Wall clock time and date at job start Tue Mar 31 2020 07:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46996 * 2 1 4 4 C 1.50701 * 109.47053 * 240.00089 * 2 1 3 5 5 H 1.08004 * 119.99930 * 239.99881 * 4 2 1 6 6 C 1.37878 * 120.00130 * 59.99829 * 4 2 1 7 7 N 1.31512 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99800 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47504 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47413 * 120.00147 * 8 6 4 11 11 H 1.48506 * 109.47217 * 239.99912 * 8 6 4 12 12 C 1.53004 * 109.47447 * 120.00001 * 2 1 3 13 13 N 1.46499 * 109.46832 * 300.00036 * 12 2 1 14 14 C 1.35902 * 124.37940 * 89.99972 * 13 12 2 15 15 O 1.21236 * 128.00172 * 352.17447 * 14 13 12 16 16 C 1.49889 * 103.99413 * 172.15563 * 14 13 12 17 17 H 1.09000 * 110.96026 * 262.93679 * 16 14 13 18 18 C 1.54890 * 115.26133 * 134.71190 * 16 14 13 19 19 H 1.09003 * 117.36577 * 33.21465 * 18 16 14 20 20 C 1.57453 * 99.78391 * 161.57773 * 18 16 14 21 21 C 1.54884 * 102.35323 * 61.03007 * 20 18 16 22 22 C 1.55172 * 106.08834 * 9.42678 * 21 20 18 23 23 H 1.09001 * 115.93257 * 153.58224 * 22 21 20 24 24 C 1.57452 * 101.99643 * 263.29402 * 18 16 14 25 25 N 1.47856 * 108.97209 * 285.98600 * 22 21 20 26 26 C 1.33160 * 150.81575 * 216.98403 * 25 22 21 27 27 O 1.21529 * 124.76988 * 39.50586 * 26 25 22 28 28 H 1.09003 * 109.46875 * 299.99783 * 1 2 3 29 29 H 1.08991 * 109.47270 * 59.99983 * 1 2 3 30 30 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47086 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46999 * 300.00224 * 3 2 1 33 33 H 1.09000 * 109.47230 * 59.99845 * 3 2 1 34 34 H 0.96994 * 119.99913 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47100 * 180.02562 * 12 2 1 36 36 H 1.08998 * 109.47156 * 59.99917 * 12 2 1 37 37 H 1.08998 * 110.82582 * 179.24081 * 20 18 16 38 38 H 1.08995 * 110.82598 * 302.80974 * 20 18 16 39 39 H 1.09009 * 110.12742 * 250.27492 * 21 20 18 40 40 H 1.09002 * 110.12785 * 128.58458 * 21 20 18 41 41 H 1.08993 * 112.18438 * 73.43644 * 24 18 16 42 42 H 1.09001 * 112.18258 * 200.38474 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1484 -2.2856 -3.6038 10 1 1.1679 -1.5867 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 0.3802 -0.3164 3.0720 15 8 -0.5006 -1.0635 2.7033 16 6 0.4292 0.5053 4.3246 17 1 0.7758 -0.0908 5.1687 18 6 -0.8725 1.2740 4.6622 19 1 -1.8171 0.8054 4.3860 20 6 -0.6204 1.5698 6.1880 21 6 0.6687 2.4275 6.1507 22 6 0.9185 2.7637 4.6565 23 1 1.4753 3.6801 4.4608 24 6 -0.5703 2.7031 4.0745 25 7 1.4187 1.5542 3.9688 26 6 2.2070 0.9716 3.0675 27 8 3.3552 1.2967 2.8376 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7089 1.1613 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2493 37 1 -1.4492 2.1343 6.6153 38 1 -0.4547 0.6446 6.7399 39 1 1.5083 1.8604 6.5530 40 1 0.5260 3.3443 6.7227 41 1 -0.6113 2.7174 2.9855 42 1 -1.2051 3.4719 4.5152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924929211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:23 Heat of formation + Delta-G solvation = -18.882840 kcal Electronic energy + Delta-G solvation = -25389.094481 eV Core-core repulsion = 21949.693788 eV Total energy + Delta-G solvation = -3439.400693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.90780 -40.37544 -39.53336 -37.84567 -36.57221 -34.20398 -32.62128 -30.80278 -29.21644 -27.76271 -27.68960 -26.99636 -26.72890 -23.17202 -22.89777 -20.91183 -20.63573 -20.22301 -18.62263 -18.07328 -17.94576 -17.27786 -17.04807 -16.55923 -16.35233 -15.76568 -15.49806 -15.14348 -14.76434 -14.69504 -14.49958 -14.22394 -13.61453 -13.30453 -13.13827 -12.81622 -12.66929 -12.65186 -12.47863 -12.35976 -12.28416 -12.21872 -12.15177 -11.98908 -11.95898 -11.73025 -11.62691 -11.51670 -11.00902 -10.79965 -10.45960 -10.43978 -9.81441 -8.05519 -6.23800 0.61147 1.03655 1.40756 1.43169 1.53962 1.83513 2.24384 2.43984 3.15361 3.17648 3.20302 3.48756 3.53204 3.89507 3.95321 4.11878 4.31448 4.36973 4.41985 4.45090 4.52239 4.55817 4.58567 4.73714 4.85235 4.90422 4.92859 5.00658 5.02992 5.07815 5.15025 5.19228 5.29825 5.36986 5.38512 5.51940 5.59869 5.69991 5.99594 6.07280 6.28133 6.33049 6.46410 6.80692 7.07875 7.44049 8.94503 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030101 B = 0.004882 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.990389 B = 5733.731580 C = 5892.255012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.048 3.952 3 C -0.101 4.101 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.906 5.906 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.137 3.863 13 N -0.586 5.586 14 C 0.516 3.484 15 O -0.493 6.493 16 C 0.050 3.950 17 H 0.149 0.851 18 C -0.090 4.090 19 H 0.126 0.874 20 C -0.108 4.108 21 C -0.125 4.125 22 C 0.171 3.829 23 H 0.128 0.872 24 C -0.142 4.142 25 N -0.646 5.646 26 C 0.737 3.263 27 O -0.569 6.569 28 H 0.009 0.991 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.059 0.941 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.043 0.957 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 4.594 20.684 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.047 3.953 3 C -0.158 4.158 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.544 5.544 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.017 3.983 13 N -0.332 5.332 14 C 0.305 3.695 15 O -0.364 6.364 16 C -0.058 4.058 17 H 0.166 0.834 18 C -0.109 4.109 19 H 0.144 0.856 20 C -0.145 4.145 21 C -0.163 4.163 22 C 0.074 3.926 23 H 0.146 0.854 24 C -0.180 4.180 25 N -0.387 5.387 26 C 0.442 3.558 27 O -0.445 6.445 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.062 0.938 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.938 4.643 20.171 21.279 hybrid contribution 0.673 -0.658 -1.708 1.950 sum -4.265 3.985 18.463 19.364 Atomic orbital electron populations 1.21496 0.97377 0.98156 0.98674 1.18485 0.92942 0.92670 0.91218 1.21497 0.97358 0.98467 0.98517 1.21276 1.31853 1.12359 0.91038 0.92596 1.25606 0.94986 0.95571 1.01518 1.69964 1.37205 1.23650 1.23621 0.85544 0.78098 0.78700 0.79509 1.19211 1.20633 1.20816 1.21804 0.99041 0.95395 0.82096 1.47370 1.21286 1.36303 1.28204 1.21488 0.79960 0.81834 0.86247 1.90727 1.36845 1.37460 1.71357 1.23699 0.95551 0.91383 0.95206 0.83387 1.24072 0.94141 0.93994 0.98686 0.85564 1.23165 0.98029 1.00994 0.92293 1.22864 0.98591 1.02802 0.92085 1.24252 0.91625 0.84180 0.92588 0.85407 1.24776 0.96319 0.97415 0.99519 1.49166 1.31065 1.13409 1.45070 1.15166 0.83752 0.79179 0.77703 1.90889 1.16154 1.68722 1.68705 0.97186 0.92486 0.96195 0.96641 0.92201 0.97642 0.93046 0.90775 0.90290 0.87811 0.89701 0.90836 0.86326 0.93771 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.16 7.15 71.98 0.51 -4.65 16 2 C 0.05 2.48 0.57 -52.93 -0.03 2.45 16 3 C -0.10 -5.34 7.54 71.98 0.54 -4.79 16 4 C -0.53 -29.36 8.01 25.60 0.21 -29.15 16 5 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 6 C 0.02 1.25 5.15 84.66 0.44 1.69 16 7 N -0.91 -51.89 9.35 21.45 0.20 -51.69 16 8 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 C 0.14 6.28 4.78 86.38 0.41 6.69 16 13 N -0.59 -23.44 2.17 -773.14 -1.68 -25.12 16 14 C 0.52 18.16 6.48 87.23 0.57 18.72 16 15 O -0.49 -19.74 16.61 -2.89 -0.05 -19.79 16 16 C 0.05 1.21 2.80 44.25 0.12 1.33 16 17 H 0.15 2.80 7.37 -2.39 -0.02 2.78 16 18 C -0.09 -1.51 5.16 -7.00 -0.04 -1.54 16 19 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 20 C -0.11 -0.89 6.12 32.81 0.20 -0.69 16 21 C -0.13 -1.20 6.12 31.98 0.20 -1.00 16 22 C 0.17 3.07 5.81 48.02 0.28 3.35 16 23 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 24 C -0.14 -2.49 6.76 34.71 0.23 -2.26 16 25 N -0.65 -18.28 3.90 -770.22 -3.00 -21.28 16 26 C 0.74 28.60 6.56 179.50 1.18 29.77 16 27 O -0.57 -26.13 17.31 -3.81 -0.07 -26.19 16 28 H 0.01 0.46 6.06 -2.39 -0.01 0.44 16 29 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 30 H 0.02 1.01 8.13 -2.39 -0.02 1.00 16 31 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 33 H 0.00 0.24 6.34 -2.39 -0.02 0.22 16 34 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.07 3.44 7.85 -2.39 -0.02 3.42 16 36 H 0.08 3.52 8.12 -2.39 -0.02 3.50 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.08 0.59 7.75 -2.39 -0.02 0.58 16 39 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.13 1.30 8.12 -2.39 -0.02 1.29 16 Total: -1.00 -72.60 324.15 3.27 -69.33 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.02 Total: 8.60 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 4.82 Total: 19.92 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -4.48 Total: -98.09 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.11 Total: -45.98 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.60 3.27 -69.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924929211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.444 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds