Wall clock time and date at job start Tue Mar 31 2020 06:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38356 * 119.40724 * 84.72730 * 4 2 1 6 6 C 1.38337 * 119.45910 * 179.72734 * 5 4 2 7 7 C 1.39987 * 118.34846 * 0.53711 * 6 5 4 8 8 C 1.47522 * 120.59722 * 179.70943 * 7 6 5 9 9 O 1.21589 * 119.99874 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00101 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00040 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47233 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47230 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47085 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00039 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99983 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00107 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47090 * 90.00129 * 18 16 14 20 20 H 1.48503 * 109.47042 * 209.99554 * 18 16 14 21 21 H 1.48498 * 109.47135 * 329.99723 * 18 16 14 22 22 C 1.40281 * 118.80406 * 359.72294 * 7 6 5 23 23 O 1.35423 * 119.79880 * 180.02562 * 22 7 6 24 24 N 1.31879 * 119.40779 * 264.99839 * 4 2 1 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.08004 * 120.26875 * 359.97438 * 5 4 2 33 33 H 1.07997 * 120.82958 * 180.23490 * 6 5 4 34 34 H 0.96998 * 120.00425 * 0.02562 * 10 8 7 35 35 H 1.09008 * 109.46866 * 299.99848 * 11 10 8 36 36 H 1.08998 * 109.47116 * 59.99477 * 11 10 8 37 37 H 1.09008 * 109.46794 * 299.99554 * 12 11 10 38 38 H 1.08998 * 109.47773 * 59.99541 * 12 11 10 39 39 H 1.09002 * 109.46991 * 299.99102 * 13 12 11 40 40 H 1.08998 * 109.47455 * 59.99564 * 13 12 11 41 41 H 0.97004 * 120.00282 * 180.02562 * 17 16 14 42 42 H 0.96702 * 114.00834 * 269.98161 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0097 -2.4172 6 6 2.6207 -0.6593 -3.5460 7 6 2.9438 -2.0176 -3.4454 8 6 3.4394 -2.7606 -4.6196 9 8 3.7163 -3.9403 -4.5200 10 7 3.5852 -2.1317 -5.8026 11 6 4.0768 -2.8696 -6.9688 12 6 4.1492 -1.9296 -8.1738 13 6 4.6620 -2.7004 -9.3919 14 6 4.7328 -1.7747 -10.5789 15 1 4.4408 -0.7401 -10.4751 16 6 5.1703 -2.2484 -11.7976 17 7 5.5264 -3.5081 -11.9240 18 14 5.2587 -1.1007 -13.2688 19 1 6.5976 -0.4602 -13.3171 20 1 5.0356 -1.8761 -14.5155 21 1 4.2132 -0.0537 -13.1433 22 6 2.7876 -2.6597 -2.2080 23 8 3.0946 -3.9732 -2.0878 24 7 2.3426 -1.9901 -1.1581 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.8914 1.0370 -2.4609 33 1 2.7282 -0.1329 -4.4828 34 1 3.3646 -1.1904 -5.8820 35 1 5.0703 -3.2647 -6.7564 36 1 3.3980 -3.6932 -7.1902 37 1 3.1558 -1.5342 -8.3864 38 1 4.8282 -1.1062 -7.9522 39 1 5.6553 -3.0961 -9.1797 40 1 3.9827 -3.5235 -9.6135 41 1 5.8346 -3.8414 -12.7812 42 1 2.3541 -4.5684 -2.2682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931970396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:43 Heat of formation + Delta-G solvation = -91.453557 kcal Electronic energy + Delta-G solvation = -22328.602482 eV Core-core repulsion = 18886.054887 eV Total energy + Delta-G solvation = -3442.547595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.03284 -40.31209 -38.55999 -36.93612 -36.09307 -35.21016 -33.90891 -32.78971 -30.82838 -28.60540 -28.00256 -26.10188 -24.86969 -24.21053 -22.40173 -22.16869 -21.32168 -19.51701 -18.83507 -18.44404 -18.10191 -17.05624 -16.69160 -16.62682 -16.36349 -16.04093 -15.46092 -15.29006 -15.19533 -14.68523 -14.34075 -14.14035 -13.91558 -13.75015 -13.60213 -13.40508 -12.85434 -12.81921 -12.75116 -12.55228 -12.39264 -12.36727 -12.05109 -11.82545 -11.67848 -11.60541 -11.26627 -11.11713 -11.03716 -10.55181 -10.45820 -10.22416 -9.86010 -8.19151 -6.30698 -0.53198 0.04344 1.42368 1.43666 1.54553 1.73641 2.01536 2.41116 2.43130 2.67697 3.14808 3.33691 3.60029 3.64633 3.89598 4.06266 4.12534 4.19736 4.20483 4.26519 4.43262 4.53769 4.60889 4.77415 4.83411 4.87291 4.93487 4.96488 4.98775 5.04756 5.16725 5.22357 5.35859 5.37717 5.43384 5.45585 5.52299 5.70671 5.84431 6.21990 6.43361 6.52726 6.79391 6.87114 7.13514 7.39035 8.92975 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026729 B = 0.002517 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.306049 B =11122.573178 C =11988.150347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C -0.146 4.146 4 C 0.176 3.824 5 C -0.177 4.177 6 C -0.017 4.017 7 C -0.225 4.225 8 C 0.555 3.445 9 O -0.567 6.567 10 N -0.707 5.707 11 C 0.131 3.869 12 C -0.101 4.101 13 C 0.022 3.978 14 C -0.539 4.539 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.258 1.258 22 C 0.354 3.646 23 O -0.481 6.481 24 N -0.531 5.531 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.414 0.586 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.070 0.930 39 H -0.009 1.009 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 13.640 24.165 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 C -0.203 4.203 4 C 0.038 3.962 5 C -0.197 4.197 6 C -0.043 4.043 7 C -0.232 4.232 8 C 0.343 3.657 9 O -0.447 6.447 10 N -0.360 5.360 11 C 0.007 3.993 12 C -0.139 4.139 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.087 0.913 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.182 1.182 22 C 0.174 3.826 23 O -0.291 6.291 24 N -0.250 5.250 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.203 0.797 33 H 0.193 0.807 34 H 0.252 0.748 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.009 0.991 40 H 0.011 0.989 41 H 0.071 0.929 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -11.263 12.358 24.980 30.060 hybrid contribution 0.091 -0.009 -1.883 1.886 sum -11.172 12.349 23.097 28.474 Atomic orbital electron populations 1.21800 0.92100 1.01921 1.03785 1.20270 0.97231 0.96448 0.93054 1.21955 1.01178 0.93001 1.04190 1.21854 0.90129 0.87547 0.96719 1.22328 1.01996 1.03666 0.91665 1.22136 0.90341 0.90794 1.01021 1.21020 1.10911 0.97426 0.93832 1.18247 0.77781 0.86519 0.83176 1.90792 1.51613 1.17220 1.85060 1.45817 1.66590 1.14793 1.08780 1.21281 0.98415 0.95134 0.84491 1.21603 1.01877 0.97840 0.92580 1.18953 0.94674 0.95145 0.92767 1.21681 1.43573 0.97180 0.95292 0.91334 1.26044 0.94987 0.96714 1.02521 1.70118 1.45508 1.16150 1.25861 0.85407 0.78918 0.78636 0.77832 1.19890 1.21183 1.18240 1.19331 0.90112 0.86316 0.86796 1.84666 1.40079 1.12330 1.91993 1.67141 1.14800 1.11268 1.31827 0.93822 0.89911 0.91207 0.90025 0.90216 0.90144 0.92802 0.79727 0.80707 0.74790 0.93276 0.92873 0.90978 0.91164 0.99088 0.98926 0.92856 0.72297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 71.98 0.66 -0.53 16 2 C -0.05 -0.57 3.22 -11.54 -0.04 -0.60 16 3 C -0.15 -0.90 8.62 71.98 0.62 -0.28 16 4 C 0.18 2.96 5.79 42.58 0.25 3.21 16 5 C -0.18 -2.20 9.15 22.32 0.20 -2.00 16 6 C -0.02 -0.27 9.64 22.72 0.22 -0.05 16 7 C -0.23 -5.51 5.90 -19.91 -0.12 -5.63 16 8 C 0.56 17.10 7.77 86.69 0.67 17.78 16 9 O -0.57 -22.31 15.19 16.82 0.26 -22.05 16 10 N -0.71 -19.32 5.51 -466.28 -2.57 -21.89 16 11 C 0.13 4.55 5.67 86.38 0.49 5.04 16 12 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 13 C 0.02 1.15 4.97 29.85 0.15 1.29 16 14 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 15 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 16 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 18 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 C 0.35 9.53 7.77 85.13 0.66 10.19 16 23 O -0.48 -13.92 11.66 -66.37 -0.77 -14.70 16 24 N -0.53 -12.77 10.28 -296.06 -3.04 -15.81 16 25 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 0.23 6.47 -2.39 -0.02 0.22 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.19 0.84 6.29 -2.91 -0.02 0.82 16 33 H 0.18 1.53 6.51 -2.91 -0.02 1.51 16 34 H 0.41 8.01 6.57 -92.71 -0.61 7.40 16 35 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.42 8.76 9.06 -74.06 -0.67 8.08 16 Total: -1.00 -77.44 352.97 0.57 -76.87 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -0.24 Total: 13.42 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 4.63 Total: -4.41 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -5.33 Total: -94.45 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.52 Total: -36.75 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.44 0.57 -76.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931970396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.585 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds