Wall clock time and date at job start Tue Mar 31 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46996 * 2 1 4 4 C 1.50701 * 109.47053 * 240.00089 * 2 1 3 5 5 H 1.08004 * 119.99930 * 239.99881 * 4 2 1 6 6 C 1.37878 * 120.00130 * 59.99829 * 4 2 1 7 7 N 1.31512 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99800 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47504 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47413 * 120.00147 * 8 6 4 11 11 H 1.48506 * 109.47217 * 239.99912 * 8 6 4 12 12 C 1.53004 * 109.47447 * 120.00001 * 2 1 3 13 13 N 1.46499 * 109.46832 * 300.00036 * 12 2 1 14 14 C 1.35902 * 124.37940 * 89.99972 * 13 12 2 15 15 O 1.21236 * 128.00172 * 352.17447 * 14 13 12 16 16 C 1.49889 * 103.99413 * 172.15563 * 14 13 12 17 17 H 1.09000 * 110.96026 * 262.93679 * 16 14 13 18 18 C 1.54890 * 115.26133 * 134.71190 * 16 14 13 19 19 H 1.09003 * 117.36577 * 33.21465 * 18 16 14 20 20 C 1.57453 * 99.78391 * 161.57773 * 18 16 14 21 21 C 1.54884 * 102.35323 * 61.03007 * 20 18 16 22 22 C 1.55172 * 106.08834 * 9.42678 * 21 20 18 23 23 H 1.09001 * 115.93257 * 153.58224 * 22 21 20 24 24 C 1.57452 * 101.99643 * 263.29402 * 18 16 14 25 25 N 1.47856 * 108.97209 * 285.98600 * 22 21 20 26 26 C 1.33160 * 150.81575 * 216.98403 * 25 22 21 27 27 O 1.21529 * 124.76988 * 39.50586 * 26 25 22 28 28 H 1.09003 * 109.46875 * 299.99783 * 1 2 3 29 29 H 1.08991 * 109.47270 * 59.99983 * 1 2 3 30 30 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47086 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46999 * 300.00224 * 3 2 1 33 33 H 1.09000 * 109.47230 * 59.99845 * 3 2 1 34 34 H 0.96994 * 119.99913 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47100 * 180.02562 * 12 2 1 36 36 H 1.08998 * 109.47156 * 59.99917 * 12 2 1 37 37 H 1.08998 * 110.82582 * 179.24081 * 20 18 16 38 38 H 1.08995 * 110.82598 * 302.80974 * 20 18 16 39 39 H 1.09009 * 110.12742 * 250.27492 * 21 20 18 40 40 H 1.09002 * 110.12785 * 128.58458 * 21 20 18 41 41 H 1.08993 * 112.18438 * 73.43644 * 24 18 16 42 42 H 1.09001 * 112.18258 * 200.38474 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1484 -2.2856 -3.6038 10 1 1.1679 -1.5867 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 0.3802 -0.3164 3.0720 15 8 -0.5006 -1.0635 2.7033 16 6 0.4292 0.5053 4.3246 17 1 0.7758 -0.0908 5.1687 18 6 -0.8725 1.2740 4.6622 19 1 -1.8171 0.8054 4.3860 20 6 -0.6204 1.5698 6.1880 21 6 0.6687 2.4275 6.1507 22 6 0.9185 2.7637 4.6565 23 1 1.4753 3.6801 4.4608 24 6 -0.5703 2.7031 4.0745 25 7 1.4187 1.5542 3.9688 26 6 2.2070 0.9716 3.0675 27 8 3.3552 1.2967 2.8376 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7089 1.1613 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2493 37 1 -1.4492 2.1343 6.6153 38 1 -0.4547 0.6446 6.7399 39 1 1.5083 1.8604 6.5530 40 1 0.5260 3.3443 6.7227 41 1 -0.6113 2.7174 2.9855 42 1 -1.2051 3.4719 4.5152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924929211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:24 Heat of formation + Delta-G solvation = 1.067205 kcal Electronic energy + Delta-G solvation = -25388.229382 eV Core-core repulsion = 21949.693788 eV Total energy + Delta-G solvation = -3438.535594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64882 -39.23390 -38.02749 -35.97859 -35.06183 -32.62835 -30.91739 -29.77510 -28.44245 -25.90311 -25.79586 -25.49725 -24.98374 -21.96592 -21.64183 -19.78173 -19.55139 -18.64402 -17.26637 -16.57285 -16.23867 -15.98054 -15.67050 -14.96095 -14.78455 -14.52821 -14.16128 -13.79389 -13.62408 -12.93212 -12.78732 -12.53902 -12.14046 -12.01532 -11.75177 -11.52121 -11.40758 -11.23339 -11.14720 -11.12736 -10.97923 -10.69022 -10.67337 -10.41124 -10.26147 -10.14064 -10.04768 -9.68593 -9.43451 -8.84454 -8.70155 -8.49592 -8.31550 -5.95130 -4.06261 2.01857 2.34967 3.24759 3.31002 3.38947 3.42524 3.50711 4.02563 4.21677 4.30097 4.43596 4.49518 4.72131 4.81036 4.97530 5.13940 5.18352 5.31084 5.35736 5.50143 5.60848 5.63538 5.72078 5.80070 5.93631 5.95624 6.06966 6.18248 6.32787 6.48729 6.87176 6.90748 7.05344 7.14509 7.17927 7.49971 7.64027 7.71493 7.75495 7.85113 8.12427 8.19635 8.43830 8.54394 8.93628 9.58761 11.06020 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030101 B = 0.004882 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.990389 B = 5733.731580 C = 5892.255012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.054 3.946 3 C -0.121 4.121 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.128 3.872 13 N -0.575 5.575 14 C 0.524 3.476 15 O -0.465 6.465 16 C 0.042 3.958 17 H 0.120 0.880 18 C -0.089 4.089 19 H 0.125 0.875 20 C -0.122 4.122 21 C -0.136 4.136 22 C 0.185 3.815 23 H 0.123 0.877 24 C -0.144 4.144 25 N -0.649 5.649 26 C 0.744 3.256 27 O -0.526 6.526 28 H 0.001 0.999 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.082 0.918 33 H -0.001 1.001 34 H 0.259 0.741 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 4.063 18.159 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.053 3.947 3 C -0.179 4.179 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.321 5.321 14 C 0.311 3.689 15 O -0.334 6.334 16 C -0.067 4.067 17 H 0.137 0.863 18 C -0.108 4.108 19 H 0.143 0.857 20 C -0.160 4.160 21 C -0.174 4.174 22 C 0.085 3.915 23 H 0.140 0.860 24 C -0.183 4.183 25 N -0.392 5.392 26 C 0.449 3.551 27 O -0.398 6.398 28 H 0.020 0.980 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.936 4.084 17.590 18.482 hybrid contribution 0.414 -0.531 -0.945 1.160 sum -3.522 3.553 16.645 17.381 Atomic orbital electron populations 1.21749 0.97239 0.99220 0.99618 1.18479 0.93185 0.92929 0.90112 1.21744 0.98572 0.98097 0.99508 1.20975 1.31505 1.12060 0.89872 0.92427 1.24878 0.94847 0.94904 0.98830 1.69842 1.36643 1.22742 1.23007 0.86510 0.78585 0.79687 0.83042 1.19771 1.21073 1.21083 1.22218 0.99541 0.95481 0.81885 1.47326 1.20324 1.35744 1.28665 1.20614 0.81214 0.81971 0.85117 1.90751 1.36230 1.36072 1.70366 1.23346 0.93856 0.92229 0.97282 0.86287 1.23942 0.95971 0.95099 0.95824 0.85668 1.23170 0.97444 1.00090 0.95256 1.22848 0.98510 1.01163 0.94894 1.23637 0.91983 0.85367 0.90524 0.85951 1.24773 0.95832 0.96035 1.01638 1.48916 1.32016 1.11625 1.46631 1.15029 0.83767 0.79253 0.77021 1.90929 1.14357 1.67641 1.66891 0.97955 0.90103 0.95247 0.95266 0.89940 0.98222 0.93117 0.90038 0.90378 0.90621 0.90888 0.90570 0.89611 0.89885 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 7.15 37.16 0.27 -2.78 16 2 C 0.05 1.36 0.57 -155.66 -0.09 1.27 16 3 C -0.12 -3.11 7.54 37.16 0.28 -2.83 16 4 C -0.51 -13.76 8.01 -34.44 -0.28 -14.04 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -24.78 9.35 55.43 0.52 -24.27 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.13 2.83 4.78 -4.04 -0.02 2.81 16 13 N -0.57 -11.29 2.17 -121.14 -0.26 -11.55 16 14 C 0.52 9.27 6.48 -10.87 -0.07 9.20 16 15 O -0.46 -9.27 16.61 5.60 0.09 -9.17 16 16 C 0.04 0.55 2.80 -67.36 -0.19 0.36 16 17 H 0.12 1.31 7.37 -51.93 -0.38 0.93 16 18 C -0.09 -0.89 5.16 -84.77 -0.44 -1.32 16 19 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 20 C -0.12 -0.83 6.12 -23.31 -0.14 -0.97 16 21 C -0.14 -0.98 6.12 -24.59 -0.15 -1.13 16 22 C 0.19 1.91 5.81 -62.11 -0.36 1.55 16 23 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 24 C -0.14 -1.45 6.76 -20.38 -0.14 -1.59 16 25 N -0.65 -9.56 3.90 -157.13 -0.61 -10.17 16 26 C 0.74 14.28 6.56 -88.21 -0.58 13.70 16 27 O -0.53 -11.76 17.31 5.34 0.09 -11.67 16 28 H 0.00 0.03 6.06 -51.93 -0.31 -0.28 16 29 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 30 H 0.03 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 33 H 0.00 -0.03 6.34 -51.93 -0.33 -0.36 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.08 1.81 7.85 -51.93 -0.41 1.40 16 36 H 0.08 1.68 8.12 -51.93 -0.42 1.26 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.46 7.75 -51.93 -0.40 0.06 16 39 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -32.02 324.15 -8.54 -40.56 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.23 Total: -0.87 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.00 Total: 5.97 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.36 Total: -45.99 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.19 Total: -20.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.02 -8.54 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924929211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.625 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds