Wall clock time and date at job start Tue Mar 31 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47064 * 2 1 4 4 C 1.52998 * 109.47332 * 120.00198 * 2 1 3 5 5 N 1.46495 * 109.47453 * 175.00112 * 4 2 1 6 6 C 1.35425 * 119.47137 * 89.99784 * 5 4 2 7 7 C 1.35760 * 121.23233 * 179.70052 * 6 5 4 8 8 C 1.39473 * 120.13058 * 0.27843 * 7 6 5 9 9 C 1.39339 * 118.95575 * 0.02562 * 8 7 6 10 10 C 1.47086 * 120.58328 * 179.97438 * 9 8 7 11 11 O 1.21643 * 119.99961 * 354.14548 * 10 9 8 12 12 N 1.34776 * 119.99585 * 174.14463 * 10 9 8 13 13 C 1.46499 * 119.99832 * 185.10414 * 12 10 9 14 14 C 1.52994 * 109.47418 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47268 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99945 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00155 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47410 * 59.99996 * 19 17 15 21 21 H 1.48500 * 109.47294 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47209 * 299.99842 * 19 17 15 23 23 C 1.34652 * 119.47196 * 270.26385 * 5 4 2 24 24 O 1.21886 * 120.10453 * 0.02562 * 23 5 4 25 25 H 1.09000 * 109.47632 * 299.99916 * 1 2 3 26 26 H 1.09003 * 109.47488 * 59.99703 * 1 2 3 27 27 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47024 * 240.00411 * 2 1 3 29 29 H 1.08991 * 109.47577 * 300.00350 * 3 2 1 30 30 H 1.09006 * 109.46864 * 60.00313 * 3 2 1 31 31 H 1.09005 * 109.47263 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46855 * 55.00091 * 4 2 1 33 33 H 1.09000 * 109.47210 * 295.00236 * 4 2 1 34 34 H 1.08003 * 119.38502 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.93326 * 180.25670 * 7 6 5 36 36 H 1.07996 * 120.52137 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00405 * 5.09834 * 12 10 9 38 38 H 1.09007 * 109.47017 * 300.00038 * 13 12 10 39 39 H 1.09001 * 109.47442 * 59.99364 * 13 12 10 40 40 H 1.09003 * 109.47334 * 299.99593 * 14 13 12 41 41 H 1.09010 * 109.47119 * 59.99568 * 14 13 12 42 42 H 0.96999 * 120.00430 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.2609 0.1601 1.7215 7 6 5.6167 0.0965 1.6922 8 6 6.2538 -0.9955 1.1032 9 6 5.4773 -2.0113 0.5493 10 6 6.1118 -3.1789 -0.0814 11 8 7.3199 -3.2146 -0.2183 12 7 5.3544 -4.2090 -0.5076 13 6 5.9921 -5.4187 -1.0331 14 6 4.9158 -6.4256 -1.4434 15 6 5.5718 -7.6697 -1.9845 16 1 6.6488 -7.7356 -2.0315 17 6 4.7971 -8.7240 -2.4196 18 7 3.4856 -8.6438 -2.3628 19 14 5.6102 -10.2665 -3.0897 20 1 6.4751 -10.8654 -2.0416 21 1 4.5655 -11.2437 -3.4881 22 1 6.4366 -9.9163 -4.2728 23 6 4.0639 -1.8997 0.6048 24 8 3.3625 -2.7749 0.1278 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6054 -1.7198 1.2950 33 1 1.7516 -0.1584 2.1370 34 1 3.7801 1.0113 2.1806 35 1 6.2030 0.8931 2.1257 36 1 7.3319 -1.0528 1.0768 37 1 4.3871 -4.1496 -0.4663 38 1 6.5994 -5.1616 -1.9010 39 1 6.6264 -5.8588 -0.2635 40 1 4.3089 -6.6828 -0.5752 41 1 4.2812 -5.9858 -2.2129 42 1 2.9405 -9.3853 -2.6693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935340381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:15 Heat of formation + Delta-G solvation = -53.884276 kcal Electronic energy + Delta-G solvation = -23206.482068 eV Core-core repulsion = 19765.563599 eV Total energy + Delta-G solvation = -3440.918469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.77452 -38.88172 -37.31553 -36.57498 -34.56131 -33.52773 -32.61655 -30.46372 -29.26491 -27.69100 -27.28645 -25.44115 -23.87335 -22.98508 -21.01086 -20.68771 -20.31655 -17.92457 -17.58687 -16.97483 -16.25967 -16.19031 -15.88387 -15.12774 -14.87702 -14.65145 -14.51671 -14.37800 -14.06923 -13.50789 -13.37371 -12.83545 -12.75970 -12.64664 -12.56460 -12.34364 -12.18070 -12.10636 -11.69992 -11.37721 -11.14407 -11.06784 -10.91851 -10.56649 -10.20751 -10.09342 -10.02476 -9.69471 -9.33801 -9.08089 -8.37759 -8.26500 -8.00779 -5.96149 -3.98850 0.32016 1.64569 2.27485 2.96288 3.39106 3.42061 3.45658 3.87787 3.96654 4.19444 4.20203 4.35442 4.52155 4.54136 4.59284 4.79096 4.85308 5.01226 5.14287 5.17253 5.22779 5.31371 5.38426 5.39826 5.46447 5.64459 5.69986 5.76721 5.83488 5.91365 6.04686 6.21904 6.53968 6.57587 6.73522 6.93604 7.23894 7.70318 7.77837 7.81570 8.03307 8.40149 8.45127 8.97025 9.08015 9.64666 11.15473 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019050 B = 0.003482 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.495779 B = 8040.237920 C = 9291.575925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.154 4.154 4 C 0.091 3.909 5 N -0.489 5.489 6 C 0.153 3.847 7 C -0.241 4.241 8 C 0.049 3.951 9 C -0.262 4.262 10 C 0.563 3.437 11 O -0.564 6.564 12 N -0.707 5.707 13 C 0.120 3.880 14 C 0.014 3.986 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.526 3.474 24 O -0.530 6.530 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.413 0.587 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 25.653 11.045 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.211 4.211 4 C -0.030 4.030 5 N -0.197 5.197 6 C 0.024 3.976 7 C -0.264 4.264 8 C 0.026 3.974 9 C -0.269 4.269 10 C 0.349 3.651 11 O -0.446 6.446 12 N -0.365 5.365 13 C -0.003 4.003 14 C -0.024 4.024 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.328 3.672 24 O -0.410 6.410 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.258 0.742 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.816 24.876 10.592 27.463 hybrid contribution -0.038 -0.697 -0.299 0.759 sum -4.854 24.179 10.293 26.723 Atomic orbital electron populations 1.21749 0.93524 1.02698 1.02184 1.21477 0.96962 0.96469 0.98402 1.21968 1.01126 0.95589 1.02399 1.22236 0.77055 1.04350 0.99404 1.45477 1.09059 1.18426 1.46745 1.22128 0.92575 0.91072 0.91857 1.20656 0.92926 1.02336 1.10446 1.22001 1.01554 0.88781 0.85091 1.21260 0.92093 1.00990 1.12578 1.17467 0.86479 0.82288 0.78873 1.90735 1.13938 1.81086 1.58843 1.46851 1.12523 1.15906 1.61190 1.21703 0.97475 0.83670 0.97414 1.19294 0.93444 0.92593 0.97041 1.21052 0.93192 0.99778 1.41829 0.92320 1.25007 0.94823 0.98718 0.95817 1.69971 1.03835 1.32142 1.47346 0.86580 0.78925 0.82579 0.79460 1.20162 1.21307 1.20156 1.17119 0.88950 0.81463 0.79690 1.90709 1.63550 1.38557 1.48227 0.92442 0.91950 0.91841 0.89873 0.91949 0.92369 0.92605 0.87508 0.88907 0.81890 0.83070 0.83367 0.74200 0.92676 0.92800 0.95973 0.95944 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.19 37.16 0.34 -0.55 16 2 C -0.11 -0.84 3.12 -90.62 -0.28 -1.13 16 3 C -0.15 -0.84 8.63 37.16 0.32 -0.52 16 4 C 0.09 0.69 4.83 -4.05 -0.02 0.67 16 5 N -0.49 -4.72 2.46 -119.35 -0.29 -5.01 16 6 C 0.15 0.97 8.20 -16.85 -0.14 0.83 16 7 C -0.24 -1.71 9.99 -40.01 -0.40 -2.11 16 8 C 0.05 0.56 9.70 -38.71 -0.38 0.18 16 9 C -0.26 -4.13 5.92 -104.50 -0.62 -4.75 16 10 C 0.56 11.60 7.73 -12.67 -0.10 11.50 16 11 O -0.56 -12.85 16.41 5.24 0.09 -12.76 16 12 N -0.71 -15.75 5.47 -61.49 -0.34 -16.09 16 13 C 0.12 2.95 5.62 -4.05 -0.02 2.93 16 14 C 0.01 0.38 5.09 -27.89 -0.14 0.24 16 15 C -0.52 -15.46 9.11 -34.44 -0.31 -15.78 16 16 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 19 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.53 7.78 7.44 -14.92 -0.11 7.67 16 24 O -0.53 -9.62 13.27 5.02 0.07 -9.56 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.33 6.33 -51.93 -0.33 0.00 16 32 H 0.11 1.02 7.39 -51.93 -0.38 0.63 16 33 H 0.09 0.39 8.00 -51.93 -0.42 -0.03 16 34 H 0.16 0.33 7.87 -52.48 -0.41 -0.08 16 35 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.15 1.63 7.71 -52.49 -0.40 1.23 16 37 H 0.41 9.18 5.08 -40.82 -0.21 8.97 16 38 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.02 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -36.76 349.68 -7.79 -44.55 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.34 Total: 2.35 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.96 Total: 0.81 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.11 Total: -48.03 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.15 Total: -22.32 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.76 -7.79 -44.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935340381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.333 kcal (2) G-P(sol) polarization free energy of solvation -36.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds