Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46701 * 2 1 4 4 C 1.50699 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.38017 * 119.51539 * 125.00009 * 4 3 2 6 6 C 1.39935 * 119.13537 * 180.02562 * 5 4 3 7 7 C 1.48157 * 120.89329 * 180.02562 * 6 5 4 8 8 O 1.21516 * 119.99852 * 315.38552 * 7 6 5 9 9 N 1.34771 * 120.00310 * 135.39477 * 7 6 5 10 10 C 1.46503 * 120.00051 * 5.62712 * 9 7 6 11 11 C 1.52995 * 109.46886 * 97.42194 * 10 9 7 12 12 C 1.46496 * 120.00106 * 185.63439 * 9 7 6 13 13 C 1.50697 * 109.47232 * 89.99659 * 12 9 7 14 14 H 1.08003 * 120.00399 * 0.02562 * 13 12 9 15 15 C 1.37879 * 120.00184 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99791 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00431 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47196 * 59.99735 * 17 15 13 19 19 H 1.48496 * 109.47420 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47203 * 300.00171 * 17 15 13 21 21 C 1.39610 * 118.21266 * 359.97438 * 6 5 4 22 22 C 1.38854 * 118.95094 * 0.27915 * 21 6 5 23 23 O 1.35685 * 119.62505 * 179.70318 * 22 21 6 24 24 N 1.31887 * 119.51166 * 305.02109 * 4 3 2 25 25 H 1.08998 * 109.46964 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47301 * 299.99907 * 1 2 3 27 27 H 1.08997 * 109.47161 * 60.00576 * 1 2 3 28 28 H 1.08999 * 109.47301 * 240.00093 * 2 1 3 29 29 H 1.08993 * 109.46835 * 119.99788 * 2 1 3 30 30 H 1.08999 * 109.47168 * 60.00011 * 3 2 1 31 31 H 1.08993 * 109.47303 * 299.99501 * 3 2 1 32 32 H 1.08001 * 120.43815 * 0.02562 * 5 4 3 33 33 H 1.08993 * 109.47458 * 217.42632 * 10 9 7 34 34 H 1.09005 * 109.46741 * 337.42811 * 10 9 7 35 35 H 1.09004 * 109.47630 * 308.79618 * 11 10 9 36 36 H 1.09007 * 109.47122 * 68.79349 * 11 10 9 37 37 H 1.08997 * 109.47304 * 188.79134 * 11 10 9 38 38 H 1.09003 * 109.46933 * 209.99573 * 12 9 7 39 39 H 1.09001 * 109.47420 * 329.99707 * 12 9 7 40 40 H 0.97000 * 120.00040 * 179.97438 * 16 15 13 41 41 H 1.08004 * 120.52513 * 180.02562 * 21 6 5 42 42 H 0.96698 * 114.00493 * 89.99120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2264 2.1317 -0.9847 6 6 5.6258 2.1259 -0.9780 7 6 6.3944 2.8529 -2.0152 8 8 6.0687 2.7694 -3.1829 9 7 7.4549 3.6066 -1.6636 10 6 7.9232 3.6101 -0.2755 11 6 9.0954 2.6376 -0.1303 12 6 8.1393 4.4226 -2.6695 13 6 7.5055 5.7888 -2.7241 14 1 6.6761 6.0257 -2.0742 15 6 7.9852 6.7366 -3.6031 16 7 8.9954 6.4483 -4.3942 17 14 7.1992 8.4298 -3.6713 18 1 7.3134 9.0825 -2.3423 19 1 7.8930 9.2570 -4.6909 20 1 5.7657 8.2959 -4.0353 21 6 6.2780 1.4177 0.0330 22 6 5.5178 0.7468 0.9817 23 8 6.1376 0.0492 1.9667 24 7 4.1970 0.7838 0.9389 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.6853 2.6683 -1.7499 33 1 8.2485 4.6143 -0.0042 34 1 7.1111 3.3010 0.3827 35 1 8.8181 1.6694 -0.5472 36 1 9.9607 3.0291 -0.6653 37 1 9.3427 2.5215 0.9249 38 1 9.1917 4.5207 -2.4031 39 1 8.0546 3.9436 -3.6450 40 1 9.3326 7.1150 -5.0128 41 1 7.3569 1.3886 0.0741 42 1 6.3180 0.5680 2.7625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = -70.369884 kcal Electronic energy + Delta-G solvation = -23463.445595 eV Core-core repulsion = 20021.812256 eV Total energy + Delta-G solvation = -3441.633339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07041 -40.45132 -38.34388 -37.23505 -35.88698 -34.98436 -33.55776 -31.98498 -31.44942 -29.37100 -27.87412 -26.13641 -24.67241 -23.97388 -23.79078 -22.21648 -20.51485 -19.39279 -18.64083 -18.25507 -17.86787 -17.40827 -17.00424 -16.61227 -16.06077 -16.00130 -15.62978 -15.43044 -14.76778 -14.68902 -14.51618 -14.29537 -13.68211 -13.66831 -13.34803 -13.22707 -13.15107 -12.95796 -12.70841 -12.67720 -12.54411 -12.39090 -12.21219 -12.10176 -11.97698 -11.78677 -11.56149 -11.28352 -10.87913 -10.66227 -10.40322 -9.87431 -9.60207 -8.25688 -6.41017 -0.32152 -0.13932 1.36422 1.40467 1.47633 1.61665 2.05439 2.37864 2.49560 2.56722 3.04410 3.25837 3.45370 3.83122 3.83966 4.00562 4.08414 4.17582 4.21221 4.30982 4.40709 4.45983 4.56457 4.68516 4.82336 4.83748 4.87710 4.88697 4.97244 5.00721 5.02584 5.17019 5.20624 5.33391 5.34971 5.42764 5.49259 5.50137 5.74976 6.00305 6.52976 6.58413 6.67223 6.81312 7.11254 7.31613 8.81766 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.004225 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.098161 B = 6625.675626 C = 7770.272401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.068 4.068 4 C 0.159 3.841 5 C -0.146 4.146 6 C -0.064 4.064 7 C 0.541 3.459 8 O -0.583 6.583 9 N -0.587 5.587 10 C 0.089 3.911 11 C -0.168 4.168 12 C 0.261 3.739 13 C -0.549 4.549 14 H 0.055 0.945 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.968 3.032 18 H -0.260 1.260 19 H -0.278 1.278 20 H -0.276 1.276 21 C -0.173 4.173 22 C 0.319 3.681 23 O -0.480 6.480 24 N -0.499 5.499 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.108 0.892 38 H 0.031 0.969 39 H 0.001 0.999 40 H 0.269 0.731 41 H 0.171 0.829 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.630 -10.056 16.280 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.106 4.106 4 C 0.021 3.979 5 C -0.167 4.167 6 C -0.075 4.075 7 C 0.329 3.671 8 O -0.464 6.464 9 N -0.317 5.317 10 C -0.033 4.033 11 C -0.225 4.225 12 C 0.140 3.860 13 C -0.588 4.588 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.194 4.194 22 C 0.140 3.860 23 O -0.290 6.290 24 N -0.219 5.219 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.159 0.841 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.049 0.951 39 H 0.019 0.981 40 H 0.077 0.923 41 H 0.188 0.812 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -10.048 -10.911 15.832 21.695 hybrid contribution 0.690 1.699 -1.037 2.106 sum -9.358 -9.212 14.795 19.782 Atomic orbital electron populations 1.21753 0.93992 1.02285 1.02508 1.21398 0.96893 0.94881 1.01945 1.20749 0.85647 0.99292 1.04886 1.21260 0.97835 0.90511 0.88296 1.22159 0.92738 1.01359 1.00413 1.20220 0.94774 0.97805 0.94666 1.18740 0.80886 0.79598 0.87912 1.90731 1.69407 1.65264 1.21008 1.48212 1.29253 1.42572 1.11618 1.22039 0.98458 1.01836 0.80951 1.22294 0.97641 0.98280 1.04324 1.18821 0.91958 0.88729 0.86451 1.21657 1.17249 0.97966 1.21917 0.92696 1.25850 0.95389 1.03182 0.94458 1.70039 1.26350 1.36543 1.23615 0.85461 0.78284 0.78437 0.78621 1.18403 1.20304 1.20191 1.22892 1.03753 0.97644 0.95157 1.18966 0.86567 0.89851 0.90648 1.84760 1.76629 1.39505 1.28107 1.66869 1.10202 1.18599 1.26225 0.92202 0.91749 0.92202 0.93219 0.91724 0.88130 0.88762 0.84065 0.90291 0.88471 0.92435 0.93002 0.87382 0.95134 0.98095 0.92260 0.81178 0.71466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.11 -2.01 5.79 30.60 0.18 -1.83 16 3 C -0.07 -1.26 5.61 29.85 0.17 -1.09 16 4 C 0.16 3.98 6.18 42.50 0.26 4.25 16 5 C -0.15 -4.41 9.40 22.63 0.21 -4.20 16 6 C -0.06 -2.14 5.13 -19.90 -0.10 -2.24 16 7 C 0.54 23.79 7.34 86.88 0.64 24.43 16 8 O -0.58 -31.34 16.56 -3.77 -0.06 -31.41 16 9 N -0.59 -25.23 2.46 -829.24 -2.04 -27.27 16 10 C 0.09 2.73 5.60 86.38 0.48 3.21 16 11 C -0.17 -4.07 9.13 71.98 0.66 -3.41 16 12 C 0.26 14.02 5.22 85.63 0.45 14.47 16 13 C -0.55 -31.37 9.39 25.60 0.24 -31.13 16 14 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 15 C 0.01 0.61 5.46 84.66 0.46 1.07 16 16 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 17 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.17 -4.61 7.45 22.75 0.17 -4.44 16 22 C 0.32 7.69 7.74 84.78 0.66 8.35 16 23 O -0.48 -8.81 13.56 -90.03 -1.22 -10.03 16 24 N -0.50 -12.71 9.87 -297.16 -2.93 -15.65 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.26 7.94 -2.39 -0.02 1.24 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.55 7.86 -2.39 -0.02 1.53 16 32 H 0.14 4.30 7.94 -2.91 -0.02 4.27 16 33 H 0.08 2.50 8.12 -2.39 -0.02 2.48 16 34 H 0.10 2.49 5.06 -2.38 -0.01 2.48 16 35 H 0.06 1.41 6.39 -2.39 -0.02 1.40 16 36 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 39 H 0.00 0.06 7.35 -2.39 -0.02 0.04 16 40 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.17 4.01 3.74 -2.91 -0.01 4.00 16 42 H 0.42 3.08 9.06 -74.06 -0.67 2.41 16 Total: -1.00 -75.92 350.58 1.61 -74.32 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.37 Total: 12.85 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.18 Total: 6.16 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -4.69 Total: -98.09 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.28 Total: -41.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.92 1.61 -74.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.949 kcal (2) G-P(sol) polarization free energy of solvation -75.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds