Wall clock time and date at job start Tue Mar 31 2020 07:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47069 * 2 1 4 4 C 1.53002 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46817 * 55.69338 * 4 3 2 6 6 O 1.42896 * 109.47657 * 295.69670 * 4 3 2 7 7 C 1.50700 * 109.47543 * 175.68941 * 4 3 2 8 8 O 1.21286 * 119.99807 * 105.28975 * 7 4 3 9 9 N 1.34773 * 120.00190 * 285.30160 * 7 4 3 10 10 C 1.46502 * 120.00074 * 5.09252 * 9 7 4 11 11 C 1.50697 * 109.47284 * 266.74489 * 10 9 7 12 12 H 1.07997 * 120.00197 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99692 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00591 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99878 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47144 * 59.99672 * 15 13 11 17 17 H 1.48503 * 109.47286 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47056 * 299.99864 * 15 13 11 19 19 C 1.46504 * 119.99864 * 185.10105 * 9 7 4 20 20 C 1.50702 * 109.47041 * 269.99595 * 19 9 7 21 21 C 1.38664 * 120.41820 * 90.00147 * 20 19 9 22 22 C 1.38633 * 118.42208 * 179.97438 * 21 20 19 23 23 C 1.38226 * 119.15675 * 0.24623 * 22 21 20 24 24 N 1.31856 * 120.76589 * 359.50763 * 23 22 21 25 25 C 1.31889 * 121.72330 * 0.48593 * 24 23 22 26 26 H 1.08989 * 109.47093 * 299.99864 * 1 2 3 27 27 H 1.09001 * 109.46927 * 60.00327 * 1 2 3 28 28 H 1.08998 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47195 * 239.99874 * 2 1 3 30 30 H 1.09002 * 109.47268 * 120.00374 * 2 1 3 31 31 H 1.08998 * 109.47097 * 60.00371 * 3 2 1 32 32 H 1.08999 * 109.47711 * 299.99615 * 3 2 1 33 33 H 0.96709 * 113.99582 * 299.99686 * 6 4 3 34 34 H 1.08995 * 109.46998 * 26.74703 * 10 9 7 35 35 H 1.09003 * 109.46776 * 146.73996 * 10 9 7 36 36 H 0.96998 * 120.00262 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47149 * 149.99603 * 19 9 7 38 38 H 1.09000 * 109.47370 * 29.99307 * 19 9 7 39 39 H 1.08001 * 120.79130 * 359.95509 * 21 20 19 40 40 H 1.07999 * 120.42010 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.61760 * 179.74888 * 23 22 21 42 42 H 1.08002 * 119.61544 * 179.75713 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8631 -0.8481 6 8 4.0459 0.8585 1.2149 7 6 4.0725 2.8592 -0.1061 8 8 4.5353 3.4135 0.8683 9 7 4.0072 3.5104 -1.2843 10 6 3.3475 2.8833 -2.4323 11 6 4.3707 2.1506 -3.2612 12 1 5.4087 2.1521 -2.9630 13 6 3.9819 1.4791 -4.4008 14 7 2.7179 1.4775 -4.7643 15 14 5.2503 0.5713 -5.4287 16 1 5.9018 -0.4750 -4.6004 17 1 4.5815 -0.0644 -6.5923 18 1 6.2760 1.5312 -5.9103 19 6 4.5962 4.8452 -1.4171 20 6 3.5632 5.8867 -1.0717 21 6 3.4263 6.3338 0.2337 22 6 2.4631 7.2933 0.5050 23 6 1.6733 7.7651 -0.5267 24 7 1.8347 7.3203 -1.7574 25 6 2.7410 6.4085 -2.0520 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7603 1.3235 2.0133 34 1 2.5946 2.1791 -2.0786 35 1 2.8694 3.6512 -3.0406 36 1 2.4444 1.0047 -5.5658 37 1 4.9327 4.9935 -2.4433 38 1 5.4451 4.9369 -0.7396 39 1 4.0549 5.9437 1.0205 40 1 2.3285 7.6641 1.5103 41 1 0.9179 8.5096 -0.3230 42 1 2.8413 6.0655 -3.0712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930901984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:26 Heat of formation + Delta-G solvation = -65.519407 kcal Electronic energy + Delta-G solvation = -24210.554551 eV Core-core repulsion = 20769.131545 eV Total energy + Delta-G solvation = -3441.423006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.17903 -39.36574 -36.59816 -35.39265 -33.77640 -33.08485 -32.17390 -31.40401 -29.09043 -27.55649 -26.10810 -24.06327 -23.41062 -22.78179 -21.75118 -20.93719 -18.91806 -17.06592 -16.96650 -16.53090 -16.33761 -15.95246 -15.32250 -15.14493 -14.95304 -14.51661 -13.96424 -13.77171 -13.44086 -13.21386 -13.13909 -12.87193 -12.72628 -12.46275 -11.95473 -11.81834 -11.66577 -11.46271 -11.30708 -11.14590 -11.04834 -10.86027 -10.77115 -10.32750 -10.21807 -10.12785 -9.81223 -9.60319 -9.25798 -9.04606 -8.71603 -8.55417 -7.89818 -6.25757 -4.34155 1.27783 1.50349 3.15291 3.21013 3.26547 3.30010 3.70040 4.15507 4.28075 4.64414 4.73651 4.98978 5.06149 5.07973 5.13368 5.23180 5.27217 5.28638 5.31103 5.47710 5.63045 5.69658 5.83166 5.86505 6.02095 6.05619 6.11715 6.14693 6.24650 6.30445 6.33475 6.52564 6.56401 6.58459 6.66827 6.91394 7.11181 7.35927 7.67321 7.88663 7.94664 8.16068 8.17841 8.66927 8.82787 9.34393 10.80520 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.006494 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.939229 B = 4310.608726 C = 5559.171287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.094 3.906 5 H 0.138 0.862 6 O -0.544 6.544 7 C 0.492 3.508 8 O -0.571 6.571 9 N -0.585 5.585 10 C 0.224 3.776 11 C -0.546 4.546 12 H 0.062 0.938 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.160 3.840 20 C -0.145 4.145 21 C -0.055 4.055 22 C -0.182 4.182 23 C 0.089 3.911 24 N -0.489 5.489 25 C 0.115 3.885 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.373 0.627 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.150 0.850 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 4.786 8.331 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.186 4.186 4 C 0.032 3.968 5 H 0.155 0.845 6 O -0.348 6.348 7 C 0.280 3.720 8 O -0.452 6.452 9 N -0.316 5.316 10 C 0.105 3.895 11 C -0.584 4.584 12 H 0.080 0.920 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.036 3.964 20 C -0.148 4.148 21 C -0.082 4.082 22 C -0.202 4.202 23 C -0.068 4.068 24 N -0.198 5.198 25 C -0.043 4.043 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.220 0.780 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.940 4.889 7.574 9.483 hybrid contribution 0.840 -0.395 0.244 0.959 sum -2.100 4.494 7.818 9.259 Atomic orbital electron populations 1.21761 0.96172 1.01249 1.01603 1.21413 0.95311 0.96020 1.02682 1.22366 0.94271 0.98604 1.03383 1.21953 0.93898 0.91591 0.89325 0.84478 1.86576 1.77579 1.55296 1.15341 1.21466 0.78669 0.89061 0.82841 1.90562 1.48400 1.68991 1.37239 1.48286 1.55712 1.15318 1.12245 1.19784 0.93316 0.93891 0.82496 1.21430 0.94855 1.33117 1.08994 0.91990 1.24917 0.95422 0.96023 0.97133 1.69899 1.15181 1.42186 1.25177 0.86584 0.81360 0.80074 0.79673 1.19989 1.21104 1.20092 1.20160 0.93009 0.80385 1.02884 1.21421 1.00072 0.98829 0.94478 1.21669 0.96244 0.93690 0.96575 1.22106 0.98009 0.99433 1.00647 1.22697 0.97647 0.98074 0.88365 1.67710 1.18984 1.11502 1.21583 1.22816 0.89972 0.91511 0.99964 0.93320 0.92470 0.92990 0.91223 0.91787 0.92216 0.89031 0.77956 0.92954 0.94518 0.92323 0.88898 0.89985 0.84455 0.85293 0.83303 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.72 5.83 -26.73 -0.16 -1.87 16 3 C -0.15 -2.39 4.54 -26.73 -0.12 -2.51 16 4 C 0.09 1.71 2.57 -27.88 -0.07 1.64 16 5 H 0.14 2.78 7.30 -51.92 -0.38 2.40 16 6 O -0.54 -9.39 12.58 -54.70 -0.69 -10.07 16 7 C 0.49 9.67 6.99 -10.99 -0.08 9.60 16 8 O -0.57 -11.80 15.24 -13.91 -0.21 -12.01 16 9 N -0.59 -11.47 2.44 -176.43 -0.43 -11.90 16 10 C 0.22 4.93 4.71 -5.19 -0.02 4.91 16 11 C -0.55 -13.34 8.97 -34.44 -0.31 -13.65 16 12 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -23.22 13.29 55.43 0.74 -22.48 16 15 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 C 0.16 2.78 5.54 -5.19 -0.03 2.75 16 20 C -0.14 -2.36 5.48 -104.49 -0.57 -2.93 16 21 C -0.06 -0.83 9.74 -39.28 -0.38 -1.22 16 22 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 23 C 0.09 1.21 11.18 -17.55 -0.20 1.02 16 24 N -0.49 -7.93 10.36 -13.25 -0.14 -8.07 16 25 C 0.11 1.88 10.86 -17.55 -0.19 1.69 16 26 H 0.05 0.58 8.14 -51.94 -0.42 0.15 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.90 7.80 -51.93 -0.41 0.49 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.63 5.50 -51.93 -0.29 1.35 16 33 H 0.37 5.40 8.69 45.56 0.40 5.80 16 34 H 0.05 1.18 4.14 -51.93 -0.22 0.96 16 35 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.09 1.57 8.02 -51.93 -0.42 1.16 16 38 H 0.08 1.42 7.45 -51.93 -0.39 1.03 16 39 H 0.14 2.10 7.48 -52.49 -0.39 1.71 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.16 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 352.15 15.07 5.31 5.31 Total: -1.00 -28.04 352.15 -8.14 -36.18 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.43 Total: 11.50 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.26 Total: -3.30 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.17 Total: -42.45 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.90 Total: -22.08 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.04 -8.14 -36.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930901984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.342 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds