Wall clock time and date at job start Tue Mar 31 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46850 * 2 1 4 4 C 1.52997 * 109.47283 * 59.99456 * 3 2 1 5 5 C 1.53001 * 109.46789 * 299.99672 * 3 2 1 6 6 C 1.53001 * 109.46745 * 179.97438 * 3 2 1 7 7 H 1.09002 * 109.46979 * 174.64809 * 6 3 2 8 8 O 1.42902 * 109.47018 * 294.64516 * 6 3 2 9 9 C 1.50700 * 109.47438 * 54.64753 * 6 3 2 10 10 O 1.21273 * 119.99657 * 252.39052 * 9 6 3 11 11 N 1.34775 * 119.99874 * 72.38378 * 9 6 3 12 12 C 1.39266 * 119.99718 * 185.28687 * 11 9 6 13 13 C 1.39676 * 119.57648 * 339.39730 * 12 11 9 14 14 C 1.38651 * 119.49377 * 180.02562 * 13 12 11 15 15 C 1.38346 * 118.67245 * 359.97438 * 14 13 12 16 16 C 1.40572 * 119.12977 * 0.02562 * 15 14 13 17 17 C 1.41334 * 119.78963 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99986 * 8.71148 * 17 16 15 19 19 C 1.40028 * 120.00337 * 188.71002 * 17 16 15 20 20 N 1.30745 * 120.00159 * 193.97914 * 19 17 16 21 21 Si 1.86800 * 119.99862 * 13.97185 * 19 17 16 22 22 H 1.48498 * 109.47339 * 270.00454 * 21 19 17 23 23 H 1.48501 * 109.46971 * 30.00342 * 21 19 17 24 24 H 1.48502 * 109.46697 * 149.99997 * 21 19 17 25 25 N 1.31911 * 119.57405 * 159.69286 * 12 11 9 26 26 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47220 * 300.00432 * 1 2 3 28 28 H 1.09002 * 109.46748 * 60.00848 * 1 2 3 29 29 H 1.08993 * 109.47220 * 239.99567 * 2 1 3 30 30 H 1.09002 * 109.46748 * 119.99152 * 2 1 3 31 31 H 1.09006 * 109.47053 * 179.52836 * 4 3 2 32 32 H 1.08996 * 109.47417 * 299.53110 * 4 3 2 33 33 H 1.09005 * 109.47023 * 59.53460 * 4 3 2 34 34 H 1.08999 * 109.47454 * 306.79384 * 5 3 2 35 35 H 1.09001 * 109.47409 * 66.79924 * 5 3 2 36 36 H 1.09004 * 109.47164 * 186.79542 * 5 3 2 37 37 H 0.96700 * 114.00025 * 60.00204 * 8 6 3 38 38 H 0.96995 * 120.00055 * 5.29377 * 11 9 6 39 39 H 1.07998 * 120.25275 * 0.04481 * 13 12 11 40 40 H 1.08008 * 120.66187 * 179.97438 * 14 13 12 41 41 H 1.08002 * 120.43202 * 180.02562 * 15 14 13 42 42 H 0.96999 * 119.99837 * 354.91849 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2491 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 0.0006 7 1 3.9334 2.4657 -0.0952 8 8 4.0458 0.8809 1.2255 9 6 4.0729 0.6203 -1.1578 10 8 4.5745 -0.4657 -0.9580 11 7 3.9651 1.0917 -2.4158 12 6 4.3278 0.2882 -3.4940 13 6 5.1827 -0.7970 -3.2882 14 6 5.5431 -1.5955 -4.3629 15 6 5.0401 -1.2900 -5.6149 16 6 4.1837 -0.1844 -5.7572 17 6 3.6613 0.1400 -7.0298 18 1 3.8033 -0.5360 -7.8601 19 6 2.9597 1.3377 -7.2141 20 7 2.2474 1.5183 -8.2955 21 14 3.0413 2.6774 -5.9149 22 1 1.9486 2.4783 -4.9292 23 1 4.3522 2.6140 -5.2202 24 1 2.8880 4.0049 -6.5626 25 7 3.8641 0.5653 -4.6974 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.9001 3.1891 1.2533 32 1 0.4400 2.1711 1.2449 33 1 1.8864 1.6452 2.1392 34 1 1.7907 1.5845 -2.1351 35 1 0.4468 2.2702 -1.1907 36 1 1.9892 3.1503 -1.3123 37 1 3.7604 -0.0305 1.3773 38 1 3.6350 1.9906 -2.5703 39 1 5.5600 -1.0126 -2.2995 40 1 6.2034 -2.4391 -4.2253 41 1 5.3019 -1.8932 -6.4717 42 1 2.2633 0.8550 -9.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922161864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:52 Heat of formation + Delta-G solvation = -88.667677 kcal Electronic energy + Delta-G solvation = -24569.172646 eV Core-core repulsion = 21126.745856 eV Total energy + Delta-G solvation = -3442.426791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.18406 -40.41587 -38.81180 -36.72367 -35.96376 -35.35301 -32.97518 -31.96934 -31.06607 -28.59490 -27.94176 -27.17875 -24.99959 -23.88198 -23.53128 -21.71087 -20.47808 -19.90817 -19.27479 -18.28394 -17.58893 -17.04129 -16.83804 -16.35622 -16.15082 -15.90493 -15.55998 -15.13496 -14.81656 -14.60084 -14.53602 -14.26216 -13.96110 -13.76715 -13.55830 -13.12611 -13.03457 -12.89866 -12.81297 -12.69270 -12.52131 -12.16541 -12.04594 -11.75966 -11.68141 -11.54509 -11.53553 -11.21990 -11.05489 -10.51342 -10.31163 -9.78709 -9.42490 -9.16209 -6.81714 0.48179 0.74300 1.45302 1.51410 1.65834 1.82386 2.00936 2.41425 2.62126 3.17332 3.45199 3.52220 3.55051 3.67782 3.91819 4.08531 4.32163 4.32923 4.38874 4.48137 4.52654 4.64017 4.67085 4.68225 4.79597 4.82604 4.93597 5.04862 5.08755 5.13215 5.19707 5.23059 5.33319 5.37504 5.41091 5.45692 5.53172 5.72235 5.79088 5.92614 6.22515 6.40044 6.49999 6.65015 6.96643 7.50017 7.92525 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.005818 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.443628 B = 4811.219600 C = 5659.151212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.081 4.081 4 C -0.129 4.129 5 C -0.168 4.168 6 C 0.114 3.886 7 H 0.148 0.852 8 O -0.536 6.536 9 C 0.491 3.509 10 O -0.537 6.537 11 N -0.646 5.646 12 C 0.371 3.629 13 C -0.315 4.315 14 C -0.032 4.032 15 C -0.294 4.294 16 C 0.258 3.742 17 C -0.512 4.512 18 H 0.066 0.934 19 C 0.019 3.981 20 N -0.826 5.826 21 Si 1.172 2.828 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.322 1.322 25 N -0.603 5.603 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.388 0.612 38 H 0.417 0.583 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 3.283 18.678 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.082 4.082 4 C -0.186 4.186 5 C -0.225 4.225 6 C 0.051 3.949 7 H 0.165 0.835 8 O -0.342 6.342 9 C 0.280 3.720 10 O -0.414 6.414 11 N -0.294 5.294 12 C 0.139 3.861 13 C -0.339 4.339 14 C -0.056 4.056 15 C -0.316 4.316 16 C 0.133 3.867 17 C -0.544 4.544 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.449 5.449 21 Si 1.002 2.998 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.254 1.254 25 N -0.328 5.328 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.239 0.761 38 H 0.256 0.744 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.131 0.869 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.277 5.176 19.113 20.070 hybrid contribution 0.772 -3.019 -1.724 3.561 sum -2.505 2.157 17.388 17.700 Atomic orbital electron populations 1.21818 0.94131 1.01889 1.02748 1.21645 0.97885 0.95306 1.01127 1.21146 0.91670 0.96700 0.98636 1.21783 1.01650 1.00336 0.94830 1.22238 1.03485 1.00983 0.95824 1.22093 0.94412 0.97524 0.80865 0.83453 1.86562 1.77453 1.34166 1.36007 1.22481 0.77628 0.87603 0.84290 1.90539 1.43517 1.22932 1.84367 1.43600 1.63557 1.17809 1.04454 1.18511 0.91086 0.90334 0.86137 1.22172 1.08319 1.01571 1.01870 1.21346 0.95529 0.97200 0.91535 1.21783 1.07909 1.03711 0.98201 1.18365 0.88915 0.88727 0.90710 1.20665 1.32681 1.06241 0.94863 0.91542 1.28542 0.88074 1.01875 1.01358 1.70643 1.28624 1.38574 1.07100 0.81803 0.78435 0.68708 0.70882 1.19922 1.20826 1.25437 1.66201 1.32432 1.35016 0.99138 0.93047 0.90208 0.92967 0.95199 0.90644 0.91249 0.90889 0.91525 0.94256 0.90068 0.89929 0.76124 0.74447 0.82852 0.84169 0.86937 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.21 71.99 0.66 -2.00 16 2 C -0.12 -2.53 4.46 30.60 0.14 -2.39 16 3 C -0.08 -1.45 0.41 -52.18 -0.02 -1.47 16 4 C -0.13 -1.66 7.89 71.98 0.57 -1.09 16 5 C -0.17 -3.32 6.75 71.98 0.49 -2.84 16 6 C 0.11 2.39 2.75 29.85 0.08 2.47 16 7 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 8 O -0.54 -11.26 12.16 -130.24 -1.58 -12.84 16 9 C 0.49 15.00 5.33 87.66 0.47 15.47 16 10 O -0.54 -19.53 12.93 15.73 0.20 -19.33 16 11 N -0.65 -22.36 4.13 -308.36 -1.27 -23.63 16 12 C 0.37 16.42 7.52 133.25 1.00 17.42 16 13 C -0.32 -13.78 8.92 22.72 0.20 -13.58 16 14 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 15 C -0.29 -14.02 9.83 22.87 0.22 -13.79 16 16 C 0.26 13.63 6.29 40.19 0.25 13.88 16 17 C -0.51 -28.57 9.52 23.47 0.22 -28.35 16 18 H 0.07 3.79 8.06 -2.91 -0.02 3.76 16 19 C 0.02 1.01 5.52 85.29 0.47 1.48 16 20 N -0.83 -45.56 13.65 21.84 0.30 -45.26 16 21 Si 1.17 54.18 25.98 68.60 1.78 55.97 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.90 6.39 99.48 0.64 -12.27 16 24 H -0.32 -14.44 7.11 99.48 0.71 -13.73 16 25 N -0.60 -29.85 4.87 -186.36 -0.91 -30.75 16 26 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.08 1.08 6.44 -2.39 -0.02 1.06 16 28 H 0.05 1.02 6.59 -2.39 -0.02 1.00 16 29 H 0.03 0.84 7.07 -2.39 -0.02 0.82 16 30 H 0.07 1.36 6.89 -2.39 -0.02 1.34 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.82 6.45 -2.39 -0.02 0.80 16 33 H 0.07 0.85 7.56 -2.38 -0.02 0.83 16 34 H 0.04 1.05 6.05 -2.39 -0.01 1.03 16 35 H 0.08 1.43 6.81 -2.39 -0.02 1.42 16 36 H 0.08 1.27 8.14 -2.38 -0.02 1.26 16 37 H 0.39 7.17 7.21 -74.06 -0.53 6.63 16 38 H 0.42 12.59 7.20 -92.71 -0.67 11.92 16 39 H 0.15 6.54 5.10 -14.31 -0.07 6.47 16 40 H 0.14 4.91 8.06 -2.91 -0.02 4.88 16 41 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 42 H 0.28 15.07 8.73 -92.71 -0.81 14.26 16 Total: -1.00 -65.49 327.71 3.20 -62.30 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.31 Total: 29.47 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 4.98 Total: -15.92 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -1.88 Total: -99.65 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.38 Total: -32.17 kcal Atomic # 14 Polarization: 54.18 SS G_CDS: 1.78 Total: 55.97 kcal Total: -65.49 3.20 -62.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922161864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.371 kcal (2) G-P(sol) polarization free energy of solvation -65.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds