Wall clock time and date at job start Tue Mar 31 2020 07:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47064 * 2 1 4 4 C 1.52998 * 109.47332 * 120.00198 * 2 1 3 5 5 N 1.46495 * 109.47453 * 175.00112 * 4 2 1 6 6 C 1.35425 * 119.47137 * 89.99784 * 5 4 2 7 7 C 1.35760 * 121.23233 * 179.70052 * 6 5 4 8 8 C 1.39473 * 120.13058 * 0.27843 * 7 6 5 9 9 C 1.39339 * 118.95575 * 0.02562 * 8 7 6 10 10 C 1.47086 * 120.58328 * 179.97438 * 9 8 7 11 11 O 1.21643 * 119.99961 * 354.14548 * 10 9 8 12 12 N 1.34776 * 119.99585 * 174.14463 * 10 9 8 13 13 C 1.46499 * 119.99832 * 185.10414 * 12 10 9 14 14 C 1.52994 * 109.47418 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47268 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99945 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00155 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47410 * 59.99996 * 19 17 15 21 21 H 1.48500 * 109.47294 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47209 * 299.99842 * 19 17 15 23 23 C 1.34652 * 119.47196 * 270.26385 * 5 4 2 24 24 O 1.21886 * 120.10453 * 0.02562 * 23 5 4 25 25 H 1.09000 * 109.47632 * 299.99916 * 1 2 3 26 26 H 1.09003 * 109.47488 * 59.99703 * 1 2 3 27 27 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47024 * 240.00411 * 2 1 3 29 29 H 1.08991 * 109.47577 * 300.00350 * 3 2 1 30 30 H 1.09006 * 109.46864 * 60.00313 * 3 2 1 31 31 H 1.09005 * 109.47263 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46855 * 55.00091 * 4 2 1 33 33 H 1.09000 * 109.47210 * 295.00236 * 4 2 1 34 34 H 1.08003 * 119.38502 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.93326 * 180.25670 * 7 6 5 36 36 H 1.07996 * 120.52137 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00405 * 5.09834 * 12 10 9 38 38 H 1.09007 * 109.47017 * 300.00038 * 13 12 10 39 39 H 1.09001 * 109.47442 * 59.99364 * 13 12 10 40 40 H 1.09003 * 109.47334 * 299.99593 * 14 13 12 41 41 H 1.09010 * 109.47119 * 59.99568 * 14 13 12 42 42 H 0.96999 * 120.00430 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.2609 0.1601 1.7215 7 6 5.6167 0.0965 1.6922 8 6 6.2538 -0.9955 1.1032 9 6 5.4773 -2.0113 0.5493 10 6 6.1118 -3.1789 -0.0814 11 8 7.3199 -3.2146 -0.2183 12 7 5.3544 -4.2090 -0.5076 13 6 5.9921 -5.4187 -1.0331 14 6 4.9158 -6.4256 -1.4434 15 6 5.5718 -7.6697 -1.9845 16 1 6.6488 -7.7356 -2.0315 17 6 4.7971 -8.7240 -2.4196 18 7 3.4856 -8.6438 -2.3628 19 14 5.6102 -10.2665 -3.0897 20 1 6.4751 -10.8654 -2.0416 21 1 4.5655 -11.2437 -3.4881 22 1 6.4366 -9.9163 -4.2728 23 6 4.0639 -1.8997 0.6048 24 8 3.3625 -2.7749 0.1278 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6054 -1.7198 1.2950 33 1 1.7516 -0.1584 2.1370 34 1 3.7801 1.0113 2.1806 35 1 6.2030 0.8931 2.1257 36 1 7.3319 -1.0528 1.0768 37 1 4.3871 -4.1496 -0.4663 38 1 6.5994 -5.1616 -1.9010 39 1 6.6264 -5.8588 -0.2635 40 1 4.3089 -6.6828 -0.5752 41 1 4.2812 -5.9858 -2.2129 42 1 2.9405 -9.3853 -2.6693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935340381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:14 Heat of formation + Delta-G solvation = -79.978475 kcal Electronic energy + Delta-G solvation = -23207.613598 eV Core-core repulsion = 19765.563599 eV Total energy + Delta-G solvation = -3442.049999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.70425 -40.39641 -38.38855 -37.31131 -36.49862 -34.77569 -34.34162 -31.84835 -30.89131 -28.21399 -27.92547 -27.16497 -25.35334 -23.85604 -22.90921 -21.96969 -21.26258 -19.18750 -18.59030 -18.35768 -17.93626 -17.12774 -16.93290 -16.49479 -16.41035 -16.32090 -15.77455 -15.40919 -15.04886 -15.01444 -14.61944 -14.32669 -13.90048 -13.58564 -13.45244 -13.26295 -13.14934 -13.05478 -12.95055 -12.75637 -12.55677 -12.32389 -12.25243 -11.93282 -11.74433 -11.70021 -11.54233 -11.18380 -11.00724 -10.92215 -10.64159 -9.99729 -9.09353 -8.26181 -6.39698 -0.56066 0.78279 1.38198 1.43360 1.46383 1.51372 1.72413 2.33336 2.52781 2.71218 3.06687 3.46708 3.69570 3.77749 3.86063 3.90093 3.97237 4.12871 4.21766 4.35623 4.40795 4.45563 4.60160 4.68141 4.76166 4.79281 4.84039 4.93335 4.99139 4.99669 5.22280 5.22919 5.27668 5.36403 5.37894 5.47290 5.48160 5.56143 5.74201 5.90258 6.10546 6.61174 6.73017 6.89214 7.29748 7.32349 8.86421 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019050 B = 0.003482 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.495779 B = 8040.237920 C = 9291.575925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.149 4.149 4 C 0.087 3.913 5 N -0.481 5.481 6 C 0.186 3.814 7 C -0.238 4.238 8 C 0.078 3.922 9 C -0.328 4.328 10 C 0.559 3.441 11 O -0.599 6.599 12 N -0.719 5.719 13 C 0.138 3.862 14 C 0.027 3.973 15 C -0.550 4.550 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.977 3.023 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.266 1.266 23 C 0.518 3.482 24 O -0.584 6.584 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.230 0.770 35 H 0.203 0.797 36 H 0.149 0.851 37 H 0.412 0.588 38 H 0.046 0.954 39 H 0.049 0.951 40 H -0.001 1.001 41 H -0.003 1.003 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 29.082 13.235 32.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.206 4.206 4 C -0.033 4.033 5 N -0.186 5.186 6 C 0.056 3.944 7 C -0.260 4.260 8 C 0.054 3.946 9 C -0.335 4.335 10 C 0.349 3.651 11 O -0.484 6.484 12 N -0.378 5.378 13 C 0.014 3.986 14 C -0.011 4.011 15 C -0.588 4.588 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.191 1.191 23 C 0.322 3.678 24 O -0.470 6.470 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.165 0.835 34 H 0.246 0.754 35 H 0.220 0.780 36 H 0.167 0.833 37 H 0.257 0.743 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.015 0.985 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.788 28.366 12.810 31.491 hybrid contribution -0.125 -1.505 -0.868 1.742 sum -4.913 26.861 11.942 29.804 Atomic orbital electron populations 1.21736 0.92672 1.01935 1.03555 1.21431 0.97689 0.97677 0.96424 1.21959 1.00967 0.93689 1.03991 1.22500 0.75386 1.03825 1.01614 1.45532 1.10430 1.17582 1.45044 1.23299 0.92595 0.90509 0.87952 1.21204 0.93620 1.01671 1.09464 1.22318 1.01615 0.88303 0.82355 1.20786 0.93130 1.01501 1.18109 1.18216 0.86143 0.82939 0.77790 1.90676 1.15195 1.82078 1.60402 1.46869 1.12627 1.15926 1.62360 1.21251 0.96121 0.84302 0.96924 1.19077 0.93572 0.93279 0.95145 1.21436 0.93717 1.00823 1.42854 0.91806 1.26051 0.95418 1.02525 0.95620 1.70111 1.05531 1.33528 1.47764 0.85334 0.78075 0.77584 0.79028 1.18946 1.20260 1.19056 1.17057 0.88525 0.82349 0.79901 1.90652 1.64381 1.40903 1.51047 0.89591 0.91988 0.93757 0.94467 0.92406 0.88851 0.92705 0.90392 0.83513 0.75353 0.78046 0.83313 0.74310 0.93547 0.93285 0.98298 0.98504 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 71.98 0.66 -0.91 16 2 C -0.11 -1.52 3.12 -10.80 -0.03 -1.55 16 3 C -0.15 -1.02 8.63 71.98 0.62 -0.40 16 4 C 0.09 1.11 4.83 86.38 0.42 1.53 16 5 N -0.48 -8.18 2.46 -649.72 -1.60 -9.78 16 6 C 0.19 1.27 8.20 83.56 0.69 1.95 16 7 C -0.24 -2.11 9.99 21.99 0.22 -1.89 16 8 C 0.08 1.66 9.70 22.83 0.22 1.88 16 9 C -0.33 -10.75 5.92 -19.79 -0.12 -10.87 16 10 C 0.56 24.83 7.73 86.56 0.67 25.50 16 11 O -0.60 -28.99 16.41 -4.17 -0.07 -29.06 16 12 N -0.72 -35.15 5.47 -466.70 -2.55 -37.71 16 13 C 0.14 7.35 5.62 86.38 0.49 7.83 16 14 C 0.03 1.61 5.09 29.85 0.15 1.76 16 15 C -0.55 -34.17 9.11 25.60 0.23 -33.93 16 16 H 0.06 3.80 7.74 -2.91 -0.02 3.78 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -59.47 13.29 21.45 0.28 -59.18 16 19 Si 0.98 46.62 29.54 68.60 2.03 48.65 16 20 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.52 15.93 7.44 85.16 0.63 16.56 16 24 O -0.58 -23.41 13.27 -4.95 -0.07 -23.47 16 25 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.04 8.14 -2.38 -0.02 0.02 16 31 H 0.05 0.39 6.33 -2.38 -0.02 0.37 16 32 H 0.08 1.52 7.39 -2.39 -0.02 1.50 16 33 H 0.15 0.34 8.00 -2.39 -0.02 0.32 16 34 H 0.23 -1.28 7.87 -2.91 -0.02 -1.30 16 35 H 0.20 -0.08 8.06 -2.91 -0.02 -0.10 16 36 H 0.15 3.10 7.71 -2.91 -0.02 3.08 16 37 H 0.41 20.38 5.08 -92.76 -0.47 19.91 16 38 H 0.05 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 41 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 42 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -90.81 349.68 3.88 -86.93 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.54 Total: 15.56 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.31 Total: 8.06 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -3.87 Total: -106.67 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -0.13 Total: -52.53 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -90.81 3.88 -86.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935340381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.954 kcal (2) G-P(sol) polarization free energy of solvation -90.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds