Wall clock time and date at job start Tue Mar 31 2020 07:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46793 * 2 1 4 4 C 1.52999 * 109.47099 * 119.99858 * 2 1 3 5 5 N 1.46497 * 109.47117 * 174.56489 * 4 2 1 6 6 C 1.46500 * 120.00031 * 275.32224 * 5 4 2 7 7 C 1.50695 * 109.46823 * 266.78592 * 6 5 4 8 8 H 1.08000 * 120.00145 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00160 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99934 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00241 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47159 * 59.99788 * 11 9 7 13 13 H 1.48500 * 109.47217 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47068 * 299.99999 * 11 9 7 15 15 C 1.34773 * 120.00138 * 95.31857 * 5 4 2 16 16 O 1.21691 * 119.99544 * 3.64775 * 15 5 4 17 17 C 1.46724 * 120.00354 * 183.65275 * 15 5 4 18 18 C 1.36338 * 126.64120 * 343.25074 * 17 15 5 19 19 N 1.33693 * 107.45111 * 180.02562 * 18 17 15 20 20 C 1.30611 * 108.99539 * 359.97438 * 19 18 17 21 21 C 1.50702 * 125.42227 * 180.02562 * 20 19 18 22 22 C 1.52997 * 117.49834 * 351.28270 * 21 20 19 23 23 C 1.53008 * 117.49600 * 59.93910 * 21 20 19 24 24 O 1.33663 * 109.15471 * 0.26525 * 20 19 18 25 25 H 1.08999 * 109.47254 * 299.99934 * 1 2 3 26 26 H 1.09000 * 109.47097 * 60.00410 * 1 2 3 27 27 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46512 * 240.00012 * 2 1 3 29 29 H 1.08997 * 109.47440 * 65.90570 * 3 2 1 30 30 H 1.08999 * 109.47025 * 185.91049 * 3 2 1 31 31 H 1.09005 * 109.47398 * 305.90343 * 3 2 1 32 32 H 1.09001 * 109.46849 * 54.56881 * 4 2 1 33 33 H 1.08992 * 109.47087 * 294.56690 * 4 2 1 34 34 H 1.08998 * 109.47338 * 26.78741 * 6 5 4 35 35 H 1.09001 * 109.47252 * 146.78671 * 6 5 4 36 36 H 0.96997 * 120.00433 * 179.97438 * 10 9 7 37 37 H 1.08001 * 126.27191 * 359.97438 * 18 17 15 38 38 H 1.08996 * 115.55310 * 205.60273 * 21 20 19 39 39 H 1.09004 * 117.50109 * 215.00246 * 22 21 20 40 40 H 1.09004 * 117.50416 * 0.02562 * 22 21 20 41 41 H 1.08995 * 117.49846 * 359.97438 * 23 21 20 42 42 H 1.09001 * 117.49868 * 144.97779 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.4992 -0.8355 1.1856 6 6 4.1158 -1.9462 0.4559 7 6 4.3897 -3.0820 1.4076 8 1 4.1300 -2.9863 2.4516 9 6 4.9718 -4.2434 0.9457 10 7 5.2875 -4.3601 -0.3256 11 14 5.3106 -5.6516 2.1254 12 1 4.0342 -6.1069 2.7324 13 1 5.9358 -6.7774 1.3857 14 1 6.2308 -5.1902 3.1957 15 6 4.2743 0.0810 1.7984 16 8 3.7634 0.9655 2.4597 17 6 5.7341 0.0125 1.6680 18 6 6.4641 -1.0598 1.2481 19 7 7.7524 -0.7035 1.2761 20 6 7.8430 0.5315 1.6913 21 6 9.1258 1.3040 1.8612 22 6 10.4392 0.5323 1.7193 23 6 9.9996 1.5039 0.6212 24 8 6.6172 0.9995 1.9464 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.7656 1.9249 0.9381 30 1 3.1248 1.4443 -0.1058 31 1 1.5929 1.9859 -0.8324 32 1 1.5995 -1.7169 1.2992 33 1 1.7584 -0.1543 2.1365 34 1 3.4398 -2.2849 -0.3292 35 1 5.0525 -1.6122 0.0096 36 1 5.6974 -5.1770 -0.6505 37 1 6.0732 -2.0210 0.9486 38 1 9.0940 2.1137 2.5902 39 1 11.2716 0.8341 2.3551 40 1 10.3756 -0.5341 1.5026 41 1 9.6468 1.0763 -0.3173 42 1 10.5424 2.4451 0.5344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900401321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:49 Heat of formation + Delta-G solvation = 21.515755 kcal Electronic energy + Delta-G solvation = -24143.755160 eV Core-core repulsion = 20706.106282 eV Total energy + Delta-G solvation = -3437.648878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.83014 -39.23944 -37.22261 -36.02192 -34.87557 -33.76850 -32.50604 -29.92451 -27.72995 -26.85396 -26.13958 -24.02418 -23.30104 -22.54537 -22.15747 -20.43204 -19.96367 -19.06553 -17.01552 -16.81996 -16.61785 -16.05580 -15.84965 -14.86509 -14.67804 -14.48630 -14.45303 -14.16341 -13.46289 -13.11581 -12.85716 -12.50587 -12.28688 -12.26535 -11.96826 -11.60796 -11.51230 -11.21875 -11.13658 -11.04114 -10.95500 -10.69234 -10.65902 -10.64568 -10.46029 -10.32236 -10.16468 -10.11226 -9.87588 -9.36243 -8.73930 -8.20710 -7.86277 -6.34768 -4.45191 1.45350 2.65064 2.94782 3.19899 3.24949 3.28176 3.77566 3.84813 3.89008 4.22497 4.51652 4.74245 4.85982 4.94558 4.98180 5.18208 5.24432 5.36342 5.42943 5.55623 5.66988 5.76615 5.84471 5.92541 5.96803 5.97124 6.12101 6.13207 6.20464 6.24003 6.25391 6.33567 6.35456 6.51748 6.62217 6.72023 6.99874 7.16112 7.35949 7.60829 7.83204 8.07288 8.18056 8.61746 8.81112 9.23024 10.69515 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.006952 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.615944 B = 4026.668781 C = 6214.695453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.138 4.138 4 C 0.127 3.873 5 N -0.575 5.575 6 C 0.211 3.789 7 C -0.552 4.552 8 H 0.066 0.934 9 C 0.070 3.930 10 N -0.881 5.881 11 Si 0.899 3.101 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.604 3.396 16 O -0.558 6.558 17 C -0.113 4.113 18 C 0.029 3.971 19 N -0.487 5.487 20 C 0.215 3.785 21 C -0.078 4.078 22 C -0.147 4.147 23 C -0.157 4.157 24 O -0.180 6.180 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.271 0.729 37 H 0.253 0.747 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 8.187 -0.308 8.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.195 4.195 4 C 0.004 3.996 5 N -0.305 5.305 6 C 0.091 3.909 7 C -0.590 4.590 8 H 0.085 0.915 9 C -0.136 4.136 10 N -0.517 5.517 11 Si 0.725 3.275 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.392 3.608 16 O -0.439 6.439 17 C -0.168 4.168 18 C -0.112 4.112 19 N -0.217 5.217 20 C 0.011 3.989 21 C -0.097 4.097 22 C -0.184 4.184 23 C -0.194 4.194 24 O -0.065 6.065 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.269 0.731 38 H 0.148 0.852 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.587 8.200 -0.258 8.602 hybrid contribution -0.396 -0.526 0.769 1.013 sum 2.191 7.674 0.512 7.997 Atomic orbital electron populations 1.21744 0.94935 1.01697 1.01508 1.21524 0.95523 0.96887 0.99384 1.21761 1.00896 0.95639 1.01245 1.21484 0.79191 1.01046 0.97856 1.47743 1.05703 1.25954 1.51118 1.20147 0.95242 0.83047 0.92416 1.21451 1.42299 0.99262 0.96003 0.91536 1.24982 0.94780 0.98379 0.95422 1.69902 1.40221 1.28234 1.13347 0.86511 0.78900 0.81155 0.80889 1.19896 1.20842 1.19754 1.16187 0.82509 0.82133 0.80008 1.90743 1.74575 1.36689 1.41934 1.22759 0.92316 0.89034 1.12660 1.26215 0.86505 1.02760 0.95744 1.70431 1.21974 1.10402 1.18878 1.25351 0.85181 0.90461 0.97955 1.20006 0.84051 1.01687 1.03954 1.23102 0.94244 0.99801 1.01237 1.23126 1.01242 1.01592 0.93477 1.84347 1.16123 1.40086 1.65926 0.92742 0.92818 0.92521 0.90802 0.92326 0.93245 0.93553 0.89990 0.90240 0.93667 0.92970 0.91879 0.73149 0.85156 0.87691 0.86844 0.87899 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 2 C -0.11 -1.76 3.12 -90.62 -0.28 -2.04 16 3 C -0.14 -2.20 8.11 37.15 0.30 -1.90 16 4 C 0.13 2.28 4.95 -4.04 -0.02 2.26 16 5 N -0.58 -12.15 2.28 -176.60 -0.40 -12.55 16 6 C 0.21 4.84 4.70 -5.20 -0.02 4.82 16 7 C -0.55 -13.68 7.38 -34.44 -0.25 -13.93 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.07 1.75 4.99 -17.82 -0.09 1.66 16 10 N -0.88 -22.87 13.29 55.43 0.74 -22.14 16 11 Si 0.90 20.02 29.54 -169.99 -5.02 14.99 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.60 13.71 6.32 -12.83 -0.08 13.63 16 16 O -0.56 -13.35 15.82 2.91 0.05 -13.30 16 17 C -0.11 -2.57 7.02 -36.84 -0.26 -2.83 16 18 C 0.03 0.66 9.37 -17.43 -0.16 0.49 16 19 N -0.49 -10.28 10.79 -10.81 -0.12 -10.40 16 20 C 0.22 4.05 7.86 -12.80 -0.10 3.95 16 21 C -0.08 -1.04 6.33 -91.77 -0.58 -1.62 16 22 C -0.15 -1.63 10.13 -26.70 -0.27 -1.90 16 23 C -0.16 -1.69 10.24 -26.69 -0.27 -1.97 16 24 O -0.18 -3.83 10.79 2.15 0.02 -3.80 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 30 H 0.05 0.90 7.02 -51.93 -0.36 0.53 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 33 H 0.08 1.45 7.22 -51.93 -0.38 1.07 16 34 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.05 1.27 4.63 -51.93 -0.24 1.03 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.25 6.20 3.11 -52.49 -0.16 6.03 16 38 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.11 1.48 7.87 -51.93 -0.41 1.07 16 41 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -28.60 347.01 -7.42 -36.02 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.16 Total: 6.74 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.76 Total: -0.80 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.22 Total: -45.08 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.07 Total: -17.10 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.60 -7.42 -36.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900401321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.538 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds