Wall clock time and date at job start Tue Mar 31 2020 07:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53009 * 109.46683 * 2 1 4 4 C 1.53001 * 109.47445 * 119.99476 * 2 1 3 5 5 C 1.53005 * 109.47095 * 175.00331 * 4 2 1 6 6 N 1.46493 * 109.47143 * 180.02562 * 5 4 2 7 7 C 1.46502 * 120.00163 * 277.12453 * 6 5 4 8 8 C 1.50702 * 109.47113 * 274.88112 * 7 6 5 9 9 H 1.07998 * 119.99451 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00036 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00313 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99702 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47090 * 60.00752 * 12 10 8 14 14 H 1.48504 * 109.46972 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47425 * 300.00073 * 12 10 8 16 16 C 1.34772 * 120.00310 * 97.11857 * 6 5 4 17 17 O 1.21502 * 120.00151 * 184.26412 * 16 6 5 18 18 C 1.48184 * 119.99686 * 4.27000 * 16 6 5 19 19 C 1.36020 * 119.76723 * 152.48582 * 18 16 6 20 20 C 1.41983 * 119.03341 * 180.02562 * 19 18 16 21 21 O 1.22183 * 120.69228 * 180.02562 * 20 19 18 22 22 C 1.41277 * 118.61591 * 359.97438 * 20 19 18 23 23 C 1.35368 * 119.44745 * 0.02562 * 22 20 19 24 24 N 1.34762 * 120.94989 * 359.97438 * 23 22 20 25 25 H 0.97002 * 119.25067 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.47403 * 299.99870 * 1 2 3 27 27 H 1.09003 * 109.47415 * 60.00635 * 1 2 3 28 28 H 1.09008 * 109.46549 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47403 * 240.00130 * 2 1 3 30 30 H 1.09002 * 109.46845 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46677 * 299.99817 * 3 2 1 32 32 H 1.09001 * 109.47095 * 59.99941 * 3 2 1 33 33 H 1.09001 * 109.46936 * 55.00664 * 4 2 1 34 34 H 1.09001 * 109.47334 * 295.00557 * 4 2 1 35 35 H 1.09001 * 109.46957 * 60.00346 * 5 4 2 36 36 H 1.09001 * 109.47215 * 300.00300 * 5 4 2 37 37 H 1.09004 * 109.46969 * 34.87327 * 7 6 5 38 38 H 1.08997 * 109.47827 * 154.87574 * 7 6 5 39 39 H 0.96992 * 120.00032 * 179.97438 * 11 10 8 40 40 H 1.07995 * 120.48132 * 0.03951 * 19 18 16 41 41 H 1.08002 * 120.27112 * 179.72771 * 22 20 19 42 42 H 1.08000 * 119.52413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8308 1.1880 6 7 4.0532 -1.5218 2.3838 7 6 4.2530 -0.7774 3.6297 8 6 5.6183 -0.1394 3.6203 9 1 6.2719 -0.2753 2.7713 10 6 6.0329 0.6176 4.6955 11 7 5.2372 0.7826 5.7295 12 14 7.7255 1.4079 4.6840 13 1 7.8305 2.3363 3.5298 14 1 7.9280 2.1625 5.9468 15 1 8.7637 0.3526 4.5666 16 6 4.3186 -2.8423 2.3380 17 8 4.6492 -3.4310 3.3482 18 6 4.2074 -3.5762 1.0555 19 6 4.9637 -4.6871 0.8453 20 6 4.8451 -5.3780 -0.3894 21 8 5.5096 -6.3793 -0.6101 22 6 3.9421 -4.8841 -1.3571 23 6 3.2181 -3.7729 -1.0859 24 7 3.3465 -3.1326 0.0929 25 1 2.8152 -2.3387 0.2614 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4427 -0.0005 31 1 1.6764 1.9564 -0.8900 32 1 1.6764 1.9564 0.8900 33 1 1.6055 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1678 1.1420 36 1 3.8533 -1.3937 0.3003 37 1 3.4908 -0.0031 3.7165 38 1 4.1764 -1.4592 4.4767 39 1 5.5290 1.3149 6.4860 40 1 5.6443 -5.0386 1.6066 41 1 3.8339 -5.3862 -2.3072 42 1 2.5277 -3.3940 -1.8250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931940615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:18 Heat of formation + Delta-G solvation = -43.923258 kcal Electronic energy + Delta-G solvation = -24049.327689 eV Core-core repulsion = 20608.841162 eV Total energy + Delta-G solvation = -3440.486527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.76395 -40.48384 -39.00801 -38.16362 -36.30564 -34.80247 -33.03860 -32.57485 -30.60979 -29.30067 -27.95033 -26.25654 -24.98950 -24.44891 -23.97387 -21.62804 -20.92568 -19.46510 -18.80758 -18.65550 -18.12556 -17.31199 -16.84375 -16.51459 -16.27902 -15.98078 -15.73143 -15.53069 -15.14726 -14.74143 -14.58974 -14.32281 -14.15716 -13.90472 -13.76420 -13.47528 -13.36332 -13.17902 -12.95905 -12.70204 -12.62872 -12.31876 -12.26879 -11.97464 -11.68247 -11.61133 -11.48607 -11.30593 -10.85403 -10.67759 -10.54162 -9.73297 -9.21059 -8.28019 -6.42456 -0.41451 0.31941 1.35817 1.39854 1.45502 1.48151 1.59096 2.00596 2.35650 2.68363 2.98697 3.06114 3.57704 3.69662 3.76972 3.86333 3.98976 4.00852 4.07775 4.29782 4.35572 4.57186 4.58276 4.72906 4.77345 4.88943 4.94221 4.98328 5.07932 5.12507 5.14650 5.16196 5.32643 5.37318 5.38733 5.51684 5.55732 5.56444 5.68589 5.87246 5.96339 6.33310 6.64083 6.90011 6.96367 7.28504 8.79304 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.005902 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.807231 B = 4743.133097 C = 6549.816736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.157 4.157 4 C -0.147 4.147 5 C 0.063 3.937 6 N -0.582 5.582 7 C 0.260 3.740 8 C -0.551 4.551 9 H 0.056 0.944 10 C 0.016 3.984 11 N -0.922 5.922 12 Si 0.962 3.038 13 H -0.258 1.258 14 H -0.279 1.279 15 H -0.281 1.281 16 C 0.535 3.465 17 O -0.561 6.561 18 C 0.140 3.860 19 C -0.237 4.237 20 C 0.376 3.624 21 O -0.587 6.587 22 C -0.309 4.309 23 C 0.178 3.822 24 N -0.570 5.570 25 H 0.440 0.560 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.037 0.963 38 H 0.008 0.992 39 H 0.268 0.732 40 H 0.126 0.874 41 H 0.173 0.827 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 2.294 -18.555 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.215 4.215 4 C -0.186 4.186 5 C -0.060 4.060 6 N -0.311 5.311 7 C 0.139 3.861 8 C -0.590 4.590 9 H 0.075 0.925 10 C -0.184 4.184 11 N -0.561 5.561 12 Si 0.786 3.214 13 H -0.183 1.183 14 H -0.204 1.204 15 H -0.206 1.206 16 C 0.321 3.679 17 O -0.439 6.439 18 C 0.028 3.972 19 C -0.264 4.264 20 C 0.273 3.727 21 O -0.479 6.479 22 C -0.332 4.332 23 C 0.048 3.952 24 N -0.191 5.191 25 H 0.292 0.708 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.026 0.974 39 H 0.077 0.923 40 H 0.144 0.856 41 H 0.190 0.810 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -12.666 1.669 -17.898 21.990 hybrid contribution 1.109 0.595 1.283 1.797 sum -11.557 2.264 -16.615 20.366 Atomic orbital electron populations 1.21862 0.93805 1.02642 1.02300 1.21145 0.96813 0.96375 0.96407 1.21964 1.01213 0.96118 1.02156 1.22326 0.93033 1.01827 1.01387 1.22670 0.95852 1.00607 0.86831 1.48236 1.61862 1.06819 1.14218 1.18919 0.96175 0.90236 0.80723 1.21634 1.01671 1.31672 1.03982 0.92544 1.25748 1.01290 0.96728 0.94658 1.70015 1.38275 1.40337 1.07491 0.85555 0.79231 0.78462 0.78135 1.18274 1.20430 1.20641 1.18548 0.79023 0.82826 0.87536 1.90797 1.48840 1.68477 1.35796 1.20010 0.93576 0.94849 0.88760 1.22817 1.04219 0.97129 1.02185 1.17769 0.83248 0.84603 0.87066 1.90747 1.47628 1.27697 1.81833 1.22432 1.04664 1.02151 1.03994 1.22823 0.95619 0.90507 0.86228 1.42885 1.35151 1.28251 1.12847 0.70813 0.93710 0.90947 0.91503 0.87996 0.92801 0.90891 0.93824 0.90658 0.91409 0.88557 0.87356 0.94501 0.97412 0.92260 0.85570 0.80972 0.73996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 71.98 0.66 -0.74 16 2 C -0.09 -0.97 2.87 -10.79 -0.03 -1.00 16 3 C -0.16 -2.23 8.95 71.99 0.64 -1.58 16 4 C -0.15 -2.68 4.07 30.60 0.12 -2.55 16 5 C 0.06 1.55 4.64 86.38 0.40 1.95 16 6 N -0.58 -22.14 2.46 -829.20 -2.04 -24.18 16 7 C 0.26 12.88 5.26 85.63 0.45 13.34 16 8 C -0.55 -29.81 9.38 25.60 0.24 -29.57 16 9 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 10 C 0.02 0.87 5.46 84.65 0.46 1.34 16 11 N -0.92 -53.17 13.29 21.45 0.28 -52.88 16 12 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 13 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 C 0.53 21.63 7.54 86.89 0.66 22.29 16 17 O -0.56 -28.66 16.08 -3.72 -0.06 -28.72 16 18 C 0.14 4.30 6.27 40.54 0.25 4.56 16 19 C -0.24 -8.41 9.54 22.68 0.22 -8.19 16 20 C 0.38 12.65 6.78 23.95 0.16 12.82 16 21 O -0.59 -25.05 17.89 -5.92 -0.11 -25.15 16 22 C -0.31 -6.26 10.00 22.35 0.22 -6.03 16 23 C 0.18 2.00 11.13 83.58 0.93 2.93 16 24 N -0.57 -10.18 3.85 -184.98 -0.71 -10.89 16 25 H 0.44 6.12 2.69 -92.71 -0.25 5.88 16 26 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.10 0.46 8.04 -2.39 -0.02 0.44 16 30 H 0.05 0.86 6.57 -2.39 -0.02 0.84 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.18 7.01 -2.39 -0.02 1.16 16 34 H 0.07 1.60 7.97 -2.39 -0.02 1.58 16 35 H 0.10 2.57 6.55 -2.39 -0.02 2.55 16 36 H 0.11 2.02 4.59 -2.39 -0.01 2.01 16 37 H 0.04 1.82 7.94 -2.38 -0.02 1.80 16 38 H 0.01 0.45 7.23 -2.39 -0.02 0.43 16 39 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.13 5.15 7.83 -2.91 -0.02 5.13 16 41 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 42 H 0.24 -0.71 8.06 -2.91 -0.02 -0.73 16 Total: -1.00 -82.76 344.89 5.57 -77.19 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.78 Total: 9.96 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.40 Total: 9.54 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -2.47 Total: -87.96 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -0.17 Total: -53.87 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -82.76 5.57 -77.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.267 kcal (2) G-P(sol) polarization free energy of solvation -82.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds