Wall clock time and date at job start Tue Mar 31 2020 06:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46968 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38017 * 119.51303 * 124.99810 * 4 3 2 6 6 C 1.39927 * 119.13249 * 180.25104 * 5 4 3 7 7 C 1.48165 * 120.89150 * 179.73304 * 6 5 4 8 8 O 1.21518 * 119.99749 * 321.96104 * 7 6 5 9 9 N 1.34776 * 120.00208 * 141.96505 * 7 6 5 10 10 C 1.46495 * 120.00009 * 4.82026 * 9 7 6 11 11 C 1.46505 * 119.99940 * 184.82481 * 9 7 6 12 12 H 1.08999 * 109.46858 * 359.97438 * 11 9 7 13 13 C 1.53003 * 109.46897 * 119.99711 * 11 9 7 14 14 C 1.50704 * 109.46895 * 239.99680 * 11 9 7 15 15 H 1.07996 * 120.00049 * 0.02562 * 14 11 9 16 16 C 1.37871 * 119.99761 * 179.97438 * 14 11 9 17 17 N 1.31520 * 120.00160 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99911 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47176 * 120.00278 * 18 16 14 21 21 H 1.48498 * 109.47057 * 240.00201 * 18 16 14 22 22 C 1.39604 * 118.21816 * 359.53053 * 6 5 4 23 23 C 1.38860 * 118.94831 * 0.46960 * 22 6 5 24 24 O 1.35687 * 119.62142 * 179.74572 * 23 22 6 25 25 N 1.31878 * 119.51436 * 305.01972 * 4 3 2 26 26 H 1.09004 * 109.46974 * 59.99931 * 1 2 3 27 27 H 1.08998 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47450 * 299.99983 * 1 2 3 29 29 H 1.08998 * 109.47033 * 239.99754 * 2 1 3 30 30 H 1.09000 * 109.46874 * 119.99565 * 2 1 3 31 31 H 1.09002 * 109.47022 * 59.99754 * 3 2 1 32 32 H 1.08991 * 109.47169 * 299.99585 * 3 2 1 33 33 H 1.08007 * 120.43146 * 359.97438 * 5 4 3 34 34 H 1.09002 * 109.47295 * 84.80199 * 10 9 7 35 35 H 1.09001 * 109.47253 * 204.80247 * 10 9 7 36 36 H 1.09003 * 109.47471 * 324.80956 * 10 9 7 37 37 H 1.08997 * 109.46952 * 179.97438 * 13 11 9 38 38 H 1.08993 * 109.47051 * 300.00131 * 13 11 9 39 39 H 1.08999 * 109.47238 * 60.00389 * 13 11 9 40 40 H 0.96996 * 120.00078 * 179.97438 * 17 16 14 41 41 H 1.07997 * 120.53145 * 180.19602 * 22 6 5 42 42 H 0.96698 * 114.00028 * 270.01949 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2273 2.1312 -0.9831 6 6 5.6265 2.1215 -0.9779 7 6 6.3961 2.8426 -2.0186 8 8 6.0010 2.8542 -3.1677 9 7 7.5343 3.4856 -1.6908 10 6 8.0670 3.3843 -0.3299 11 6 8.2388 4.2860 -2.6955 12 1 7.6969 4.2421 -3.6402 13 6 8.3234 5.7387 -2.2225 14 6 9.6296 3.7388 -2.8887 15 1 9.9559 2.8804 -2.3203 16 6 10.4850 4.3333 -3.7918 17 7 10.0875 5.3783 -4.4843 18 14 12.2087 3.6545 -4.0318 19 1 12.4081 2.4834 -3.1408 20 1 12.3833 3.2355 -5.4458 21 1 13.2049 4.7047 -3.7002 22 6 6.2780 1.4176 0.0365 23 6 5.5170 0.7514 0.9880 24 8 6.1361 0.0588 1.9769 25 7 4.1962 0.7840 0.9409 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.6867 2.6670 -1.7494 34 1 8.6715 2.4815 -0.2426 35 1 8.6839 4.2569 -0.1153 36 1 7.2418 3.3390 0.3809 37 1 8.8480 6.3341 -2.9698 38 1 7.3175 6.1344 -2.0827 39 1 8.8656 5.7822 -1.2779 40 1 10.6894 5.7968 -5.1194 41 1 7.3568 1.3879 0.0781 42 1 6.3157 -0.8655 1.7568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931942897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:50 Heat of formation + Delta-G solvation = -65.872557 kcal Electronic energy + Delta-G solvation = -23385.478802 eV Core-core repulsion = 19944.040482 eV Total energy + Delta-G solvation = -3441.438320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02323 -40.48107 -38.34122 -37.29699 -35.93754 -34.93881 -33.58462 -31.76943 -31.08694 -28.32252 -27.52732 -27.32412 -25.76310 -23.89905 -23.06779 -21.99563 -20.55620 -19.37846 -18.55564 -18.30054 -17.60366 -17.24586 -17.02671 -16.42391 -16.36185 -15.84978 -15.82524 -15.10781 -14.72951 -14.60591 -14.51167 -14.17284 -13.73362 -13.57466 -13.43040 -13.09949 -12.99534 -12.88639 -12.76700 -12.67117 -12.57991 -12.31928 -12.22286 -12.14159 -11.99620 -11.55471 -11.29208 -11.21395 -10.90446 -10.57651 -10.39699 -9.86831 -9.48548 -8.17504 -6.34092 -0.34903 -0.12898 1.40509 1.42412 1.53392 1.67946 2.08992 2.34443 2.41999 2.70149 3.11101 3.29737 3.45191 3.85254 3.85914 4.08929 4.18182 4.21768 4.31533 4.38972 4.54005 4.58766 4.64916 4.75706 4.84259 4.85185 4.89196 4.90991 4.97487 5.01057 5.03664 5.21991 5.36353 5.40070 5.42793 5.51120 5.52875 5.61537 5.95823 6.10639 6.56356 6.61322 6.72223 6.80996 7.11888 7.38166 8.87417 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.003611 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.553285 B = 7752.954847 C = 8310.133417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.068 4.068 4 C 0.156 3.844 5 C -0.139 4.139 6 C -0.065 4.065 7 C 0.538 3.462 8 O -0.587 6.587 9 N -0.585 5.585 10 C 0.078 3.922 11 C 0.261 3.739 12 H 0.014 0.986 13 C -0.135 4.135 14 C -0.539 4.539 15 H 0.062 0.938 16 C 0.016 3.984 17 N -0.916 5.916 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.166 4.166 23 C 0.316 3.684 24 O -0.481 6.481 25 N -0.498 5.498 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.049 0.951 40 H 0.265 0.735 41 H 0.164 0.836 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 -9.446 13.232 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.106 4.106 4 C 0.018 3.982 5 C -0.160 4.160 6 C -0.076 4.076 7 C 0.326 3.674 8 O -0.468 6.468 9 N -0.314 5.314 10 C -0.064 4.064 11 C 0.160 3.840 12 H 0.032 0.968 13 C -0.193 4.193 14 C -0.578 4.578 15 H 0.080 0.920 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.791 3.209 19 H -0.188 1.188 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.188 4.188 23 C 0.137 3.863 24 O -0.291 6.291 25 N -0.218 5.218 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.181 0.819 42 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -13.042 -9.233 13.478 20.904 hybrid contribution 1.714 -0.026 -1.464 2.254 sum -11.327 -9.258 12.014 18.931 Atomic orbital electron populations 1.21758 0.94143 1.02275 1.02447 1.21394 0.96773 0.94823 1.02054 1.20751 0.85578 0.99418 1.04819 1.21294 0.97874 0.90814 0.88201 1.22179 0.92552 1.00653 1.00618 1.20204 0.94784 0.97928 0.94685 1.18753 0.81369 0.79534 0.87745 1.90719 1.70634 1.63473 1.22018 1.48190 1.22591 1.47146 1.13507 1.22154 0.99636 1.03338 0.81295 1.18671 0.90930 0.88161 0.86277 0.96816 1.21913 0.98319 0.97868 1.01234 1.21572 0.97898 1.14602 1.23704 0.91953 1.25726 1.02623 0.95089 0.94908 1.70018 1.37543 1.22202 1.25757 0.85391 0.79180 0.78594 0.77756 1.18834 1.21174 1.19959 1.22705 1.03275 0.99675 0.93098 1.18946 0.86591 0.93674 0.87067 1.84742 1.76736 1.29514 1.38149 1.66859 1.10129 1.20233 1.24627 0.92125 0.92191 0.91975 0.92859 0.91747 0.88546 0.88474 0.83518 0.91337 0.90292 0.89954 0.90985 0.95929 0.93159 0.92537 0.81906 0.71654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.11 -1.82 5.79 30.60 0.18 -1.64 16 3 C -0.07 -1.17 5.61 29.85 0.17 -1.01 16 4 C 0.16 3.75 6.17 42.50 0.26 4.01 16 5 C -0.14 -3.96 9.34 22.63 0.21 -3.75 16 6 C -0.07 -2.12 5.29 -19.90 -0.11 -2.23 16 7 C 0.54 22.99 7.41 86.88 0.64 23.64 16 8 O -0.59 -30.22 16.27 -3.77 -0.06 -30.28 16 9 N -0.59 -25.01 2.75 -829.83 -2.28 -27.30 16 10 C 0.08 2.51 8.08 127.77 1.03 3.54 16 11 C 0.26 13.50 2.63 44.25 0.12 13.61 16 12 H 0.01 0.85 6.91 -2.39 -0.02 0.84 16 13 C -0.13 -6.42 8.96 71.98 0.64 -5.78 16 14 C -0.54 -28.98 8.37 25.60 0.21 -28.77 16 15 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 16 C 0.02 0.88 5.30 84.65 0.45 1.33 16 17 N -0.92 -52.18 11.32 21.45 0.24 -51.94 16 18 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 C -0.17 -4.48 7.61 22.75 0.17 -4.31 16 23 C 0.32 7.76 7.74 84.79 0.66 8.42 16 24 O -0.48 -9.41 13.56 -90.05 -1.22 -10.63 16 25 N -0.50 -12.60 9.87 -297.16 -2.93 -15.53 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.15 7.94 -2.39 -0.02 1.14 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 1.42 7.86 -2.39 -0.02 1.40 16 33 H 0.15 4.04 7.94 -2.91 -0.02 4.02 16 34 H 0.07 2.00 6.89 -2.39 -0.02 1.99 16 35 H 0.08 2.55 6.44 -2.39 -0.02 2.54 16 36 H 0.08 2.25 5.83 -2.39 -0.01 2.24 16 37 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 2.16 6.66 -2.39 -0.02 2.14 16 40 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.16 4.06 5.27 -2.91 -0.02 4.04 16 42 H 0.42 3.98 9.06 -74.06 -0.67 3.31 16 Total: -1.00 -70.48 344.52 1.50 -68.98 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.37 Total: 16.18 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.36 Total: 5.96 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -4.97 Total: -94.76 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -1.28 Total: -40.91 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.48 1.50 -68.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931942897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.111 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds