Wall clock time and date at job start Tue Mar 31 2020 07:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46793 * 2 1 4 4 C 1.52999 * 109.47099 * 119.99858 * 2 1 3 5 5 N 1.46497 * 109.47117 * 174.56489 * 4 2 1 6 6 C 1.46500 * 120.00031 * 275.32224 * 5 4 2 7 7 C 1.50695 * 109.46823 * 266.78592 * 6 5 4 8 8 H 1.08000 * 120.00145 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00160 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99934 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00241 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47159 * 59.99788 * 11 9 7 13 13 H 1.48500 * 109.47217 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47068 * 299.99999 * 11 9 7 15 15 C 1.34773 * 120.00138 * 95.31857 * 5 4 2 16 16 O 1.21691 * 119.99544 * 3.64775 * 15 5 4 17 17 C 1.46724 * 120.00354 * 183.65275 * 15 5 4 18 18 C 1.36338 * 126.64120 * 343.25074 * 17 15 5 19 19 N 1.33693 * 107.45111 * 180.02562 * 18 17 15 20 20 C 1.30611 * 108.99539 * 359.97438 * 19 18 17 21 21 C 1.50702 * 125.42227 * 180.02562 * 20 19 18 22 22 C 1.52997 * 117.49834 * 351.28270 * 21 20 19 23 23 C 1.53008 * 117.49600 * 59.93910 * 21 20 19 24 24 O 1.33663 * 109.15471 * 0.26525 * 20 19 18 25 25 H 1.08999 * 109.47254 * 299.99934 * 1 2 3 26 26 H 1.09000 * 109.47097 * 60.00410 * 1 2 3 27 27 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46512 * 240.00012 * 2 1 3 29 29 H 1.08997 * 109.47440 * 65.90570 * 3 2 1 30 30 H 1.08999 * 109.47025 * 185.91049 * 3 2 1 31 31 H 1.09005 * 109.47398 * 305.90343 * 3 2 1 32 32 H 1.09001 * 109.46849 * 54.56881 * 4 2 1 33 33 H 1.08992 * 109.47087 * 294.56690 * 4 2 1 34 34 H 1.08998 * 109.47338 * 26.78741 * 6 5 4 35 35 H 1.09001 * 109.47252 * 146.78671 * 6 5 4 36 36 H 0.96997 * 120.00433 * 179.97438 * 10 9 7 37 37 H 1.08001 * 126.27191 * 359.97438 * 18 17 15 38 38 H 1.08996 * 115.55310 * 205.60273 * 21 20 19 39 39 H 1.09004 * 117.50109 * 215.00246 * 22 21 20 40 40 H 1.09004 * 117.50416 * 0.02562 * 22 21 20 41 41 H 1.08995 * 117.49846 * 359.97438 * 23 21 20 42 42 H 1.09001 * 117.49868 * 144.97779 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.4992 -0.8355 1.1856 6 6 4.1158 -1.9462 0.4559 7 6 4.3897 -3.0820 1.4076 8 1 4.1300 -2.9863 2.4516 9 6 4.9718 -4.2434 0.9457 10 7 5.2875 -4.3601 -0.3256 11 14 5.3106 -5.6516 2.1254 12 1 4.0342 -6.1069 2.7324 13 1 5.9358 -6.7774 1.3857 14 1 6.2308 -5.1902 3.1957 15 6 4.2743 0.0810 1.7984 16 8 3.7634 0.9655 2.4597 17 6 5.7341 0.0125 1.6680 18 6 6.4641 -1.0598 1.2481 19 7 7.7524 -0.7035 1.2761 20 6 7.8430 0.5315 1.6913 21 6 9.1258 1.3040 1.8612 22 6 10.4392 0.5323 1.7193 23 6 9.9996 1.5039 0.6212 24 8 6.6172 0.9995 1.9464 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.7656 1.9249 0.9381 30 1 3.1248 1.4443 -0.1058 31 1 1.5929 1.9859 -0.8324 32 1 1.5995 -1.7169 1.2992 33 1 1.7584 -0.1543 2.1365 34 1 3.4398 -2.2849 -0.3292 35 1 5.0525 -1.6122 0.0096 36 1 5.6974 -5.1770 -0.6505 37 1 6.0732 -2.0210 0.9486 38 1 9.0940 2.1137 2.5902 39 1 11.2716 0.8341 2.3551 40 1 10.3756 -0.5341 1.5026 41 1 9.6468 1.0763 -0.3173 42 1 10.5424 2.4451 0.5344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900401321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:49 Heat of formation + Delta-G solvation = 4.305319 kcal Electronic energy + Delta-G solvation = -24144.501461 eV Core-core repulsion = 20706.106282 eV Total energy + Delta-G solvation = -3438.395179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.47711 -40.94476 -38.24605 -37.65013 -36.45621 -35.44162 -34.33742 -31.51510 -29.58788 -28.08717 -27.56825 -25.52574 -25.04072 -24.01427 -23.26755 -21.77792 -21.45125 -20.62960 -18.80373 -18.43855 -18.27112 -17.75380 -17.43270 -16.50165 -16.23274 -15.96659 -15.61164 -15.49215 -15.16878 -14.64553 -14.47519 -14.31554 -13.76937 -13.40298 -13.17379 -12.96107 -12.83907 -12.75381 -12.67505 -12.42763 -12.42033 -12.35161 -12.05366 -11.92351 -11.86625 -11.81966 -11.67220 -11.57535 -11.53202 -11.13720 -10.67924 -9.87766 -9.57631 -8.29748 -6.45760 -0.19849 1.08667 1.33736 1.40712 1.42729 1.49529 2.01857 2.30357 2.42294 2.80412 2.99123 3.07019 3.54691 3.74967 3.89109 3.96634 3.99004 4.02250 4.07297 4.13929 4.50664 4.60561 4.62760 4.67793 4.72418 4.76329 4.79396 4.85957 4.91799 4.97470 5.04382 5.06447 5.11414 5.18632 5.25822 5.37754 5.39234 5.41957 5.56420 5.69935 5.89667 6.27884 6.51579 6.66446 7.03275 7.25569 8.73985 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.006952 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.615944 B = 4026.668781 C = 6214.695453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.132 4.132 4 C 0.121 3.879 5 N -0.571 5.571 6 C 0.226 3.774 7 C -0.556 4.556 8 H 0.055 0.945 9 C 0.035 3.965 10 N -0.904 5.904 11 Si 0.950 3.050 12 H -0.267 1.267 13 H -0.276 1.276 14 H -0.278 1.278 15 C 0.600 3.400 16 O -0.577 6.577 17 C -0.137 4.137 18 C 0.023 3.977 19 N -0.511 5.511 20 C 0.235 3.765 21 C -0.106 4.106 22 C -0.135 4.135 23 C -0.138 4.138 24 O -0.190 6.190 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.274 0.726 37 H 0.236 0.764 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 9.010 -0.131 9.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.189 4.189 4 C -0.001 4.001 5 N -0.300 5.300 6 C 0.106 3.894 7 C -0.594 4.594 8 H 0.073 0.927 9 C -0.168 4.168 10 N -0.541 5.541 11 Si 0.775 3.225 12 H -0.192 1.192 13 H -0.201 1.201 14 H -0.204 1.204 15 C 0.388 3.612 16 O -0.460 6.460 17 C -0.191 4.191 18 C -0.117 4.117 19 N -0.241 5.241 20 C 0.030 3.970 21 C -0.125 4.125 22 C -0.172 4.172 23 C -0.175 4.175 24 O -0.076 6.076 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.274 9.000 -0.095 9.578 hybrid contribution -0.509 -0.733 0.694 1.130 sum 2.765 8.267 0.599 8.738 Atomic orbital electron populations 1.21698 0.91996 1.02670 1.02774 1.21488 0.97854 0.95989 0.97457 1.21701 0.99064 0.96261 1.01880 1.21748 0.77359 1.01749 0.99229 1.47783 1.06944 1.25041 1.50281 1.19843 0.94576 0.83031 0.91971 1.21504 1.42362 0.99969 0.95584 0.92713 1.25552 0.94513 1.00155 0.96563 1.69969 1.40796 1.28816 1.14498 0.85713 0.78758 0.78932 0.79083 1.19227 1.20105 1.20373 1.16294 0.82740 0.82176 0.79947 1.90708 1.74930 1.37422 1.42950 1.22743 0.92590 0.89553 1.14260 1.25910 0.87577 1.02288 0.95972 1.70427 1.20976 1.11900 1.20781 1.26627 0.86011 0.89978 0.94346 1.20567 0.82067 1.02950 1.06891 1.23234 0.93648 0.98597 1.01728 1.23274 0.99430 1.03104 0.91720 1.84358 1.16849 1.39981 1.66454 0.92030 0.90997 0.91738 0.91603 0.93083 0.96207 0.90979 0.89458 0.90496 0.94298 0.94259 0.91703 0.74876 0.82301 0.83868 0.89207 0.89682 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.11 -3.31 3.12 -10.79 -0.03 -3.34 16 3 C -0.13 -4.18 8.11 71.98 0.58 -3.59 16 4 C 0.12 4.38 4.95 86.38 0.43 4.80 16 5 N -0.57 -24.92 2.28 -830.85 -1.90 -26.82 16 6 C 0.23 10.74 4.70 85.63 0.40 11.15 16 7 C -0.56 -28.24 7.38 25.60 0.19 -28.05 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.04 1.80 4.99 84.66 0.42 2.22 16 10 N -0.90 -47.60 13.29 21.45 0.28 -47.32 16 11 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 15 C 0.60 28.23 6.32 86.46 0.55 28.78 16 16 O -0.58 -28.36 15.82 -2.13 -0.03 -28.39 16 17 C -0.14 -6.45 7.02 24.05 0.17 -6.28 16 18 C 0.02 1.11 9.37 83.97 0.79 1.90 16 19 N -0.51 -22.08 10.79 -302.89 -3.27 -25.34 16 20 C 0.23 8.82 7.86 88.29 0.69 9.52 16 21 C -0.11 -2.58 6.33 -11.54 -0.07 -2.65 16 22 C -0.14 -2.64 10.13 30.62 0.31 -2.33 16 23 C -0.14 -2.57 10.24 30.62 0.31 -2.26 16 24 O -0.19 -8.23 10.79 -4.83 -0.05 -8.28 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.68 8.05 -2.39 -0.02 1.66 16 30 H 0.02 0.71 7.02 -2.39 -0.02 0.70 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 33 H 0.08 2.83 7.22 -2.39 -0.02 2.82 16 34 H 0.04 1.88 8.05 -2.39 -0.02 1.86 16 35 H 0.04 2.01 4.63 -2.39 -0.01 2.00 16 36 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 37 H 0.24 12.06 3.11 -2.91 -0.01 12.05 16 38 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.14 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.09 2.23 7.87 -2.39 -0.02 2.22 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -63.63 347.01 3.48 -60.15 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 1.02 Total: 25.33 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 5.40 Total: 7.46 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -4.88 Total: -99.48 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.09 Total: -36.67 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -63.63 3.48 -60.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900401321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.454 kcal (2) G-P(sol) polarization free energy of solvation -63.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds