Wall clock time and date at job start Tue Mar 31 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47251 * 2 1 4 4 C 1.50699 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.38019 * 119.51219 * 125.25790 * 4 3 2 6 6 C 1.39928 * 119.12971 * 180.22756 * 5 4 3 7 7 C 1.48167 * 120.89036 * 179.79601 * 6 5 4 8 8 O 1.21511 * 120.00080 * 35.33902 * 7 6 5 9 9 N 1.34774 * 120.00448 * 215.33365 * 7 6 5 10 10 C 1.46507 * 119.99345 * 356.34478 * 9 7 6 11 11 C 1.46495 * 120.00633 * 176.34596 * 9 7 6 12 12 H 1.08998 * 109.46749 * 359.97438 * 11 9 7 13 13 C 1.53008 * 109.47270 * 240.00321 * 11 9 7 14 14 C 1.50695 * 109.47591 * 119.99898 * 11 9 7 15 15 H 1.08006 * 119.99640 * 0.02562 * 14 11 9 16 16 C 1.37878 * 120.00608 * 179.97438 * 14 11 9 17 17 N 1.31508 * 120.00353 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 119.99330 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.46700 * 269.99329 * 18 16 14 20 20 H 1.48494 * 109.47285 * 29.99502 * 18 16 14 21 21 H 1.48503 * 109.46700 * 150.00088 * 18 16 14 22 22 C 1.39613 * 118.21797 * 359.52441 * 6 5 4 23 23 C 1.38850 * 118.94689 * 0.24971 * 22 6 5 24 24 O 1.35686 * 119.61745 * 179.97438 * 23 22 6 25 25 N 1.31872 * 119.51324 * 305.00004 * 4 3 2 26 26 H 1.09002 * 109.47509 * 59.99674 * 1 2 3 27 27 H 1.09001 * 109.47295 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46714 * 299.99514 * 1 2 3 29 29 H 1.09007 * 109.47044 * 240.00530 * 2 1 3 30 30 H 1.09002 * 109.47509 * 120.00326 * 2 1 3 31 31 H 1.08995 * 109.46864 * 60.00579 * 3 2 1 32 32 H 1.09002 * 109.47130 * 300.00558 * 3 2 1 33 33 H 1.08002 * 120.43649 * 0.02562 * 5 4 3 34 34 H 1.08999 * 109.47255 * 275.35923 * 10 9 7 35 35 H 1.08995 * 109.47328 * 35.36622 * 10 9 7 36 36 H 1.09006 * 109.46701 * 155.36048 * 10 9 7 37 37 H 1.08997 * 109.47207 * 180.02562 * 13 11 9 38 38 H 1.09000 * 109.46520 * 299.99884 * 13 11 9 39 39 H 1.09003 * 109.46729 * 59.99448 * 13 11 9 40 40 H 0.97000 * 120.00137 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.52231 * 180.27120 * 22 6 5 42 42 H 0.96701 * 113.99586 * 90.00722 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2265 2.1360 -0.9816 6 6 5.6258 2.1266 -0.9774 7 6 6.3945 2.8539 -2.0144 8 8 5.9781 3.9085 -2.4515 9 7 7.5556 2.3460 -2.4729 10 6 8.0981 1.1164 -1.8896 11 6 8.2752 3.0232 -3.5544 12 1 7.7225 3.9126 -3.8573 13 6 8.4103 2.0761 -4.7485 14 6 9.6459 3.4229 -3.0726 15 1 9.9508 3.1949 -2.0619 16 6 10.5113 4.0788 -3.9222 17 7 11.7077 4.4272 -3.5019 18 14 9.9842 4.4727 -5.6705 19 1 10.3544 3.3463 -6.5647 20 1 8.5134 4.6738 -5.7107 21 1 10.6659 5.7108 -6.1260 22 6 6.2781 1.4183 0.0335 23 6 5.5179 0.7515 0.9850 24 8 6.1378 0.0585 1.9732 25 7 4.1970 0.7841 0.9391 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.6853 2.6761 -1.7444 34 1 8.6723 1.3608 -0.9959 35 1 7.2791 0.4481 -1.6239 36 1 8.7467 0.6255 -2.6153 37 1 8.9461 2.5799 -5.5529 38 1 8.9627 1.1866 -4.4458 39 1 7.4187 1.7871 -5.0969 40 1 12.3164 4.8890 -4.0995 41 1 7.3569 1.3899 0.0749 42 1 6.3176 0.5810 2.7668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931942899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:56 Heat of formation + Delta-G solvation = -32.656698 kcal Electronic energy + Delta-G solvation = -23462.011135 eV Core-core repulsion = 20022.013163 eV Total energy + Delta-G solvation = -3439.997972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.90095 -39.11715 -37.42828 -35.72720 -35.06484 -33.28299 -32.23312 -30.83798 -30.17532 -27.29917 -26.38427 -25.27434 -24.51284 -22.92514 -21.95270 -20.84342 -19.24486 -18.18988 -17.19410 -16.91765 -16.28735 -15.96765 -15.63853 -15.46814 -15.09613 -14.90120 -14.35482 -13.94128 -13.83506 -13.21471 -13.17384 -12.90807 -12.65449 -12.38560 -12.31748 -12.12862 -11.87875 -11.81586 -11.69169 -11.51038 -11.35010 -11.23789 -10.87260 -10.75266 -10.23082 -9.96341 -9.80423 -9.66666 -9.41328 -9.15896 -8.85838 -8.70440 -7.91355 -6.21121 -4.22791 0.79162 0.88605 3.04104 3.18536 3.32414 3.33837 3.34702 3.47047 3.76911 4.29025 4.36197 4.53150 4.80824 4.86008 4.94073 4.97328 5.04953 5.12269 5.27399 5.39535 5.46059 5.55355 5.58442 5.61355 5.74874 5.82900 5.86325 5.99706 6.05974 6.08708 6.14491 6.16375 6.24001 6.35112 6.38012 6.74407 6.98745 7.17080 7.34901 7.52219 7.78882 7.98613 8.34695 8.62647 8.79562 9.38841 10.91461 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024553 B = 0.003800 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.127235 B = 7366.550536 C = 8043.798453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.068 4.068 4 C 0.147 3.853 5 C -0.131 4.131 6 C -0.053 4.053 7 C 0.546 3.454 8 O -0.537 6.537 9 N -0.574 5.574 10 C 0.078 3.922 11 C 0.229 3.771 12 H 0.065 0.935 13 C -0.163 4.163 14 C -0.530 4.530 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.893 5.893 18 Si 0.883 3.117 19 H -0.276 1.276 20 H -0.263 1.263 21 H -0.293 1.293 22 C -0.168 4.168 23 C 0.308 3.692 24 O -0.480 6.480 25 N -0.492 5.492 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.034 0.966 40 H 0.267 0.733 41 H 0.159 0.841 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.381 -9.249 7.459 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.106 4.106 4 C 0.009 3.991 5 C -0.152 4.152 6 C -0.064 4.064 7 C 0.332 3.668 8 O -0.415 6.415 9 N -0.304 5.304 10 C -0.065 4.065 11 C 0.128 3.872 12 H 0.082 0.918 13 C -0.221 4.221 14 C -0.569 4.569 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.530 5.530 18 Si 0.712 3.288 19 H -0.203 1.203 20 H -0.188 1.188 21 H -0.220 1.220 22 C -0.189 4.189 23 C 0.129 3.871 24 O -0.287 6.287 25 N -0.212 5.212 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.176 0.824 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -16.805 -9.525 7.418 20.692 hybrid contribution 0.708 0.919 -1.100 1.599 sum -16.096 -8.606 6.318 19.315 Atomic orbital electron populations 1.21782 0.95640 1.01711 1.01803 1.21447 0.95500 0.95579 1.02964 1.20609 0.87828 0.98585 1.03532 1.20881 0.96477 0.92141 0.89571 1.22064 0.93185 0.99901 1.00047 1.20473 0.94278 0.96058 0.95592 1.18113 0.81464 0.85189 0.81998 1.90752 1.69551 1.22062 1.59180 1.47831 1.20542 1.25464 1.36530 1.22012 0.98677 0.86325 0.99470 1.19384 0.93306 0.91793 0.82730 0.91750 1.22484 0.99346 1.01015 0.99238 1.21113 0.96236 1.38581 1.00921 0.90266 1.24855 0.94588 0.94686 0.98491 1.69862 1.06898 1.39717 1.36510 0.86921 0.79515 0.77319 0.84996 1.20302 1.18782 1.22016 1.22819 1.03138 0.96988 0.95967 1.18933 0.86650 0.91276 0.90277 1.84791 1.77006 1.39365 1.27499 1.66713 1.09983 1.18630 1.25833 0.92709 0.92685 0.92649 0.92121 0.90809 0.89754 0.89900 0.83621 0.92308 0.92150 0.90120 0.92884 0.92362 0.94678 0.92318 0.82383 0.74250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -1.04 5.79 -26.73 -0.15 -1.19 16 3 C -0.07 -0.63 5.61 -27.88 -0.16 -0.79 16 4 C 0.15 1.83 6.17 -82.66 -0.51 1.32 16 5 C -0.13 -1.82 9.31 -39.03 -0.36 -2.19 16 6 C -0.05 -0.84 5.34 -104.67 -0.56 -1.40 16 7 C 0.55 10.90 7.44 -12.18 -0.09 10.81 16 8 O -0.54 -12.53 16.23 5.36 0.09 -12.44 16 9 N -0.57 -11.61 2.75 -176.26 -0.49 -12.10 16 10 C 0.08 1.27 8.05 59.85 0.48 1.75 16 11 C 0.23 5.41 2.22 -69.08 -0.15 5.26 16 12 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 13 C -0.16 -3.41 8.66 37.16 0.32 -3.09 16 14 C -0.53 -14.37 8.95 -34.44 -0.31 -14.68 16 15 H 0.08 2.30 7.89 -52.48 -0.41 1.89 16 16 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 17 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 18 Si 0.88 21.40 24.37 -169.99 -4.14 17.26 16 19 H -0.28 -6.39 6.87 56.52 0.39 -6.00 16 20 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.17 -2.34 7.62 -38.84 -0.30 -2.64 16 23 C 0.31 4.05 7.74 -17.17 -0.13 3.92 16 24 O -0.48 -5.34 13.56 -18.76 -0.25 -5.60 16 25 N -0.49 -6.59 9.87 -9.60 -0.09 -6.68 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.65 7.86 -51.93 -0.41 0.25 16 33 H 0.15 1.89 7.94 -52.49 -0.42 1.47 16 34 H 0.06 0.92 6.81 -51.93 -0.35 0.56 16 35 H 0.06 0.84 5.84 -51.93 -0.30 0.53 16 36 H 0.08 1.30 6.44 -51.93 -0.33 0.96 16 37 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 38 H 0.06 1.13 6.67 -51.93 -0.35 0.78 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.16 2.10 5.07 -52.49 -0.27 1.83 16 42 H 0.40 2.50 9.06 45.56 0.41 2.91 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -33.20 337.42 -5.72 -38.92 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.04 Total: 2.81 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.65 Total: -1.56 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.19 Total: -44.47 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.17 Total: -18.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.20 -5.72 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931942899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.266 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds