Wall clock time and date at job start Tue Mar 31 2020 07:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47069 * 2 1 4 4 C 1.53002 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46817 * 55.69338 * 4 3 2 6 6 O 1.42896 * 109.47657 * 295.69670 * 4 3 2 7 7 C 1.50700 * 109.47543 * 175.68941 * 4 3 2 8 8 O 1.21286 * 119.99807 * 105.28975 * 7 4 3 9 9 N 1.34773 * 120.00190 * 285.30160 * 7 4 3 10 10 C 1.46502 * 120.00074 * 5.09252 * 9 7 4 11 11 C 1.50697 * 109.47284 * 266.74489 * 10 9 7 12 12 H 1.07997 * 120.00197 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99692 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00591 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99878 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47144 * 59.99672 * 15 13 11 17 17 H 1.48503 * 109.47286 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47056 * 299.99864 * 15 13 11 19 19 C 1.46504 * 119.99864 * 185.10105 * 9 7 4 20 20 C 1.50702 * 109.47041 * 269.99595 * 19 9 7 21 21 C 1.38664 * 120.41820 * 90.00147 * 20 19 9 22 22 C 1.38633 * 118.42208 * 179.97438 * 21 20 19 23 23 C 1.38226 * 119.15675 * 0.24623 * 22 21 20 24 24 N 1.31856 * 120.76589 * 359.50763 * 23 22 21 25 25 C 1.31889 * 121.72330 * 0.48593 * 24 23 22 26 26 H 1.08989 * 109.47093 * 299.99864 * 1 2 3 27 27 H 1.09001 * 109.46927 * 60.00327 * 1 2 3 28 28 H 1.08998 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47195 * 239.99874 * 2 1 3 30 30 H 1.09002 * 109.47268 * 120.00374 * 2 1 3 31 31 H 1.08998 * 109.47097 * 60.00371 * 3 2 1 32 32 H 1.08999 * 109.47711 * 299.99615 * 3 2 1 33 33 H 0.96709 * 113.99582 * 299.99686 * 6 4 3 34 34 H 1.08995 * 109.46998 * 26.74703 * 10 9 7 35 35 H 1.09003 * 109.46776 * 146.73996 * 10 9 7 36 36 H 0.96998 * 120.00262 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47149 * 149.99603 * 19 9 7 38 38 H 1.09000 * 109.47370 * 29.99307 * 19 9 7 39 39 H 1.08001 * 120.79130 * 359.95509 * 21 20 19 40 40 H 1.07999 * 120.42010 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.61760 * 179.74888 * 23 22 21 42 42 H 1.08002 * 119.61544 * 179.75713 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8631 -0.8481 6 8 4.0459 0.8585 1.2149 7 6 4.0725 2.8592 -0.1061 8 8 4.5353 3.4135 0.8683 9 7 4.0072 3.5104 -1.2843 10 6 3.3475 2.8833 -2.4323 11 6 4.3707 2.1506 -3.2612 12 1 5.4087 2.1521 -2.9630 13 6 3.9819 1.4791 -4.4008 14 7 2.7179 1.4775 -4.7643 15 14 5.2503 0.5713 -5.4287 16 1 5.9018 -0.4750 -4.6004 17 1 4.5815 -0.0644 -6.5923 18 1 6.2760 1.5312 -5.9103 19 6 4.5962 4.8452 -1.4171 20 6 3.5632 5.8867 -1.0717 21 6 3.4263 6.3338 0.2337 22 6 2.4631 7.2933 0.5050 23 6 1.6733 7.7651 -0.5267 24 7 1.8347 7.3203 -1.7574 25 6 2.7410 6.4085 -2.0520 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7603 1.3235 2.0133 34 1 2.5946 2.1791 -2.0786 35 1 2.8694 3.6512 -3.0406 36 1 2.4444 1.0047 -5.5658 37 1 4.9327 4.9935 -2.4433 38 1 5.4451 4.9369 -0.7396 39 1 4.0549 5.9437 1.0205 40 1 2.3285 7.6641 1.5103 41 1 0.9179 8.5096 -0.3230 42 1 2.8413 6.0655 -3.0712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930901984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:24 Heat of formation + Delta-G solvation = -81.574017 kcal Electronic energy + Delta-G solvation = -24211.250731 eV Core-core repulsion = 20769.131545 eV Total energy + Delta-G solvation = -3442.119186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54322 -40.72489 -38.01670 -36.99583 -35.04640 -34.80431 -33.59219 -32.62927 -30.39180 -29.33282 -27.47977 -25.56708 -24.74251 -24.26703 -23.01072 -22.21103 -20.43234 -18.72441 -18.47681 -17.96088 -17.83536 -17.18026 -16.77961 -16.56044 -16.36156 -16.12587 -15.35680 -15.06313 -14.82975 -14.51073 -14.39457 -14.26898 -14.11848 -13.90464 -13.60829 -13.24813 -13.04166 -12.87605 -12.74057 -12.64605 -12.60249 -12.37493 -12.16689 -11.95719 -11.78740 -11.57528 -11.39348 -10.82803 -10.60821 -10.46649 -10.38175 -9.94037 -9.53177 -8.19726 -6.33668 0.11424 0.32734 1.43141 1.44741 1.50925 1.59821 2.21895 2.43091 2.93118 3.10640 3.35806 3.53147 3.57306 3.85274 3.89335 3.95356 4.01434 4.08855 4.09807 4.25423 4.44058 4.46923 4.62584 4.66365 4.71456 4.74561 4.84182 4.86649 4.94995 4.99745 5.16841 5.19377 5.29562 5.34577 5.37189 5.47342 5.64274 5.75918 5.77199 6.04839 6.46631 6.65301 6.79135 7.00537 7.19060 7.38666 8.85210 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.006494 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.939229 B = 4310.608726 C = 5559.171287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.138 4.138 4 C 0.101 3.899 5 H 0.113 0.887 6 O -0.547 6.547 7 C 0.488 3.512 8 O -0.580 6.580 9 N -0.586 5.586 10 C 0.240 3.760 11 C -0.551 4.551 12 H 0.053 0.947 13 C 0.029 3.971 14 N -0.913 5.913 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.273 1.273 19 C 0.160 3.840 20 C -0.155 4.155 21 C -0.063 4.063 22 C -0.169 4.169 23 C 0.090 3.910 24 N -0.511 5.511 25 C 0.101 3.899 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.387 0.613 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.268 0.732 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 5.266 9.815 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.176 4.176 4 C 0.039 3.961 5 H 0.131 0.869 6 O -0.353 6.353 7 C 0.276 3.724 8 O -0.462 6.462 9 N -0.316 5.316 10 C 0.120 3.880 11 C -0.590 4.590 12 H 0.071 0.929 13 C -0.172 4.172 14 N -0.551 5.551 15 Si 0.775 3.225 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.198 1.198 19 C 0.036 3.964 20 C -0.158 4.158 21 C -0.090 4.090 22 C -0.188 4.188 23 C -0.067 4.067 24 N -0.219 5.219 25 C -0.056 4.056 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.153 0.847 40 H 0.184 0.816 41 H 0.203 0.797 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.496 5.380 9.067 11.108 hybrid contribution 1.012 -0.471 -0.129 1.124 sum -2.484 4.909 8.938 10.496 Atomic orbital electron populations 1.21732 0.94587 1.02321 1.01762 1.21387 0.96670 0.94771 1.02261 1.22263 0.92645 0.99621 1.03086 1.21764 0.95099 0.90132 0.89092 0.86909 1.86544 1.77764 1.55418 1.15597 1.21749 0.78438 0.89611 0.82582 1.90544 1.48905 1.69464 1.37326 1.48238 1.55583 1.16158 1.11627 1.19442 0.92741 0.93112 0.82739 1.21625 0.94849 1.33128 1.09374 0.92873 1.25536 0.96844 0.96742 0.98113 1.69982 1.16477 1.43035 1.25635 0.85742 0.79415 0.79000 0.78353 1.19879 1.20762 1.19811 1.20197 0.93485 0.79891 1.02784 1.21238 1.00184 0.99088 0.95303 1.21759 0.97014 0.94439 0.95763 1.22468 0.96248 0.97801 1.02290 1.23347 0.97972 0.97983 0.87435 1.67720 1.19119 1.11777 1.23334 1.22708 0.90740 0.92357 0.99780 0.91779 0.93662 0.91513 0.93156 0.90648 0.90565 0.91020 0.76354 0.93225 0.96108 0.92306 0.89210 0.89947 0.84688 0.81590 0.79691 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.91 71.98 0.71 -2.87 16 2 C -0.11 -3.24 5.83 30.59 0.18 -3.07 16 3 C -0.14 -4.40 4.54 30.59 0.14 -4.26 16 4 C 0.10 3.68 2.57 29.85 0.08 3.76 16 5 H 0.11 4.69 7.30 -2.38 -0.02 4.67 16 6 O -0.55 -18.34 12.58 -130.37 -1.64 -19.98 16 7 C 0.49 19.22 6.99 87.66 0.61 19.83 16 8 O -0.58 -23.65 15.24 15.57 0.24 -23.41 16 9 N -0.59 -23.44 2.44 -830.49 -2.03 -25.47 16 10 C 0.24 10.87 4.71 85.63 0.40 11.28 16 11 C -0.55 -27.56 8.97 25.60 0.23 -27.33 16 12 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 13 C 0.03 1.47 5.46 84.65 0.46 1.94 16 14 N -0.91 -48.53 13.29 21.45 0.28 -48.24 16 15 Si 0.95 40.96 29.54 68.60 2.03 42.99 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C 0.16 5.70 5.54 85.63 0.47 6.17 16 20 C -0.15 -5.06 5.48 -19.78 -0.11 -5.17 16 21 C -0.06 -1.82 9.74 22.47 0.22 -1.61 16 22 C -0.17 -3.90 10.11 22.36 0.23 -3.67 16 23 C 0.09 2.20 11.18 84.69 0.95 3.14 16 24 N -0.51 -16.09 10.36 -195.84 -2.03 -18.12 16 25 C 0.10 3.36 10.86 84.67 0.92 4.28 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.99 7.80 -2.39 -0.02 1.97 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 2.59 5.50 -2.39 -0.01 2.58 16 33 H 0.39 10.55 8.69 -74.05 -0.64 9.91 16 34 H 0.05 2.31 4.14 -2.39 -0.01 2.30 16 35 H 0.02 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.27 13.65 8.31 -92.71 -0.77 12.87 16 37 H 0.09 3.18 8.02 -2.38 -0.02 3.16 16 38 H 0.08 2.89 7.45 -2.39 -0.02 2.87 16 39 H 0.14 3.96 7.48 -2.91 -0.02 3.93 16 40 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.15 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -59.42 352.15 2.73 -56.69 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.38 Total: 33.11 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 5.49 Total: 2.42 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -3.77 Total: -91.83 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.40 Total: -43.39 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -59.42 2.73 -56.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930901984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.881 kcal (2) G-P(sol) polarization free energy of solvation -59.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds