Wall clock time and date at job start Tue Mar 31 2020 07:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 114.00036 * 2 1 4 4 H 1.09001 * 109.46381 * 29.99919 * 3 2 1 5 5 C 1.52997 * 109.46746 * 149.99744 * 3 2 1 6 6 C 1.52998 * 109.47329 * 293.87717 * 5 3 2 7 7 C 1.52998 * 109.46945 * 63.58633 * 6 5 3 8 8 C 1.53001 * 109.46950 * 183.58318 * 6 5 3 9 9 C 1.50700 * 109.47048 * 270.00198 * 3 2 1 10 10 O 1.21269 * 119.99568 * 291.08598 * 9 3 2 11 11 N 1.34774 * 120.00316 * 111.08832 * 9 3 2 12 12 C 1.37210 * 120.00009 * 173.70179 * 11 9 3 13 13 H 1.07994 * 119.99882 * 103.84155 * 12 11 9 14 14 C 1.38889 * 119.99905 * 283.83473 * 12 11 9 15 15 N 1.31416 * 120.00250 * 289.10427 * 14 12 11 16 16 Si 1.86804 * 119.99772 * 109.10443 * 14 12 11 17 17 H 1.48504 * 109.46781 * 90.00117 * 16 14 12 18 18 H 1.48501 * 109.47031 * 209.99878 * 16 14 12 19 19 H 1.48495 * 109.47010 * 329.99889 * 16 14 12 20 20 C 1.39426 * 119.99697 * 353.69904 * 11 9 3 21 21 C 1.39070 * 119.69624 * 90.40355 * 20 11 9 22 22 C 1.38382 * 119.09935 * 179.78395 * 21 20 11 23 23 C 1.38831 * 118.49002 * 0.44188 * 22 21 20 24 24 C 1.38141 * 119.31173 * 359.51577 * 23 22 21 25 25 N 1.31885 * 120.85063 * 0.27930 * 24 23 22 26 26 H 1.09006 * 109.47284 * 300.00174 * 1 2 3 27 27 H 1.09011 * 109.47072 * 59.99759 * 1 2 3 28 28 H 1.08993 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47079 * 53.88448 * 5 3 2 30 30 H 1.09001 * 109.46654 * 173.87465 * 5 3 2 31 31 H 1.08996 * 109.47189 * 303.58333 * 6 5 3 32 32 H 1.09001 * 109.47282 * 177.26168 * 7 6 5 33 33 H 1.08999 * 109.47548 * 297.26774 * 7 6 5 34 34 H 1.09006 * 109.47013 * 57.26419 * 7 6 5 35 35 H 1.09004 * 109.46903 * 60.00602 * 8 6 5 36 36 H 1.08999 * 109.47296 * 180.02562 * 8 6 5 37 37 H 1.09003 * 109.47549 * 300.00103 * 8 6 5 38 38 H 0.97004 * 119.99732 * 185.03041 * 15 14 12 39 39 H 1.07997 * 120.44959 * 0.02562 * 21 20 11 40 40 H 1.07996 * 120.75781 * 180.22864 * 22 21 20 41 41 H 1.07996 * 120.33975 * 179.79973 * 23 22 21 42 42 H 1.07999 * 119.57508 * 180.25476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 3.3589 1.2632 0.7213 6 6 3.1360 0.9460 2.2013 7 6 2.5260 -0.4506 2.3372 8 6 4.4751 0.9917 2.9400 9 6 2.2145 1.7644 -1.4208 10 8 3.0470 1.2250 -2.1184 11 7 1.4721 2.7743 -1.9162 12 6 1.7442 3.2783 -3.1630 13 1 1.1110 3.0215 -3.9993 14 6 2.8340 4.1189 -3.3495 15 7 2.8113 5.3411 -2.8670 16 14 4.3319 3.5123 -4.2864 17 1 4.1676 3.8136 -5.7312 18 1 5.5467 4.1952 -3.7733 19 1 4.4723 2.0459 -4.0993 20 6 0.4275 3.3067 -1.1617 21 6 0.6710 4.3753 -0.3055 22 6 -0.3757 4.8970 0.4342 23 6 -1.6329 4.3238 0.2984 24 6 -1.8027 3.2644 -0.5717 25 7 -0.7871 2.7908 -1.2671 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.9858 0.4915 0.2746 30 1 3.8516 2.2310 0.6273 31 1 2.4578 1.6822 2.6326 32 1 2.4122 -0.6962 3.3931 33 1 1.5499 -0.4695 1.8525 34 1 3.1814 -1.1811 1.8629 35 1 4.9096 1.9866 2.8432 36 1 4.3164 0.7652 3.9943 37 1 5.1533 0.2554 2.5087 38 1 3.5400 5.9519 -3.0591 39 1 1.6627 4.7947 -0.2220 40 1 -0.2176 5.7289 1.1044 41 1 -2.4703 4.7052 0.8638 42 1 -2.7797 2.8180 -0.6837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892476302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:47 Heat of formation + Delta-G solvation = -40.706863 kcal Electronic energy + Delta-G solvation = -25081.252200 eV Core-core repulsion = 21640.905147 eV Total energy + Delta-G solvation = -3440.347054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68925 -40.21078 -38.72372 -36.62696 -36.37320 -34.56131 -33.19227 -31.34836 -30.80596 -27.91727 -27.49864 -27.17845 -25.07097 -24.22186 -23.73790 -21.29282 -21.01295 -19.61072 -18.64648 -17.89579 -17.42724 -16.93824 -16.74671 -16.59209 -16.05422 -15.95025 -15.43052 -15.33717 -14.84940 -14.48570 -14.46873 -14.32833 -14.02412 -13.95664 -13.86712 -13.39682 -13.09655 -12.84087 -12.81615 -12.55366 -12.45638 -12.27080 -12.17598 -11.78621 -11.67882 -11.52764 -11.25283 -10.67725 -10.59684 -10.53108 -10.13668 -9.64794 -9.43246 -8.76565 -6.18125 0.31561 0.52951 1.11148 1.32494 1.61872 1.79220 2.00645 2.50332 2.73877 2.93467 3.00228 3.57132 3.79135 3.92400 4.01285 4.09628 4.15753 4.16723 4.38465 4.42375 4.43363 4.49647 4.59785 4.69658 4.72464 4.77299 4.86477 4.90106 4.99495 5.06677 5.09822 5.17554 5.18622 5.27895 5.33964 5.39917 5.48925 5.63273 5.86259 6.03883 6.29596 6.85854 6.89687 7.19742 7.41762 7.96617 8.06512 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.008418 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.049300 B = 3325.384283 C = 4615.424388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.368 6.368 3 C 0.095 3.905 4 H 0.072 0.928 5 C -0.100 4.100 6 C -0.086 4.086 7 C -0.147 4.147 8 C -0.142 4.142 9 C 0.461 3.539 10 O -0.576 6.576 11 N -0.406 5.406 12 C -0.495 4.495 13 H 0.043 0.957 14 C 0.148 3.852 15 N -0.739 5.739 16 Si 0.872 3.128 17 H -0.265 1.265 18 H -0.269 1.269 19 H -0.276 1.276 20 C 0.331 3.669 21 C -0.174 4.174 22 C -0.067 4.067 23 C -0.176 4.176 24 C 0.095 3.905 25 N -0.529 5.529 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.290 0.710 39 H 0.113 0.887 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 -0.587 15.438 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.286 6.286 3 C 0.033 3.967 4 H 0.090 0.910 5 C -0.138 4.138 6 C -0.104 4.104 7 C -0.204 4.204 8 C -0.200 4.200 9 C 0.250 3.750 10 O -0.456 6.456 11 N -0.128 5.128 12 C -0.613 4.613 13 H 0.060 0.940 14 C -0.081 4.081 15 N -0.360 5.360 16 Si 0.693 3.307 17 H -0.190 1.190 18 H -0.194 1.194 19 H -0.202 1.202 20 C 0.110 3.890 21 C -0.196 4.196 22 C -0.093 4.093 23 C -0.195 4.195 24 C -0.063 4.063 25 N -0.242 5.242 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.182 0.818 41 H 0.194 0.806 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.551 -1.510 14.627 15.718 hybrid contribution 0.846 0.850 -0.987 1.553 sum -4.705 -0.660 13.640 14.444 Atomic orbital electron populations 1.23065 0.79981 1.03858 1.00867 1.87988 1.21127 1.25408 1.94066 1.22103 0.97439 0.85971 0.91155 0.90974 1.21631 0.93641 1.01949 0.96579 1.21061 0.98524 0.98789 0.92075 1.22019 1.02014 0.95126 1.01233 1.21810 0.95757 1.01779 1.00607 1.22409 0.82787 0.79284 0.90508 1.90487 1.37439 1.55544 1.62122 1.40675 1.26470 1.30456 1.15225 1.17543 1.18967 1.40371 0.84455 0.93957 1.25715 0.98876 0.91161 0.92342 1.70656 1.29736 1.03325 1.32292 0.87009 0.81307 0.81894 0.80446 1.19042 1.19355 1.20178 1.19316 0.88045 0.92302 0.89369 1.22153 1.01405 0.97584 0.98451 1.21858 0.91877 0.98614 0.96923 1.22446 0.98607 0.97544 1.00897 1.23189 0.97183 0.94287 0.91653 1.67397 1.00211 1.32579 1.23972 0.92695 0.94377 0.87512 0.91982 0.91640 0.90758 0.91668 0.91376 0.93953 0.92701 0.90634 0.93031 0.89829 0.86901 0.81762 0.80597 0.80095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.08 113.37 1.14 1.73 16 2 O -0.37 -14.32 7.37 -148.76 -1.10 -15.42 16 3 C 0.09 3.90 2.14 29.85 0.06 3.97 16 4 H 0.07 2.80 5.73 -2.39 -0.01 2.79 16 5 C -0.10 -3.63 4.31 30.59 0.13 -3.50 16 6 C -0.09 -2.31 2.94 -10.79 -0.03 -2.35 16 7 C -0.15 -3.78 8.40 71.98 0.60 -3.18 16 8 C -0.14 -3.17 9.19 71.98 0.66 -2.51 16 9 C 0.46 24.49 6.67 87.66 0.58 25.08 16 10 O -0.58 -35.10 15.27 -2.78 -0.04 -35.15 16 11 N -0.41 -21.96 2.63 -464.39 -1.22 -23.17 16 12 C -0.50 -29.82 8.20 84.01 0.69 -29.13 16 13 H 0.04 2.81 8.06 -2.91 -0.02 2.79 16 14 C 0.15 8.24 5.32 84.91 0.45 8.69 16 15 N -0.74 -38.62 13.95 21.65 0.30 -38.32 16 16 Si 0.87 44.41 28.70 68.60 1.97 46.38 16 17 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.28 -15.98 6.65 99.48 0.66 -15.32 16 20 C 0.33 15.12 4.38 132.91 0.58 15.70 16 21 C -0.17 -6.81 9.49 22.50 0.21 -6.59 16 22 C -0.07 -1.85 10.17 22.45 0.23 -1.62 16 23 C -0.18 -4.14 10.11 22.39 0.23 -3.91 16 24 C 0.09 2.76 11.18 84.66 0.95 3.71 16 25 N -0.53 -21.65 8.70 -192.96 -1.68 -23.33 16 26 H 0.05 1.52 8.09 -2.38 -0.02 1.50 16 27 H 0.04 1.46 6.40 -2.38 -0.02 1.44 16 28 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.06 2.47 8.12 -2.39 -0.02 2.45 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.90 4.89 -2.39 -0.01 1.89 16 34 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.05 1.19 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.29 13.57 8.32 -92.71 -0.77 12.80 16 39 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -74.97 347.00 5.68 -69.29 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.95 Total: 13.65 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 6.49 Total: 6.07 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.60 Total: -84.82 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -1.14 Total: -50.57 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.97 Total: 46.38 kcal Total: -74.97 5.68 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.579 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds