Wall clock time and date at job start Tue Mar 31 2020 07:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53009 * 109.46683 * 2 1 4 4 C 1.53001 * 109.47445 * 119.99476 * 2 1 3 5 5 C 1.53005 * 109.47095 * 175.00331 * 4 2 1 6 6 N 1.46493 * 109.47143 * 180.02562 * 5 4 2 7 7 C 1.46502 * 120.00163 * 277.12453 * 6 5 4 8 8 C 1.50702 * 109.47113 * 274.88112 * 7 6 5 9 9 H 1.07998 * 119.99451 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00036 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00313 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99702 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47090 * 60.00752 * 12 10 8 14 14 H 1.48504 * 109.46972 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47425 * 300.00073 * 12 10 8 16 16 C 1.34772 * 120.00310 * 97.11857 * 6 5 4 17 17 O 1.21502 * 120.00151 * 184.26412 * 16 6 5 18 18 C 1.48184 * 119.99686 * 4.27000 * 16 6 5 19 19 C 1.36020 * 119.76723 * 152.48582 * 18 16 6 20 20 C 1.41983 * 119.03341 * 180.02562 * 19 18 16 21 21 O 1.22183 * 120.69228 * 180.02562 * 20 19 18 22 22 C 1.41277 * 118.61591 * 359.97438 * 20 19 18 23 23 C 1.35368 * 119.44745 * 0.02562 * 22 20 19 24 24 N 1.34762 * 120.94989 * 359.97438 * 23 22 20 25 25 H 0.97002 * 119.25067 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.47403 * 299.99870 * 1 2 3 27 27 H 1.09003 * 109.47415 * 60.00635 * 1 2 3 28 28 H 1.09008 * 109.46549 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47403 * 240.00130 * 2 1 3 30 30 H 1.09002 * 109.46845 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46677 * 299.99817 * 3 2 1 32 32 H 1.09001 * 109.47095 * 59.99941 * 3 2 1 33 33 H 1.09001 * 109.46936 * 55.00664 * 4 2 1 34 34 H 1.09001 * 109.47334 * 295.00557 * 4 2 1 35 35 H 1.09001 * 109.46957 * 60.00346 * 5 4 2 36 36 H 1.09001 * 109.47215 * 300.00300 * 5 4 2 37 37 H 1.09004 * 109.46969 * 34.87327 * 7 6 5 38 38 H 1.08997 * 109.47827 * 154.87574 * 7 6 5 39 39 H 0.96992 * 120.00032 * 179.97438 * 11 10 8 40 40 H 1.07995 * 120.48132 * 0.03951 * 19 18 16 41 41 H 1.08002 * 120.27112 * 179.72771 * 22 20 19 42 42 H 1.08000 * 119.52413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8308 1.1880 6 7 4.0532 -1.5218 2.3838 7 6 4.2530 -0.7774 3.6297 8 6 5.6183 -0.1394 3.6203 9 1 6.2719 -0.2753 2.7713 10 6 6.0329 0.6176 4.6955 11 7 5.2372 0.7826 5.7295 12 14 7.7255 1.4079 4.6840 13 1 7.8305 2.3363 3.5298 14 1 7.9280 2.1625 5.9468 15 1 8.7637 0.3526 4.5666 16 6 4.3186 -2.8423 2.3380 17 8 4.6492 -3.4310 3.3482 18 6 4.2074 -3.5762 1.0555 19 6 4.9637 -4.6871 0.8453 20 6 4.8451 -5.3780 -0.3894 21 8 5.5096 -6.3793 -0.6101 22 6 3.9421 -4.8841 -1.3571 23 6 3.2181 -3.7729 -1.0859 24 7 3.3465 -3.1326 0.0929 25 1 2.8152 -2.3387 0.2614 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4427 -0.0005 31 1 1.6764 1.9564 -0.8900 32 1 1.6764 1.9564 0.8900 33 1 1.6055 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1678 1.1420 36 1 3.8533 -1.3937 0.3003 37 1 3.4908 -0.0031 3.7165 38 1 4.1764 -1.4592 4.4767 39 1 5.5290 1.3149 6.4860 40 1 5.6443 -5.0386 1.6066 41 1 3.8339 -5.3862 -2.3072 42 1 2.5277 -3.3940 -1.8250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931940615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:19 Heat of formation + Delta-G solvation = -22.195954 kcal Electronic energy + Delta-G solvation = -24048.385523 eV Core-core repulsion = 20608.841162 eV Total energy + Delta-G solvation = -3439.544360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51834 -39.06863 -37.70119 -37.07517 -34.94129 -32.91452 -31.80510 -31.30476 -29.42104 -27.59811 -27.33120 -24.67374 -23.79429 -23.33130 -22.49196 -20.31633 -20.19837 -18.25001 -17.45832 -16.86450 -16.64946 -15.80377 -15.60786 -15.27165 -14.95209 -14.63289 -14.43611 -14.34048 -13.98348 -13.74592 -13.33215 -13.05390 -12.84262 -12.57885 -12.44887 -12.37471 -12.34844 -12.02545 -11.52412 -11.41052 -11.11705 -11.07450 -10.91117 -10.76461 -10.71882 -10.32076 -9.89490 -9.74613 -9.66115 -9.19319 -8.58222 -8.13810 -7.96567 -6.20233 -4.26697 0.94796 1.26735 2.66592 3.10404 3.23133 3.28693 3.32231 3.40418 3.90129 4.24777 4.32822 4.48602 4.51590 4.63053 4.75851 4.87589 4.94873 5.11933 5.13428 5.15512 5.33519 5.36964 5.42696 5.47225 5.64292 5.69315 5.72879 5.80669 5.86501 5.97083 6.09173 6.18738 6.20994 6.47933 6.57455 6.78086 6.83489 7.10780 7.23272 7.73564 7.93865 8.01615 8.18153 8.45693 8.77460 9.39498 10.87820 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.005902 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.807231 B = 4743.133097 C = 6549.816736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.153 4.153 4 C -0.153 4.153 5 C 0.070 3.930 6 N -0.584 5.584 7 C 0.244 3.756 8 C -0.538 4.538 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.543 3.457 17 O -0.504 6.504 18 C 0.123 3.877 19 C -0.216 4.216 20 C 0.391 3.609 21 O -0.528 6.528 22 C -0.298 4.298 23 C 0.139 3.861 24 N -0.590 5.590 25 H 0.429 0.571 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.266 0.734 40 H 0.157 0.843 41 H 0.147 0.853 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 0.795 -14.721 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.210 4.210 4 C -0.191 4.191 5 C -0.055 4.055 6 N -0.315 5.315 7 C 0.126 3.874 8 C -0.576 4.576 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.726 3.274 13 H -0.202 1.202 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.326 3.674 17 O -0.379 6.379 18 C 0.013 3.987 19 C -0.241 4.241 20 C 0.284 3.716 21 O -0.415 6.415 22 C -0.324 4.324 23 C 0.009 3.991 24 N -0.211 5.211 25 H 0.278 0.722 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.175 0.825 41 H 0.165 0.835 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.768 0.109 -14.006 17.668 hybrid contribution 0.622 0.972 0.059 1.156 sum -10.146 1.081 -13.947 17.281 Atomic orbital electron populations 1.21856 0.94766 1.01756 1.02224 1.21125 0.96149 0.97255 0.97004 1.21922 1.01797 0.95190 1.02086 1.22358 0.95595 1.00837 1.00347 1.22281 0.93735 1.01058 0.88409 1.48300 1.62291 1.06982 1.13889 1.19459 0.97045 0.91258 0.79619 1.21334 1.00689 1.31636 1.03959 0.92282 1.24913 0.97660 0.96144 0.95022 1.69906 1.36480 1.39592 1.06887 0.86538 0.84098 0.79347 0.77378 1.20163 1.21039 1.20007 1.18009 0.80005 0.82683 0.86672 1.90830 1.46441 1.67225 1.33364 1.20789 0.92624 0.95887 0.89421 1.22912 1.03473 0.96003 1.01740 1.17273 0.82594 0.85207 0.86543 1.90776 1.44663 1.25177 1.80884 1.22396 1.05108 1.00663 1.04189 1.21797 0.97124 0.92894 0.87249 1.42792 1.36931 1.28253 1.13142 0.72155 0.92201 0.92471 0.92785 0.91565 0.91865 0.92723 0.92013 0.92067 0.89074 0.87990 0.90173 0.94421 0.92978 0.92418 0.82532 0.83539 0.81631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.15 0.34 -0.68 16 2 C -0.10 -0.74 2.87 -90.62 -0.26 -1.00 16 3 C -0.15 -1.30 8.95 37.16 0.33 -0.97 16 4 C -0.15 -1.59 4.07 -26.73 -0.11 -1.70 16 5 C 0.07 0.93 4.64 -4.04 -0.02 0.91 16 6 N -0.58 -10.96 2.46 -176.05 -0.43 -11.39 16 7 C 0.24 5.80 5.26 -5.19 -0.03 5.77 16 8 C -0.54 -14.16 9.38 -34.44 -0.32 -14.48 16 9 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 12 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.54 10.65 7.54 -12.18 -0.09 10.56 16 17 O -0.50 -12.04 16.08 5.36 0.09 -11.96 16 18 C 0.12 1.94 6.27 -82.48 -0.52 1.42 16 19 C -0.22 -3.70 9.54 -38.94 -0.37 -4.07 16 20 C 0.39 6.62 6.78 -36.99 -0.25 6.37 16 21 O -0.53 -10.85 17.89 4.75 0.09 -10.77 16 22 C -0.30 -3.62 10.00 -39.45 -0.39 -4.01 16 23 C 0.14 1.24 11.13 -17.29 -0.19 1.05 16 24 N -0.59 -6.58 3.85 -9.82 -0.04 -6.62 16 25 H 0.43 4.08 2.69 -40.82 -0.11 3.97 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 29 H 0.07 0.39 8.04 -51.93 -0.42 -0.02 16 30 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.59 7.01 -51.93 -0.36 0.23 16 34 H 0.09 1.11 7.97 -51.93 -0.41 0.69 16 35 H 0.10 1.43 6.55 -51.93 -0.34 1.09 16 36 H 0.08 0.91 4.59 -51.93 -0.24 0.67 16 37 H 0.04 0.89 7.94 -51.93 -0.41 0.48 16 38 H 0.05 1.42 7.23 -51.93 -0.38 1.04 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.16 2.88 7.83 -52.49 -0.41 2.47 16 41 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -33.77 344.89 -7.29 -41.06 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.93 Total: 2.06 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.98 Total: 0.84 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.27 Total: -42.28 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.17 Total: -22.72 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.77 -7.29 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.866 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds