325.384283 C = 4615.424388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.359 6.359 3 C 0.077 3.923 4 H 0.063 0.937 5 C -0.102 4.102 6 C -0.093 4.093 7 C -0.150 4.150 8 C -0.145 4.145 9 C 0.479 3.521 10 O -0.524 6.524 11 N -0.401 5.401 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.162 3.838 15 N -0.738 5.738 16 Si 0.834 3.166 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.235 1.235 20 C 0.363 3.637 21 C -0.157 4.157 22 C -0.076 4.076 23 C -0.205 4.205 24 C 0.102 3.898 25 N -0.500 5.500 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.276 0.724 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 -1.794 12.027 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.277 6.277 3 C 0.016 3.984 4 H 0.081 0.919 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.207 4.207 8 C -0.203 4.203 9 C 0.266 3.734 10 O -0.400 6.400 11 N -0.125 5.125 12 C -0.572 4.572 13 H 0.100 0.900 14 C -0.066 4.066 15 N -0.359 5.359 16 Si 0.655 3.345 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.157 1.157 20 C 0.141 3.859 21 C -0.180 4.180 22 C -0.103 4.103 23 C -0.225 4.225 24 C -0.057 4.057 25 N -0.212 5.212 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.634 -2.760 11.215 12.108 hybrid contribution 0.488 1.241 -0.005 1.334 sum -3.146 -1.519 11.210 11.742 Atomic orbital electron populations 1.22936 0.81442 1.02166 1.01220 1.87978 1.19470 1.25961 1.94262 1.22287 0.96042 0.85570 0.94532 0.91928 1.21600 0.95281 1.03017 0.94067 1.21079 0.96923 0.98219 0.94890 1.22069 1.03040 0.95800 0.99810 1.21832 0.97182 1.01642 0.99608 1.21437 0.83624 0.79823 0.88543 1.90540 1.35300 1.53823 1.60322 1.40675 1.25624 1.30621 1.15563 1.17937 1.17162 1.38746 0.83383 0.89973 1.25553 0.98503 0.91109 0.91462 1.70774 1.28951 1.03438 1.32754 0.87627 0.81997 0.84741 0.80131 1.20366 1.21410 1.15740 1.19582 0.88463 0.90809 0.87071 1.22266 1.00705 0.97815 0.97172 1.21414 0.92641 0.98278 0.97944 1.21894 0.97882 0.99823 1.02904 1.22456 0.97052 0.93766 0.92387 1.67502 0.99958 1.31336 1.22421 0.94882 0.91653 0.90182 0.89977 0.90812 0.91861 0.94280 0.90320 0.92860 0.92897 0.93011 0.92653 0.91303 0.84973 0.85717 0.85837 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.08 101.05 1.02 1.33 16 2 O -0.36 -6.91 7.37 -35.46 -0.26 -7.17 16 3 C 0.08 1.55 2.14 -27.88 -0.06 1.49 16 4 H 0.06 1.21 5.73 -51.93 -0.30 0.92 16 5 C -0.10 -1.81 4.31 -26.73 -0.12 -1.92 16 6 C -0.09 -1.32 2.94 -90.62 -0.27 -1.58 16 7 C -0.15 -2.08 8.40 37.16 0.31 -1.76 16 8 C -0.15 -1.77 9.19 37.16 0.34 -1.42 16 9 C 0.48 12.00 6.67 -10.99 -0.07 11.93 16 10 O -0.52 -14.84 15.27 5.34 0.08 -14.76 16 11 N -0.40 -10.29 2.63 -60.71 -0.16 -10.45 16 12 C -0.45 -12.82 8.20 -14.90 -0.12 -12.95 16 13 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 14 C 0.16 4.33 5.32 -17.49 -0.09 4.24 16 15 N -0.74 -18.95 13.95 55.49 0.77 -18.17 16 16 Si 0.83 20.67 28.70 -169.99 -4.88 15.79 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.23 -6.34 6.65 56.52 0.38 -5.97 16 20 C 0.36 8.16 4.38 -154.64 -0.68 7.48 16 21 C -0.16 -3.14 9.49 -39.22 -0.37 -3.52 16 22 C -0.08 -1.22 10.17 -39.31 -0.40 -1.62 16 23 C -0.20 -2.97 10.11 -39.40 -0.40 -3.37 16 24 C 0.10 1.65 11.18 -17.56 -0.20 1.46 16 25 N -0.50 -10.34 8.70 -12.34 -0.11 -10.44 16 26 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 1.24 6.40 -51.92 -0.33 0.91 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.17 4.89 -51.93 -0.25 0.91 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.28 6.46 8.32 -40.82 -0.34 6.13 16 39 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -31.17 347.00 -6.81 -37.98 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.38 Total: 2.21 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.10 Total: -0.21 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.51 Total: -39.06 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.18 Total: -21.93 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.88 Total: 15.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.17 -6.81 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.493 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds