Wall clock time and date at job start Tue Mar 31 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46788 * 2 1 4 4 C 1.40367 * 126.64142 * 265.29405 * 3 2 1 5 5 C 1.35129 * 107.10964 * 180.15918 * 4 3 2 6 6 O 1.33930 * 108.77066 * 359.59220 * 5 4 3 7 7 C 1.34910 * 109.38423 * 0.25710 * 6 5 4 8 8 C 1.46653 * 125.98931 * 179.97438 * 7 6 5 9 9 O 1.21696 * 120.00016 * 173.96467 * 8 7 6 10 10 N 1.34783 * 119.99938 * 353.96779 * 8 7 6 11 11 C 1.46492 * 119.99873 * 4.61595 * 10 8 7 12 12 C 1.53001 * 109.47551 * 83.43518 * 11 10 8 13 13 C 1.46501 * 119.99975 * 184.61271 * 10 8 7 14 14 C 1.53945 * 113.74104 * 42.87017 * 13 10 8 15 15 N 1.47811 * 86.03930 * 222.08234 * 14 13 10 16 16 C 1.36930 * 134.46122 * 204.64570 * 15 14 13 17 17 H 1.07999 * 120.00573 * 179.86729 * 16 15 14 18 18 C 1.38815 * 120.00023 * 359.86639 * 16 15 14 19 19 N 1.31617 * 119.99866 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00390 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47057 * 60.00020 * 20 18 16 22 22 H 1.48498 * 109.47521 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47410 * 300.00267 * 20 18 16 24 24 C 1.47581 * 91.04719 * 24.55154 * 15 14 13 25 25 H 1.09001 * 109.47485 * 300.00274 * 1 2 3 26 26 H 1.09002 * 109.47507 * 60.00448 * 1 2 3 27 27 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46865 * 239.99427 * 2 1 3 29 29 H 1.09002 * 109.46769 * 119.99634 * 2 1 3 30 30 H 1.07999 * 126.44470 * 0.02562 * 4 3 2 31 31 H 1.07998 * 125.61417 * 179.84609 * 5 4 3 32 32 H 1.09001 * 109.46860 * 203.44145 * 11 10 8 33 33 H 1.09009 * 109.47241 * 323.43112 * 11 10 8 34 34 H 1.08998 * 109.47003 * 60.00050 * 12 11 10 35 35 H 1.08994 * 109.47235 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47104 * 300.00058 * 12 11 10 37 37 H 1.08993 * 112.94482 * 174.46067 * 13 10 8 38 38 H 1.09003 * 113.77172 * 336.34662 * 14 13 10 39 39 H 1.09007 * 113.76916 * 107.74679 * 14 13 10 40 40 H 0.97005 * 120.00413 * 180.02562 * 19 18 16 41 41 H 1.09008 * 113.76973 * 221.15234 * 24 15 14 42 42 H 1.08995 * 113.77347 * 89.75293 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3986 2.1799 -1.1225 5 6 2.7914 3.3918 -0.6719 6 8 2.6755 3.4139 0.6621 7 6 2.2139 2.2211 1.0913 8 6 1.9535 1.8489 2.4857 9 8 1.4333 0.7793 2.7430 10 7 2.2902 2.6916 3.4823 11 6 2.8226 4.0201 3.1697 12 6 1.6648 4.9828 2.8986 13 6 2.1236 2.2791 4.8781 14 6 2.5774 0.8344 5.1558 15 7 1.3590 0.7199 5.9849 16 6 0.9896 -0.0664 7.0433 17 1 0.0122 0.0505 7.4877 18 6 1.8713 -1.0139 7.5451 19 7 3.0626 -1.1561 7.0038 20 14 1.3677 -2.0862 8.9893 21 1 0.1634 -2.8746 8.6242 22 1 2.4787 -3.0102 9.3311 23 1 1.0601 -1.2266 10.1605 24 6 0.7020 1.7946 5.2158 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.3734 1.8555 -2.1523 31 1 3.1376 4.2094 -1.2868 32 1 3.4083 4.3845 4.0136 33 1 3.4582 3.9581 2.2862 34 1 1.0294 5.0448 3.7820 35 1 2.0611 5.9713 2.6664 36 1 1.0792 4.6183 2.0546 37 1 2.5190 3.0070 5.5864 38 1 2.5701 0.1944 4.2735 39 1 3.5050 0.7669 5.7243 40 1 3.6786 -1.8184 7.3542 41 1 0.1349 2.4923 5.8322 42 1 0.1427 1.4372 4.3513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951630550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:36 Heat of formation + Delta-G solvation = 47.896998 kcal Electronic energy + Delta-G solvation = -24535.153796 eV Core-core repulsion = 21098.648894 eV Total energy + Delta-G solvation = -3436.504902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.72277 -39.80314 -36.89648 -35.61728 -34.54217 -32.05648 -31.27890 -30.08753 -29.39008 -27.20103 -24.64098 -24.53531 -23.29613 -23.20992 -22.05962 -20.98255 -19.61892 -18.73318 -17.05384 -16.64772 -16.30518 -16.11674 -15.57320 -14.85162 -14.45693 -14.37327 -14.04317 -13.87531 -13.62743 -13.46271 -12.97914 -12.80846 -12.51956 -12.36011 -12.30265 -12.20570 -11.61053 -11.37222 -11.22258 -11.20321 -10.96444 -10.79507 -10.73425 -10.56662 -10.06300 -9.93338 -9.69572 -9.46895 -9.38148 -8.62404 -8.53859 -8.04244 -6.70951 -5.64994 -2.95652 1.20335 2.37160 2.77663 3.35144 3.46491 3.47359 3.51084 3.52439 4.56439 4.60969 4.77500 4.83590 5.08041 5.28804 5.35373 5.36570 5.44401 5.50735 5.56623 5.61098 5.64218 5.74544 5.76057 5.82537 5.87626 5.91590 6.02576 6.12940 6.29786 6.32821 6.40514 6.45725 6.48749 6.64401 6.69018 6.94029 7.02248 7.37627 7.63498 7.67109 7.79603 8.09013 8.49730 9.16093 9.82323 10.73614 11.52412 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021175 B = 0.004647 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.979321 B = 6024.284183 C = 6809.609901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.093 4.093 4 C -0.220 4.220 5 C -0.026 4.026 6 O -0.156 6.156 7 C -0.068 4.068 8 C 0.591 3.409 9 O -0.488 6.488 10 N -0.594 5.594 11 C 0.100 3.900 12 C -0.163 4.163 13 C 0.089 3.911 14 C 0.156 3.844 15 N -0.603 5.603 16 C -0.216 4.216 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.112 3.888 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.204 0.796 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.253 0.747 41 H 0.036 0.964 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 12.503 -16.838 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 C -0.096 4.096 4 C -0.240 4.240 5 C -0.096 4.096 6 O -0.052 6.052 7 C -0.120 4.120 8 C 0.378 3.622 9 O -0.363 6.363 10 N -0.326 5.326 11 C -0.024 4.024 12 C -0.222 4.222 13 C -0.014 4.014 14 C 0.030 3.970 15 N -0.329 5.329 16 C -0.344 4.344 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.015 4.015 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.168 0.832 31 H 0.221 0.779 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.381 11.905 -16.191 20.101 hybrid contribution -0.187 -0.526 0.357 0.663 sum 0.194 11.380 -15.834 19.500 Atomic orbital electron populations 1.21615 0.94453 1.01756 1.01693 1.20096 0.96347 0.90187 1.03235 1.20608 1.00153 0.97777 0.91037 1.21677 1.07715 0.94616 0.99949 1.24312 1.03490 0.99952 0.81795 1.84331 1.64913 1.33809 1.22110 1.22262 1.09384 0.84926 0.95392 1.16658 0.79743 0.84394 0.81440 1.90944 1.41721 1.22182 1.81489 1.48046 1.63155 1.14654 1.06755 1.21745 0.96230 0.82489 1.01900 1.22158 0.99056 0.98893 1.02064 1.24155 0.99624 0.99109 0.78487 1.22731 0.92398 0.88263 0.93578 1.45653 1.13645 1.41075 1.32540 1.18938 0.99315 1.12097 1.04087 0.90387 1.24761 0.96493 0.99428 0.99807 1.69820 1.06947 1.37173 1.42899 0.86210 0.77238 0.80236 0.82141 1.21257 1.21622 1.21174 1.22929 0.93632 0.90444 0.94463 0.91925 0.93539 0.92404 0.91512 0.89145 0.83205 0.77948 0.90171 0.89726 0.92333 0.91934 0.92659 0.87667 0.92812 0.91461 0.93728 0.94545 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.85 37.16 0.37 -1.49 16 2 C -0.06 -0.86 5.67 -27.88 -0.16 -1.01 16 3 C -0.09 -1.29 5.45 -104.43 -0.57 -1.86 16 4 C -0.22 -2.35 10.83 -39.89 -0.43 -2.78 16 5 C -0.03 -0.24 12.08 29.63 0.36 0.11 16 6 O -0.16 -1.89 6.17 5.01 0.03 -1.86 16 7 C -0.07 -1.02 6.58 -36.80 -0.24 -1.27 16 8 C 0.59 10.72 7.01 -12.86 -0.09 10.63 16 9 O -0.49 -10.54 10.10 5.19 0.05 -10.49 16 10 N -0.59 -9.99 2.75 -169.44 -0.47 -10.45 16 11 C 0.10 1.25 5.74 -4.05 -0.02 1.23 16 12 C -0.16 -1.80 9.76 37.16 0.36 -1.44 16 13 C 0.09 1.78 4.60 -70.14 -0.32 1.46 16 14 C 0.16 3.96 6.78 -2.84 -0.02 3.94 16 15 N -0.60 -16.51 3.70 -177.86 -0.66 -17.17 16 16 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 17 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 19 N -0.92 -28.49 11.39 55.49 0.63 -27.86 16 20 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 C 0.11 2.53 8.27 -2.97 -0.02 2.51 16 25 H 0.06 0.99 7.62 -51.93 -0.40 0.59 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.51 6.87 -51.93 -0.36 1.15 16 30 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 33 H 0.08 1.01 5.34 -51.92 -0.28 0.73 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.66 7.15 -51.93 -0.37 0.29 16 37 H 0.11 1.93 7.90 -51.93 -0.41 1.52 16 38 H 0.05 1.48 5.70 -51.93 -0.30 1.18 16 39 H 0.07 1.85 7.17 -51.93 -0.37 1.48 16 40 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 42 H 0.05 1.18 6.31 -51.93 -0.33 0.85 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -34.22 336.82 -7.55 -41.77 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.14 Total: -0.09 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.05 Total: 3.13 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.49 Total: -55.48 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.22 -7.55 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951630550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.671 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds