Wall clock time and date at job start Tue Mar 31 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46968 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38017 * 119.51303 * 124.99810 * 4 3 2 6 6 C 1.39927 * 119.13249 * 180.25104 * 5 4 3 7 7 C 1.48165 * 120.89150 * 179.73304 * 6 5 4 8 8 O 1.21518 * 119.99749 * 321.96104 * 7 6 5 9 9 N 1.34776 * 120.00208 * 141.96505 * 7 6 5 10 10 C 1.46495 * 120.00009 * 4.82026 * 9 7 6 11 11 C 1.46505 * 119.99940 * 184.82481 * 9 7 6 12 12 H 1.08999 * 109.46858 * 359.97438 * 11 9 7 13 13 C 1.53003 * 109.46897 * 119.99711 * 11 9 7 14 14 C 1.50704 * 109.46895 * 239.99680 * 11 9 7 15 15 H 1.07996 * 120.00049 * 0.02562 * 14 11 9 16 16 C 1.37871 * 119.99761 * 179.97438 * 14 11 9 17 17 N 1.31520 * 120.00160 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99911 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47176 * 120.00278 * 18 16 14 21 21 H 1.48498 * 109.47057 * 240.00201 * 18 16 14 22 22 C 1.39604 * 118.21816 * 359.53053 * 6 5 4 23 23 C 1.38860 * 118.94831 * 0.46960 * 22 6 5 24 24 O 1.35687 * 119.62142 * 179.74572 * 23 22 6 25 25 N 1.31878 * 119.51436 * 305.01972 * 4 3 2 26 26 H 1.09004 * 109.46974 * 59.99931 * 1 2 3 27 27 H 1.08998 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47450 * 299.99983 * 1 2 3 29 29 H 1.08998 * 109.47033 * 239.99754 * 2 1 3 30 30 H 1.09000 * 109.46874 * 119.99565 * 2 1 3 31 31 H 1.09002 * 109.47022 * 59.99754 * 3 2 1 32 32 H 1.08991 * 109.47169 * 299.99585 * 3 2 1 33 33 H 1.08007 * 120.43146 * 359.97438 * 5 4 3 34 34 H 1.09002 * 109.47295 * 84.80199 * 10 9 7 35 35 H 1.09001 * 109.47253 * 204.80247 * 10 9 7 36 36 H 1.09003 * 109.47471 * 324.80956 * 10 9 7 37 37 H 1.08997 * 109.46952 * 179.97438 * 13 11 9 38 38 H 1.08993 * 109.47051 * 300.00131 * 13 11 9 39 39 H 1.08999 * 109.47238 * 60.00389 * 13 11 9 40 40 H 0.96996 * 120.00078 * 179.97438 * 17 16 14 41 41 H 1.07997 * 120.53145 * 180.19602 * 22 6 5 42 42 H 0.96698 * 114.00028 * 270.01949 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2273 2.1312 -0.9831 6 6 5.6265 2.1215 -0.9779 7 6 6.3961 2.8426 -2.0186 8 8 6.0010 2.8542 -3.1677 9 7 7.5343 3.4856 -1.6908 10 6 8.0670 3.3843 -0.3299 11 6 8.2388 4.2860 -2.6955 12 1 7.6969 4.2421 -3.6402 13 6 8.3234 5.7387 -2.2225 14 6 9.6296 3.7388 -2.8887 15 1 9.9559 2.8804 -2.3203 16 6 10.4850 4.3333 -3.7918 17 7 10.0875 5.3783 -4.4843 18 14 12.2087 3.6545 -4.0318 19 1 12.4081 2.4834 -3.1408 20 1 12.3833 3.2355 -5.4458 21 1 13.2049 4.7047 -3.7002 22 6 6.2780 1.4176 0.0365 23 6 5.5170 0.7514 0.9880 24 8 6.1361 0.0588 1.9769 25 7 4.1962 0.7840 0.9409 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.6867 2.6670 -1.7494 34 1 8.6715 2.4815 -0.2426 35 1 8.6839 4.2569 -0.1153 36 1 7.2418 3.3390 0.3809 37 1 8.8480 6.3341 -2.9698 38 1 7.3175 6.1344 -2.0827 39 1 8.8656 5.7822 -1.2779 40 1 10.6894 5.7968 -5.1194 41 1 7.3568 1.3879 0.0781 42 1 6.3157 -0.8655 1.7568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931942897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:53 Heat of formation + Delta-G solvation = -42.847967 kcal Electronic energy + Delta-G solvation = -23384.480380 eV Core-core repulsion = 19944.040482 eV Total energy + Delta-G solvation = -3440.439899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83240 -38.96028 -37.39440 -35.51629 -35.01968 -33.26792 -32.18463 -30.74418 -29.33329 -27.21611 -26.27857 -25.30608 -24.39331 -22.88532 -21.87858 -20.73824 -19.20584 -18.12143 -17.02171 -16.74220 -16.18932 -15.96321 -15.47092 -15.23351 -15.07946 -14.71980 -14.26300 -14.02503 -13.69533 -13.05656 -12.97017 -12.88376 -12.61341 -12.26419 -12.16699 -11.82648 -11.65904 -11.53306 -11.48039 -11.28122 -11.12483 -10.86815 -10.84766 -10.79374 -10.32791 -10.24421 -9.82672 -9.73425 -9.23864 -9.07835 -8.81237 -8.49799 -7.75128 -6.13543 -4.21893 0.86334 0.92688 3.12306 3.22529 3.30646 3.33215 3.39005 3.62833 3.85337 4.34103 4.38542 4.63536 4.86569 4.89342 4.98936 5.01423 5.09780 5.18256 5.30262 5.44140 5.51472 5.60720 5.61528 5.66806 5.79782 5.86451 5.93262 6.04186 6.11858 6.16269 6.20270 6.39123 6.68235 6.73625 6.95581 7.28757 7.37056 7.39789 7.63572 7.82730 7.92248 8.09487 8.35689 8.69815 8.86961 9.44733 10.91949 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.003611 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.553285 B = 7752.954847 C = 8310.133417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.068 4.068 4 C 0.147 3.853 5 C -0.132 4.132 6 C -0.051 4.051 7 C 0.543 3.457 8 O -0.537 6.537 9 N -0.579 5.579 10 C 0.079 3.921 11 C 0.257 3.743 12 H 0.065 0.935 13 C -0.148 4.148 14 C -0.527 4.527 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.168 4.168 23 C 0.306 3.694 24 O -0.480 6.480 25 N -0.493 5.493 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.012 0.988 39 H 0.032 0.968 40 H 0.264 0.736 41 H 0.156 0.844 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 -8.197 11.048 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.106 4.106 4 C 0.009 3.991 5 C -0.153 4.153 6 C -0.062 4.062 7 C 0.328 3.672 8 O -0.415 6.415 9 N -0.309 5.309 10 C -0.065 4.065 11 C 0.157 3.843 12 H 0.083 0.917 13 C -0.207 4.207 14 C -0.565 4.565 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.189 4.189 23 C 0.127 3.873 24 O -0.287 6.287 25 N -0.213 5.213 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.031 0.969 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.173 0.827 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -12.866 -7.954 11.243 18.847 hybrid contribution 1.716 -0.359 -0.828 1.939 sum -11.150 -8.314 10.415 17.375 Atomic orbital electron populations 1.21784 0.95655 1.01686 1.01827 1.21439 0.95505 0.95615 1.02871 1.20608 0.87862 0.98599 1.03504 1.20876 0.96460 0.92345 0.89377 1.22071 0.93237 1.00078 0.99899 1.20577 0.94344 0.96546 0.94757 1.18124 0.81597 0.80054 0.87406 1.90759 1.69514 1.61623 1.19631 1.48226 1.22462 1.47660 1.12578 1.21934 0.98595 1.02630 0.83301 1.19057 0.91765 0.86556 0.86883 0.91673 1.22118 0.97892 0.99309 1.01354 1.21321 0.97250 1.14493 1.23452 0.92143 1.24894 0.98761 0.94855 0.95240 1.69882 1.36201 1.21137 1.25294 0.86414 0.83815 0.78901 0.78119 1.19786 1.20862 1.20875 1.22717 1.02877 0.99852 0.93465 1.18930 0.86694 0.94171 0.87456 1.84789 1.77089 1.27779 1.39036 1.66705 1.09971 1.20175 1.24444 0.92663 0.92711 0.92668 0.92079 0.90894 0.89809 0.89866 0.83646 0.92870 0.90236 0.92454 0.88546 0.96852 0.94929 0.92638 0.82699 0.74376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.06 5.79 -26.73 -0.15 -1.21 16 3 C -0.07 -0.66 5.61 -27.88 -0.16 -0.82 16 4 C 0.15 1.90 6.17 -82.65 -0.51 1.39 16 5 C -0.13 -1.92 9.34 -39.03 -0.36 -2.29 16 6 C -0.05 -0.85 5.29 -104.68 -0.55 -1.40 16 7 C 0.54 11.33 7.41 -12.18 -0.09 11.23 16 8 O -0.54 -13.16 16.27 5.35 0.09 -13.07 16 9 N -0.58 -12.25 2.75 -176.25 -0.49 -12.74 16 10 C 0.08 1.33 8.08 59.84 0.48 1.81 16 11 C 0.26 6.45 2.63 -69.08 -0.18 6.27 16 12 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 13 C -0.15 -3.47 8.96 37.16 0.33 -3.14 16 14 C -0.53 -13.99 8.37 -34.44 -0.29 -14.28 16 15 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.69 11.32 55.43 0.63 -24.07 16 18 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 C -0.17 -2.41 7.61 -38.84 -0.30 -2.71 16 23 C 0.31 4.14 7.74 -17.16 -0.13 4.01 16 24 O -0.48 -5.45 13.56 -18.76 -0.25 -5.70 16 25 N -0.49 -6.80 9.87 -9.60 -0.09 -6.90 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.73 7.94 -51.93 -0.41 0.31 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 33 H 0.15 1.99 7.94 -52.48 -0.42 1.58 16 34 H 0.05 0.83 6.89 -51.93 -0.36 0.47 16 35 H 0.08 1.35 6.44 -51.93 -0.33 1.01 16 36 H 0.06 0.84 5.83 -51.93 -0.30 0.54 16 37 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.16 2.10 5.27 -52.49 -0.28 1.82 16 42 H 0.40 2.54 9.06 45.56 0.41 2.95 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -31.95 344.52 -6.77 -38.72 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.19 Total: 3.04 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.64 Total: -0.21 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.05 Total: -43.70 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.17 Total: -18.78 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.95 -6.77 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931942897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.124 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds