Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46850 * 2 1 4 4 C 1.52997 * 109.47283 * 59.99456 * 3 2 1 5 5 C 1.53001 * 109.46789 * 299.99672 * 3 2 1 6 6 C 1.53001 * 109.46745 * 179.97438 * 3 2 1 7 7 H 1.09002 * 109.46979 * 174.64809 * 6 3 2 8 8 O 1.42902 * 109.47018 * 294.64516 * 6 3 2 9 9 C 1.50700 * 109.47438 * 54.64753 * 6 3 2 10 10 O 1.21273 * 119.99657 * 252.39052 * 9 6 3 11 11 N 1.34775 * 119.99874 * 72.38378 * 9 6 3 12 12 C 1.39266 * 119.99718 * 185.28687 * 11 9 6 13 13 C 1.39676 * 119.57648 * 339.39730 * 12 11 9 14 14 C 1.38651 * 119.49377 * 180.02562 * 13 12 11 15 15 C 1.38346 * 118.67245 * 359.97438 * 14 13 12 16 16 C 1.40572 * 119.12977 * 0.02562 * 15 14 13 17 17 C 1.41334 * 119.78963 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99986 * 8.71148 * 17 16 15 19 19 C 1.40028 * 120.00337 * 188.71002 * 17 16 15 20 20 N 1.30745 * 120.00159 * 193.97914 * 19 17 16 21 21 Si 1.86800 * 119.99862 * 13.97185 * 19 17 16 22 22 H 1.48498 * 109.47339 * 270.00454 * 21 19 17 23 23 H 1.48501 * 109.46971 * 30.00342 * 21 19 17 24 24 H 1.48502 * 109.46697 * 149.99997 * 21 19 17 25 25 N 1.31911 * 119.57405 * 159.69286 * 12 11 9 26 26 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47220 * 300.00432 * 1 2 3 28 28 H 1.09002 * 109.46748 * 60.00848 * 1 2 3 29 29 H 1.08993 * 109.47220 * 239.99567 * 2 1 3 30 30 H 1.09002 * 109.46748 * 119.99152 * 2 1 3 31 31 H 1.09006 * 109.47053 * 179.52836 * 4 3 2 32 32 H 1.08996 * 109.47417 * 299.53110 * 4 3 2 33 33 H 1.09005 * 109.47023 * 59.53460 * 4 3 2 34 34 H 1.08999 * 109.47454 * 306.79384 * 5 3 2 35 35 H 1.09001 * 109.47409 * 66.79924 * 5 3 2 36 36 H 1.09004 * 109.47164 * 186.79542 * 5 3 2 37 37 H 0.96700 * 114.00025 * 60.00204 * 8 6 3 38 38 H 0.96995 * 120.00055 * 5.29377 * 11 9 6 39 39 H 1.07998 * 120.25275 * 0.04481 * 13 12 11 40 40 H 1.08008 * 120.66187 * 179.97438 * 14 13 12 41 41 H 1.08002 * 120.43202 * 180.02562 * 15 14 13 42 42 H 0.96999 * 119.99837 * 354.91849 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2491 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 0.0006 7 1 3.9334 2.4657 -0.0952 8 8 4.0458 0.8809 1.2255 9 6 4.0729 0.6203 -1.1578 10 8 4.5745 -0.4657 -0.9580 11 7 3.9651 1.0917 -2.4158 12 6 4.3278 0.2882 -3.4940 13 6 5.1827 -0.7970 -3.2882 14 6 5.5431 -1.5955 -4.3629 15 6 5.0401 -1.2900 -5.6149 16 6 4.1837 -0.1844 -5.7572 17 6 3.6613 0.1400 -7.0298 18 1 3.8033 -0.5360 -7.8601 19 6 2.9597 1.3377 -7.2141 20 7 2.2474 1.5183 -8.2955 21 14 3.0413 2.6774 -5.9149 22 1 1.9486 2.4783 -4.9292 23 1 4.3522 2.6140 -5.2202 24 1 2.8880 4.0049 -6.5626 25 7 3.8641 0.5653 -4.6974 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.9001 3.1891 1.2533 32 1 0.4400 2.1711 1.2449 33 1 1.8864 1.6452 2.1392 34 1 1.7907 1.5845 -2.1351 35 1 0.4468 2.2702 -1.1907 36 1 1.9892 3.1503 -1.3123 37 1 3.7604 -0.0305 1.3773 38 1 3.6350 1.9906 -2.5703 39 1 5.5600 -1.0126 -2.2995 40 1 6.2034 -2.4391 -4.2253 41 1 5.3019 -1.8932 -6.4717 42 1 2.2633 0.8550 -9.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922161864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -70.158597 kcal Electronic energy + Delta-G solvation = -24568.370033 eV Core-core repulsion = 21126.745856 eV Total energy + Delta-G solvation = -3441.624177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.88535 -38.85148 -37.51504 -35.59061 -34.48838 -33.54493 -31.11460 -30.78796 -29.64850 -27.56851 -27.02475 -25.33144 -24.06805 -22.34410 -21.75474 -20.17737 -19.07765 -18.47465 -17.91732 -16.77455 -16.51920 -15.61632 -15.18998 -15.10121 -14.93798 -14.46505 -13.99355 -13.79667 -13.65493 -13.14066 -12.99705 -12.77070 -12.65740 -12.27983 -12.22959 -12.09489 -12.02003 -11.93241 -11.69835 -11.26560 -11.16074 -10.95148 -10.72018 -10.69412 -10.32521 -10.22362 -9.97301 -9.79350 -9.16070 -8.99852 -8.55644 -7.87410 -7.52812 -7.25152 -4.78873 2.14566 2.63898 2.93218 3.18520 3.42205 3.56361 3.85256 4.13907 4.29310 4.39368 4.45871 4.57394 4.66855 4.82611 5.16511 5.19232 5.27884 5.37610 5.47622 5.48471 5.53248 5.74823 5.77825 5.85117 5.85630 5.95904 5.99214 6.01544 6.05088 6.25427 6.27629 6.43381 6.50344 6.54903 7.09934 7.15154 7.34832 7.41357 7.54365 7.61240 7.74404 8.08659 8.24925 8.38390 8.62721 9.39345 9.95283 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.005818 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.443628 B = 4811.219600 C = 5659.151212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.164 4.164 6 C 0.104 3.896 7 H 0.123 0.877 8 O -0.534 6.534 9 C 0.491 3.509 10 O -0.509 6.509 11 N -0.649 5.649 12 C 0.378 3.622 13 C -0.314 4.314 14 C -0.038 4.038 15 C -0.276 4.276 16 C 0.274 3.726 17 C -0.481 4.481 18 H 0.083 0.917 19 C 0.048 3.952 20 N -0.805 5.805 21 Si 1.142 2.858 22 H -0.286 1.286 23 H -0.279 1.279 24 H -0.328 1.328 25 N -0.593 5.593 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.382 0.618 38 H 0.407 0.593 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 2.246 15.515 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.191 4.191 5 C -0.222 4.222 6 C 0.041 3.959 7 H 0.141 0.859 8 O -0.340 6.340 9 C 0.277 3.723 10 O -0.384 6.384 11 N -0.297 5.297 12 C 0.147 3.853 13 C -0.339 4.339 14 C -0.063 4.063 15 C -0.298 4.298 16 C 0.149 3.851 17 C -0.513 4.513 18 H 0.101 0.899 19 C -0.174 4.174 20 N -0.427 5.427 21 Si 0.976 3.024 22 H -0.214 1.214 23 H -0.206 1.206 24 H -0.260 1.260 25 N -0.318 5.318 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.231 0.769 38 H 0.243 0.757 39 H 0.163 0.837 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.193 4.138 15.923 16.759 hybrid contribution 0.671 -2.561 -0.908 2.799 sum -2.521 1.578 15.015 15.307 Atomic orbital electron populations 1.21830 0.95142 1.01764 1.02108 1.21652 0.96954 0.94841 1.02491 1.21185 0.93071 0.97109 0.97680 1.21808 1.00972 1.00050 0.96319 1.22199 1.02481 1.00445 0.97039 1.21954 0.93462 0.97513 0.83005 0.85926 1.86559 1.77245 1.33585 1.36581 1.21520 0.78938 0.87651 0.84180 1.90580 1.42285 1.21452 1.84093 1.43509 1.63541 1.17696 1.04917 1.18155 0.91641 0.89752 0.85740 1.21824 1.08943 1.01773 1.01352 1.20959 0.96046 0.96649 0.92606 1.21630 1.07547 1.03764 0.96881 1.18185 0.88511 0.87770 0.90603 1.20672 1.30495 1.05618 0.94478 0.89866 1.27668 0.88565 1.00729 1.00456 1.70611 1.27268 1.38255 1.06533 0.82156 0.78228 0.70063 0.71974 1.21365 1.20639 1.26035 1.66185 1.32135 1.34881 0.98585 0.92787 0.92397 0.92157 0.91387 0.91781 0.92428 0.91976 0.91863 0.90990 0.91089 0.91959 0.76853 0.75663 0.83658 0.87687 0.87745 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.21 37.16 0.34 -1.17 16 2 C -0.12 -1.37 4.46 -26.72 -0.12 -1.49 16 3 C -0.09 -0.94 0.41 -154.51 -0.06 -1.00 16 4 C -0.13 -1.15 7.89 37.16 0.29 -0.85 16 5 C -0.16 -1.84 6.75 37.16 0.25 -1.59 16 6 C 0.10 1.24 2.75 -27.88 -0.08 1.17 16 7 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 8 O -0.53 -6.46 12.16 -54.83 -0.67 -7.13 16 9 C 0.49 7.94 5.33 -10.99 -0.06 7.89 16 10 O -0.51 -9.63 12.93 -14.04 -0.18 -9.81 16 11 N -0.65 -11.72 4.13 -11.40 -0.05 -11.77 16 12 C 0.38 8.53 7.52 -154.97 -1.16 7.37 16 13 C -0.31 -7.08 8.92 -38.89 -0.35 -7.43 16 14 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 15 C -0.28 -6.59 9.83 -38.66 -0.38 -6.97 16 16 C 0.27 7.13 6.29 -85.00 -0.53 6.60 16 17 C -0.48 -12.97 9.52 -37.73 -0.36 -13.33 16 18 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 19 C 0.05 1.27 5.52 -17.34 -0.10 1.17 16 20 N -0.80 -21.61 13.65 55.55 0.76 -20.85 16 21 Si 1.14 26.79 25.98 -169.99 -4.42 22.37 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.53 6.39 56.52 0.36 -6.17 16 24 H -0.33 -7.57 7.11 56.52 0.40 -7.17 16 25 N -0.59 -14.74 4.87 -10.26 -0.05 -14.79 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.49 6.44 -51.93 -0.33 0.15 16 28 H 0.06 0.63 6.59 -51.93 -0.34 0.29 16 29 H 0.07 0.98 7.07 -51.93 -0.37 0.61 16 30 H 0.06 0.65 6.89 -51.93 -0.36 0.29 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 6.45 -51.93 -0.34 0.15 16 33 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 34 H 0.07 1.02 6.05 -51.93 -0.31 0.70 16 35 H 0.07 0.72 6.81 -51.93 -0.35 0.37 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.38 4.03 7.21 45.56 0.33 4.36 16 38 H 0.41 6.51 7.20 -40.82 -0.29 6.22 16 39 H 0.15 3.22 5.10 -53.21 -0.27 2.95 16 40 H 0.11 1.98 8.06 -52.48 -0.42 1.56 16 41 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.28 7.32 8.73 -40.82 -0.36 6.97 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -30.07 327.71 -7.56 -37.63 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.19 Total: 10.29 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.71 Total: -10.88 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.66 Total: -47.41 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.85 Total: -16.94 kcal Atomic # 14 Polarization: 26.79 SS G_CDS: -4.42 Total: 22.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.07 -7.56 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922161864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.529 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds