Wall clock time and date at job start Tue Mar 31 2020 07:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47002 * 2 1 4 4 C 1.50699 * 109.47115 * 180.02562 * 3 2 1 5 5 C 1.31005 * 119.99715 * 126.58608 * 4 3 2 6 6 C 1.50697 * 120.00479 * 6.94497 * 5 4 3 7 7 O 1.45191 * 109.47216 * 135.95993 * 6 5 4 8 8 C 1.34755 * 117.00192 * 180.02562 * 7 6 5 9 9 O 1.21522 * 120.00052 * 0.02562 * 8 7 6 10 10 C 1.47291 * 119.99962 * 180.02562 * 8 7 6 11 11 C 1.41340 * 126.42931 * 359.68390 * 10 8 7 12 12 N 1.30433 * 108.01169 * 179.82112 * 11 10 8 13 13 N 1.39926 * 108.91574 * 0.44569 * 12 11 10 14 14 C 1.46504 * 125.73908 * 179.75241 * 13 12 11 15 15 C 1.50702 * 109.46698 * 269.95890 * 14 13 12 16 16 H 1.07995 * 120.00309 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99891 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00010 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46848 * 90.00042 * 19 17 15 21 21 H 1.48491 * 109.46805 * 209.99910 * 19 17 15 22 22 H 1.48497 * 109.46983 * 329.99746 * 19 17 15 23 23 C 1.34216 * 108.51885 * 359.71291 * 13 12 11 24 24 C 1.50697 * 126.29774 * 179.97438 * 23 13 12 25 25 H 1.08994 * 109.47386 * 59.99911 * 1 2 3 26 26 H 1.08996 * 109.46707 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46692 * 300.00145 * 1 2 3 28 28 H 1.08996 * 109.47346 * 119.99538 * 2 1 3 29 29 H 1.09002 * 109.47290 * 240.00570 * 2 1 3 30 30 H 1.09004 * 109.47285 * 300.00126 * 3 2 1 31 31 H 1.08998 * 109.47031 * 59.99858 * 3 2 1 32 32 H 1.08001 * 120.00202 * 306.58449 * 4 3 2 33 33 H 1.08003 * 119.99761 * 186.94837 * 5 4 3 34 34 H 1.08997 * 109.47408 * 255.96906 * 6 5 4 35 35 H 1.09009 * 109.46431 * 15.96681 * 6 5 4 36 36 H 1.07998 * 125.99080 * 0.02562 * 11 10 8 37 37 H 1.08998 * 109.47492 * 29.95148 * 14 13 12 38 38 H 1.08995 * 109.47016 * 149.95623 * 14 13 12 39 39 H 0.96994 * 119.99894 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.47436 * 269.99857 * 24 23 13 41 41 H 1.09000 * 109.47188 * 30.00286 * 24 23 13 42 42 H 1.09005 * 109.47426 * 149.99762 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2016 2.1190 -0.9118 6 6 3.4560 3.0208 -1.8614 7 8 4.1653 4.2812 -1.9894 8 6 3.6265 5.2061 -2.8080 9 8 2.5918 4.9661 -3.3984 10 6 4.2916 6.5080 -2.9872 11 6 5.4889 6.9313 -2.3666 12 7 5.7533 8.1391 -2.7820 13 7 4.7480 8.5448 -3.6667 14 6 4.6781 9.8407 -4.3464 15 6 3.9097 10.8154 -3.4916 16 1 3.5128 10.5009 -2.5377 17 6 3.7125 12.1085 -3.9278 18 7 4.1954 12.4913 -5.0897 19 14 2.7594 13.3164 -2.8686 20 1 3.6974 14.0286 -1.9640 21 1 2.0687 14.3007 -3.7399 22 1 1.7547 12.5802 -2.0601 23 6 3.8590 7.5467 -3.7885 24 6 2.6171 7.5573 -4.6419 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 4.0874 0.8851 0.7501 33 1 5.2756 2.0302 -0.9825 34 1 3.3865 2.5421 -2.8382 35 1 2.4535 3.2057 -1.4752 36 1 6.0826 6.3544 -1.6731 37 1 5.6868 10.2193 -4.5117 38 1 4.1732 9.7214 -5.3049 39 1 4.0570 13.4011 -5.3964 40 1 1.7798 7.9428 -4.0603 41 1 2.7793 8.1942 -5.5115 42 1 2.3939 6.5425 -4.9715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893062351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:49 Heat of formation + Delta-G solvation = -18.114883 kcal Electronic energy + Delta-G solvation = -22344.769316 eV Core-core repulsion = 18905.401924 eV Total energy + Delta-G solvation = -3439.367392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.87975 -39.62372 -37.17986 -35.82638 -33.93490 -33.12511 -32.14691 -31.25164 -28.38215 -27.33576 -26.73870 -25.58665 -23.55584 -22.31766 -21.95935 -20.29355 -19.13011 -18.65195 -17.42597 -16.81035 -16.60396 -16.14079 -15.50296 -15.23512 -14.74532 -14.49355 -14.44570 -13.99530 -13.64359 -13.40752 -12.94938 -12.86398 -12.77625 -12.52440 -12.44627 -12.14900 -11.86290 -11.83101 -11.54999 -11.50321 -11.15071 -11.04233 -10.92343 -10.90750 -10.46230 -10.41997 -10.29989 -9.96581 -9.82163 -9.25789 -8.73356 -8.64824 -8.06890 -6.36107 -4.44108 1.75465 1.92491 2.71891 2.98928 3.17302 3.23756 3.27771 3.45955 3.68201 4.22495 4.43439 4.66858 4.76281 4.78963 4.98481 5.02266 5.12283 5.15887 5.18960 5.29037 5.35346 5.47591 5.49239 5.53377 5.63398 5.68831 5.75608 5.86096 5.95873 6.00595 6.04104 6.32167 6.35832 6.37746 6.51013 6.72347 6.79183 6.87129 7.13350 7.51769 7.71021 7.74096 8.19095 8.35226 8.61207 9.22944 10.72152 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.002724 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.782724 B =10276.143341 C =10668.670904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.141 4.141 5 C -0.157 4.157 6 C 0.092 3.908 7 O -0.352 6.352 8 C 0.551 3.449 9 O -0.531 6.531 10 C -0.319 4.319 11 C 0.081 3.919 12 N -0.297 5.297 13 N -0.311 5.311 14 C 0.250 3.750 15 C -0.541 4.541 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.909 3.091 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.172 3.828 24 C -0.096 4.096 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.185 0.815 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 -20.845 6.716 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.147 4.147 4 C -0.159 4.159 5 C -0.175 4.175 6 C 0.018 3.982 7 O -0.270 6.270 8 C 0.399 3.601 9 O -0.422 6.422 10 C -0.332 4.332 11 C -0.106 4.106 12 N -0.117 5.117 13 N -0.087 5.087 14 C 0.133 3.867 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.196 1.196 23 C 0.034 3.966 24 C -0.154 4.154 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.202 0.798 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.815 -19.609 6.415 20.823 hybrid contribution -0.938 0.001 0.528 1.077 sum -3.754 -19.608 6.944 21.137 Atomic orbital electron populations 1.21801 0.95702 1.01657 1.02088 1.21442 0.95818 0.96073 1.02138 1.20968 0.92887 0.97570 1.03256 1.22833 0.95940 1.00150 0.96999 1.22544 1.00599 0.97657 0.96693 1.21994 0.95127 0.81627 0.99419 1.86544 1.53214 1.24988 1.62204 1.20054 0.81875 0.83061 0.75154 1.90752 1.24123 1.79904 1.47425 1.18831 1.03956 0.95135 1.15294 1.23924 0.95134 0.92902 0.98690 1.77216 1.12190 1.13499 1.08760 1.49421 1.14734 1.13512 1.30992 1.19907 1.00342 0.74199 0.92224 1.21240 1.35912 0.95472 1.05317 0.91604 1.24928 0.95496 0.97930 0.95295 1.69910 1.44501 1.19127 1.19105 0.86306 0.79871 0.80309 0.79959 1.20207 1.20774 1.19578 1.21451 0.92747 0.87323 0.95094 1.20618 0.92162 1.04303 0.98279 0.92528 0.92719 0.92662 0.91939 0.91885 0.90607 0.90770 0.86436 0.86088 0.90744 0.90195 0.79809 0.92298 0.92436 0.92067 0.89517 0.90465 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 3 C -0.11 -0.87 5.27 -27.88 -0.15 -1.01 16 4 C -0.14 -1.16 9.51 -36.03 -0.34 -1.50 16 5 C -0.16 -1.51 9.90 -36.03 -0.36 -1.87 16 6 C 0.09 1.10 5.34 36.00 0.19 1.29 16 7 O -0.35 -5.32 10.05 -40.64 -0.41 -5.73 16 8 C 0.55 9.67 7.95 34.41 0.27 9.95 16 9 O -0.53 -9.89 14.63 -19.28 -0.28 -10.17 16 10 C -0.32 -6.07 6.13 -105.08 -0.64 -6.71 16 11 C 0.08 1.50 11.87 -16.97 -0.20 1.30 16 12 N -0.30 -6.50 12.50 30.87 0.39 -6.12 16 13 N -0.31 -7.02 3.56 -57.76 -0.21 -7.23 16 14 C 0.25 6.17 5.97 -5.19 -0.03 6.14 16 15 C -0.54 -14.46 9.39 -34.44 -0.32 -14.78 16 16 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 19 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.17 3.50 7.01 -81.59 -0.57 2.92 16 24 C -0.10 -1.68 9.57 36.00 0.34 -1.34 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.66 5.42 -51.93 -0.28 0.38 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.95 5.64 -51.92 -0.29 0.66 16 36 H 0.19 2.69 8.06 -52.49 -0.42 2.27 16 37 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 42 H 0.09 1.54 6.51 -51.93 -0.34 1.20 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -29.43 359.26 -7.34 -36.76 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.26 Total: 0.54 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.69 Total: -5.49 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.92 Total: -36.98 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.69 Total: -15.89 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.43 -7.34 -36.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893062351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.649 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds