Wall clock time and date at job start Tue Mar 31 2020 06:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46701 * 2 1 4 4 C 1.50699 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.38017 * 119.51539 * 125.00009 * 4 3 2 6 6 C 1.39935 * 119.13537 * 180.02562 * 5 4 3 7 7 C 1.48157 * 120.89329 * 180.02562 * 6 5 4 8 8 O 1.21516 * 119.99852 * 315.38552 * 7 6 5 9 9 N 1.34771 * 120.00310 * 135.39477 * 7 6 5 10 10 C 1.46503 * 120.00051 * 5.62712 * 9 7 6 11 11 C 1.52995 * 109.46886 * 97.42194 * 10 9 7 12 12 C 1.46496 * 120.00106 * 185.63439 * 9 7 6 13 13 C 1.50697 * 109.47232 * 89.99659 * 12 9 7 14 14 H 1.08003 * 120.00399 * 0.02562 * 13 12 9 15 15 C 1.37879 * 120.00184 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99791 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00431 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47196 * 59.99735 * 17 15 13 19 19 H 1.48496 * 109.47420 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47203 * 300.00171 * 17 15 13 21 21 C 1.39610 * 118.21266 * 359.97438 * 6 5 4 22 22 C 1.38854 * 118.95094 * 0.27915 * 21 6 5 23 23 O 1.35685 * 119.62505 * 179.70318 * 22 21 6 24 24 N 1.31887 * 119.51166 * 305.02109 * 4 3 2 25 25 H 1.08998 * 109.46964 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47301 * 299.99907 * 1 2 3 27 27 H 1.08997 * 109.47161 * 60.00576 * 1 2 3 28 28 H 1.08999 * 109.47301 * 240.00093 * 2 1 3 29 29 H 1.08993 * 109.46835 * 119.99788 * 2 1 3 30 30 H 1.08999 * 109.47168 * 60.00011 * 3 2 1 31 31 H 1.08993 * 109.47303 * 299.99501 * 3 2 1 32 32 H 1.08001 * 120.43815 * 0.02562 * 5 4 3 33 33 H 1.08993 * 109.47458 * 217.42632 * 10 9 7 34 34 H 1.09005 * 109.46741 * 337.42811 * 10 9 7 35 35 H 1.09004 * 109.47630 * 308.79618 * 11 10 9 36 36 H 1.09007 * 109.47122 * 68.79349 * 11 10 9 37 37 H 1.08997 * 109.47304 * 188.79134 * 11 10 9 38 38 H 1.09003 * 109.46933 * 209.99573 * 12 9 7 39 39 H 1.09001 * 109.47420 * 329.99707 * 12 9 7 40 40 H 0.97000 * 120.00040 * 179.97438 * 16 15 13 41 41 H 1.08004 * 120.52513 * 180.02562 * 21 6 5 42 42 H 0.96698 * 114.00493 * 89.99120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2264 2.1317 -0.9847 6 6 5.6258 2.1259 -0.9780 7 6 6.3944 2.8529 -2.0152 8 8 6.0687 2.7694 -3.1829 9 7 7.4549 3.6066 -1.6636 10 6 7.9232 3.6101 -0.2755 11 6 9.0954 2.6376 -0.1303 12 6 8.1393 4.4226 -2.6695 13 6 7.5055 5.7888 -2.7241 14 1 6.6761 6.0257 -2.0742 15 6 7.9852 6.7366 -3.6031 16 7 8.9954 6.4483 -4.3942 17 14 7.1992 8.4298 -3.6713 18 1 7.3134 9.0825 -2.3423 19 1 7.8930 9.2570 -4.6909 20 1 5.7657 8.2959 -4.0353 21 6 6.2780 1.4177 0.0330 22 6 5.5178 0.7468 0.9817 23 8 6.1376 0.0492 1.9667 24 7 4.1970 0.7838 0.9389 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.6853 2.6683 -1.7499 33 1 8.2485 4.6143 -0.0042 34 1 7.1111 3.3010 0.3827 35 1 8.8181 1.6694 -0.5472 36 1 9.9607 3.0291 -0.6653 37 1 9.3427 2.5215 0.9249 38 1 9.1917 4.5207 -2.4031 39 1 8.0546 3.9436 -3.6450 40 1 9.3326 7.1150 -5.0128 41 1 7.3569 1.3886 0.0741 42 1 6.3180 0.5680 2.7625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:36 Heat of formation + Delta-G solvation = -45.714956 kcal Electronic energy + Delta-G solvation = -23462.376477 eV Core-core repulsion = 20021.812256 eV Total energy + Delta-G solvation = -3440.564221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86017 -38.93823 -37.40029 -35.58810 -34.94429 -33.11397 -32.19254 -30.78061 -30.22512 -27.45964 -26.98710 -24.52726 -23.16099 -22.91710 -22.43947 -21.24823 -19.28028 -18.10386 -17.03113 -16.59596 -16.49778 -16.10699 -15.67714 -15.17319 -14.96878 -14.53331 -14.24318 -14.12453 -13.77806 -13.56755 -13.07878 -12.79361 -12.47616 -12.33213 -12.13768 -11.94386 -11.85459 -11.71751 -11.53532 -11.32203 -11.26077 -10.97892 -10.89732 -10.79621 -10.63829 -10.21540 -9.87841 -9.69320 -9.66705 -9.03662 -8.81231 -8.49788 -7.82674 -6.11219 -4.16890 0.90718 0.93523 3.07356 3.27539 3.32446 3.34014 3.45770 3.64656 3.80735 4.37634 4.40711 4.59775 4.87456 4.92075 4.97030 5.02983 5.10878 5.23269 5.23965 5.33105 5.45222 5.47445 5.55625 5.63315 5.66004 5.66784 5.81124 5.89342 5.92364 6.06920 6.13576 6.15400 6.20465 6.38018 6.43914 6.94881 7.33550 7.36209 7.40369 7.83803 7.84116 8.13911 8.21680 8.73817 8.90847 9.48394 10.96895 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.004225 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.098161 B = 6625.675626 C = 7770.272401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.068 4.068 4 C 0.149 3.851 5 C -0.133 4.133 6 C -0.049 4.049 7 C 0.546 3.454 8 O -0.527 6.527 9 N -0.584 5.584 10 C 0.095 3.905 11 C -0.175 4.175 12 C 0.246 3.754 13 C -0.532 4.532 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.177 4.177 22 C 0.306 3.694 23 O -0.480 6.480 24 N -0.494 5.494 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.265 0.735 41 H 0.159 0.841 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 -9.996 13.533 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.106 4.106 4 C 0.012 3.988 5 C -0.154 4.154 6 C -0.060 4.060 7 C 0.332 3.668 8 O -0.404 6.404 9 N -0.314 5.314 10 C -0.029 4.029 11 C -0.233 4.233 12 C 0.127 3.873 13 C -0.571 4.571 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.199 4.199 22 C 0.127 3.873 23 O -0.287 6.287 24 N -0.214 5.214 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.164 0.836 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.176 0.824 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.944 -10.846 13.003 19.150 hybrid contribution 0.318 1.771 -0.257 1.817 sum -8.626 -9.075 12.746 17.867 Atomic orbital electron populations 1.21782 0.95645 1.01676 1.01815 1.21443 0.95492 0.95594 1.02950 1.20612 0.87839 0.98598 1.03543 1.20884 0.96469 0.91949 0.89532 1.22086 0.93267 1.00441 0.99585 1.20600 0.94451 0.96370 0.94576 1.18072 0.81170 0.79991 0.87603 1.90779 1.68006 1.63184 1.18393 1.48211 1.29423 1.43488 1.10321 1.21705 0.96552 1.00983 0.83663 1.22340 0.99751 0.99502 1.01699 1.19358 0.91880 0.89067 0.87003 1.21376 1.17177 0.96914 1.21641 0.92434 1.24929 0.94972 0.98986 0.95062 1.69918 1.25096 1.35090 1.23033 0.86541 0.79608 0.83420 0.77771 1.20197 1.21090 1.20123 1.22868 1.03152 0.97957 0.95889 1.18940 0.86744 0.91049 0.90548 1.84803 1.77073 1.39342 1.27444 1.66710 1.09922 1.18561 1.26209 0.92714 0.92682 0.92656 0.92071 0.90872 0.89782 0.89832 0.83616 0.89797 0.91022 0.92399 0.91388 0.91720 0.94568 0.93514 0.92535 0.82413 0.74491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.14 5.79 -26.73 -0.15 -1.30 16 3 C -0.07 -0.70 5.61 -27.88 -0.16 -0.85 16 4 C 0.15 1.99 6.18 -82.65 -0.51 1.48 16 5 C -0.13 -2.02 9.40 -39.03 -0.37 -2.39 16 6 C -0.05 -0.82 5.13 -104.68 -0.54 -1.36 16 7 C 0.55 11.56 7.34 -12.19 -0.09 11.47 16 8 O -0.53 -13.31 16.56 5.35 0.09 -13.23 16 9 N -0.58 -12.16 2.46 -176.06 -0.43 -12.59 16 10 C 0.09 1.49 5.60 -4.04 -0.02 1.47 16 11 C -0.17 -2.26 9.13 37.16 0.34 -1.93 16 12 C 0.25 6.27 5.22 -5.20 -0.03 6.24 16 13 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 17 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.18 -2.52 7.45 -38.84 -0.29 -2.81 16 22 C 0.31 4.11 7.74 -17.16 -0.13 3.97 16 23 O -0.48 -5.30 13.56 -18.76 -0.25 -5.55 16 24 N -0.49 -6.89 9.87 -9.60 -0.09 -6.98 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 32 H 0.15 2.15 7.94 -52.49 -0.42 1.74 16 33 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 34 H 0.07 0.99 5.06 -51.93 -0.26 0.72 16 35 H 0.06 0.76 6.39 -51.93 -0.33 0.42 16 36 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 41 H 0.16 2.04 3.74 -52.48 -0.20 1.85 16 42 H 0.40 2.31 9.06 45.56 0.41 2.72 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -33.66 350.58 -7.04 -40.69 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.34 Total: 1.52 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.00 Total: -0.22 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.21 Total: -44.89 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.17 Total: -18.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.66 -7.04 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.021 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds