Wall clock time and date at job start Tue Mar 31 2020 06:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47251 * 2 1 4 4 C 1.50699 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.38019 * 119.51219 * 125.25790 * 4 3 2 6 6 C 1.39928 * 119.12971 * 180.22756 * 5 4 3 7 7 C 1.48167 * 120.89036 * 179.79601 * 6 5 4 8 8 O 1.21511 * 120.00080 * 35.33902 * 7 6 5 9 9 N 1.34774 * 120.00448 * 215.33365 * 7 6 5 10 10 C 1.46507 * 119.99345 * 356.34478 * 9 7 6 11 11 C 1.46495 * 120.00633 * 176.34596 * 9 7 6 12 12 H 1.08998 * 109.46749 * 359.97438 * 11 9 7 13 13 C 1.53008 * 109.47270 * 240.00321 * 11 9 7 14 14 C 1.50695 * 109.47591 * 119.99898 * 11 9 7 15 15 H 1.08006 * 119.99640 * 0.02562 * 14 11 9 16 16 C 1.37878 * 120.00608 * 179.97438 * 14 11 9 17 17 N 1.31508 * 120.00353 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 119.99330 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.46700 * 269.99329 * 18 16 14 20 20 H 1.48494 * 109.47285 * 29.99502 * 18 16 14 21 21 H 1.48503 * 109.46700 * 150.00088 * 18 16 14 22 22 C 1.39613 * 118.21797 * 359.52441 * 6 5 4 23 23 C 1.38850 * 118.94689 * 0.24971 * 22 6 5 24 24 O 1.35686 * 119.61745 * 179.97438 * 23 22 6 25 25 N 1.31872 * 119.51324 * 305.00004 * 4 3 2 26 26 H 1.09002 * 109.47509 * 59.99674 * 1 2 3 27 27 H 1.09001 * 109.47295 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46714 * 299.99514 * 1 2 3 29 29 H 1.09007 * 109.47044 * 240.00530 * 2 1 3 30 30 H 1.09002 * 109.47509 * 120.00326 * 2 1 3 31 31 H 1.08995 * 109.46864 * 60.00579 * 3 2 1 32 32 H 1.09002 * 109.47130 * 300.00558 * 3 2 1 33 33 H 1.08002 * 120.43649 * 0.02562 * 5 4 3 34 34 H 1.08999 * 109.47255 * 275.35923 * 10 9 7 35 35 H 1.08995 * 109.47328 * 35.36622 * 10 9 7 36 36 H 1.09006 * 109.46701 * 155.36048 * 10 9 7 37 37 H 1.08997 * 109.47207 * 180.02562 * 13 11 9 38 38 H 1.09000 * 109.46520 * 299.99884 * 13 11 9 39 39 H 1.09003 * 109.46729 * 59.99448 * 13 11 9 40 40 H 0.97000 * 120.00137 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.52231 * 180.27120 * 22 6 5 42 42 H 0.96701 * 113.99586 * 90.00722 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2265 2.1360 -0.9816 6 6 5.6258 2.1266 -0.9774 7 6 6.3945 2.8539 -2.0144 8 8 5.9781 3.9085 -2.4515 9 7 7.5556 2.3460 -2.4729 10 6 8.0981 1.1164 -1.8896 11 6 8.2752 3.0232 -3.5544 12 1 7.7225 3.9126 -3.8573 13 6 8.4103 2.0761 -4.7485 14 6 9.6459 3.4229 -3.0726 15 1 9.9508 3.1949 -2.0619 16 6 10.5113 4.0788 -3.9222 17 7 11.7077 4.4272 -3.5019 18 14 9.9842 4.4727 -5.6705 19 1 10.3544 3.3463 -6.5647 20 1 8.5134 4.6738 -5.7107 21 1 10.6659 5.7108 -6.1260 22 6 6.2781 1.4183 0.0335 23 6 5.5179 0.7515 0.9850 24 8 6.1378 0.0585 1.9732 25 7 4.1970 0.7841 0.9391 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.6853 2.6761 -1.7444 34 1 8.6723 1.3608 -0.9959 35 1 7.2791 0.4481 -1.6239 36 1 8.7467 0.6255 -2.6153 37 1 8.9461 2.5799 -5.5529 38 1 8.9627 1.1866 -4.4458 39 1 7.4187 1.7871 -5.0969 40 1 12.3164 4.8890 -4.0995 41 1 7.3569 1.3899 0.0749 42 1 6.3176 0.5810 2.7668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931942899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:54 Heat of formation + Delta-G solvation = -58.283431 kcal Electronic energy + Delta-G solvation = -23463.122393 eV Core-core repulsion = 20022.013163 eV Total energy + Delta-G solvation = -3441.109231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.06098 -40.56412 -38.35545 -37.42384 -35.95146 -34.92083 -33.73925 -32.09883 -31.53125 -28.39083 -27.55724 -27.19657 -25.87891 -23.90515 -23.12525 -22.00271 -20.56872 -19.44324 -18.89502 -18.35005 -17.62715 -17.26977 -17.10766 -16.68727 -16.51456 -15.74034 -15.67788 -15.22090 -14.95427 -14.72767 -14.65180 -14.19792 -14.15294 -13.75300 -13.57777 -13.39397 -13.13862 -13.00244 -12.93094 -12.70517 -12.52089 -12.35574 -12.09130 -12.00795 -11.65528 -11.54106 -11.42690 -11.26555 -10.93027 -10.82156 -10.42197 -9.87775 -9.56952 -8.37365 -6.42990 -0.37913 -0.13425 1.25719 1.35357 1.43583 1.64341 1.99002 2.25988 2.34467 2.67926 2.97650 3.24874 3.44234 3.84537 3.84798 4.07128 4.16876 4.21756 4.27178 4.38664 4.39036 4.49610 4.52733 4.56566 4.63624 4.71334 4.82822 4.85688 4.89221 4.94517 5.01802 5.04005 5.21978 5.26850 5.36798 5.40136 5.42826 5.51694 5.59353 6.13209 6.49348 6.55572 6.60104 6.80647 7.02206 7.24311 8.78508 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024553 B = 0.003800 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.127235 B = 7366.550536 C = 8043.798453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.067 4.067 4 C 0.155 3.845 5 C -0.135 4.135 6 C -0.067 4.067 7 C 0.543 3.457 8 O -0.580 6.580 9 N -0.581 5.581 10 C 0.077 3.923 11 C 0.231 3.769 12 H 0.036 0.964 13 C -0.156 4.156 14 C -0.530 4.530 15 H 0.047 0.953 16 C 0.025 3.975 17 N -0.938 5.938 18 Si 0.940 3.060 19 H -0.252 1.252 20 H -0.260 1.260 21 H -0.296 1.296 22 C -0.169 4.169 23 C 0.315 3.685 24 O -0.482 6.482 25 N -0.498 5.498 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.269 0.731 41 H 0.162 0.838 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.357 -10.764 7.400 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.105 4.105 4 C 0.017 3.983 5 C -0.155 4.155 6 C -0.077 4.077 7 C 0.331 3.669 8 O -0.462 6.462 9 N -0.310 5.310 10 C -0.064 4.064 11 C 0.128 3.872 12 H 0.054 0.946 13 C -0.214 4.214 14 C -0.568 4.568 15 H 0.065 0.935 16 C -0.174 4.174 17 N -0.577 5.577 18 Si 0.767 3.233 19 H -0.177 1.177 20 H -0.184 1.184 21 H -0.223 1.223 22 C -0.190 4.190 23 C 0.136 3.864 24 O -0.293 6.293 25 N -0.218 5.218 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.170 0.830 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.179 0.821 42 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -18.780 -11.081 7.396 23.025 hybrid contribution 1.302 1.362 -0.902 2.088 sum -17.478 -9.720 6.494 21.027 Atomic orbital electron populations 1.21755 0.94107 1.02235 1.02495 1.21399 0.96785 0.94917 1.02012 1.20753 0.85526 0.99261 1.04960 1.21328 0.97902 0.90712 0.88360 1.22196 0.92403 1.00203 1.00733 1.20152 0.94802 0.97320 0.95462 1.18694 0.81272 0.84771 0.82136 1.90714 1.70570 1.23994 1.60890 1.47860 1.20681 1.26349 1.36115 1.22201 0.99693 0.85145 0.99390 1.19077 0.91013 0.92220 0.84843 0.94565 1.22350 1.00937 1.00627 0.97500 1.21319 0.97873 1.38057 0.99549 0.93508 1.25635 0.94500 0.94640 1.02658 1.69990 1.08268 1.41224 1.38196 0.85993 0.79119 0.77667 0.80545 1.17746 1.18446 1.22303 1.22785 1.03335 0.97084 0.95808 1.18949 0.86607 0.90454 0.90368 1.84744 1.76720 1.39671 1.28133 1.66859 1.10050 1.18832 1.26073 0.91967 0.92301 0.92012 0.92783 0.92060 0.88549 0.88225 0.83045 0.92030 0.89363 0.89930 0.93579 0.90883 0.92307 0.92155 0.82051 0.71664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.11 -1.75 5.79 30.59 0.18 -1.58 16 3 C -0.07 -1.08 5.61 29.85 0.17 -0.91 16 4 C 0.15 3.53 6.17 42.50 0.26 3.80 16 5 C -0.13 -3.56 9.31 22.63 0.21 -3.35 16 6 C -0.07 -2.06 5.34 -19.90 -0.11 -2.17 16 7 C 0.54 21.77 7.44 86.88 0.65 22.42 16 8 O -0.58 -27.65 16.23 -3.75 -0.06 -27.71 16 9 N -0.58 -23.46 2.75 -829.85 -2.28 -25.74 16 10 C 0.08 2.44 8.05 127.77 1.03 3.47 16 11 C 0.23 10.94 2.22 44.25 0.10 11.04 16 12 H 0.04 1.93 5.96 -2.39 -0.01 1.91 16 13 C -0.16 -6.28 8.66 71.98 0.62 -5.66 16 14 C -0.53 -29.31 8.95 25.60 0.23 -29.08 16 15 H 0.05 2.82 7.89 -2.91 -0.02 2.80 16 16 C 0.02 1.41 5.45 84.66 0.46 1.87 16 17 N -0.94 -56.86 13.96 21.45 0.30 -56.56 16 18 Si 0.94 44.13 24.37 68.60 1.67 45.80 16 19 H -0.25 -10.81 6.87 99.48 0.68 -10.13 16 20 H -0.26 -11.98 6.53 99.48 0.65 -11.33 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 C -0.17 -4.49 7.62 22.75 0.17 -4.31 16 23 C 0.32 7.66 7.74 84.78 0.66 8.32 16 24 O -0.48 -9.59 13.56 -90.04 -1.22 -10.81 16 25 N -0.50 -12.28 9.87 -297.17 -2.93 -15.21 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 1.11 7.94 -2.39 -0.02 1.09 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.29 7.86 -2.39 -0.02 1.27 16 33 H 0.15 3.76 7.94 -2.91 -0.02 3.74 16 34 H 0.06 1.90 6.81 -2.39 -0.02 1.88 16 35 H 0.09 2.28 5.84 -2.39 -0.01 2.27 16 36 H 0.08 2.55 6.44 -2.38 -0.02 2.54 16 37 H 0.05 1.91 3.27 -2.39 -0.01 1.90 16 38 H 0.07 2.68 6.67 -2.39 -0.02 2.67 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.16 4.11 5.07 -2.91 -0.01 4.10 16 42 H 0.42 4.21 9.06 -74.06 -0.67 3.54 16 Total: -1.00 -72.78 337.42 1.11 -71.67 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.30 Total: 15.73 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.34 Total: 2.84 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -4.92 Total: -97.51 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.28 Total: -38.52 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.67 Total: 45.80 kcal Total: -72.78 1.11 -71.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931942899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.385 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds