Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46788 * 2 1 4 4 C 1.40367 * 126.64142 * 265.29405 * 3 2 1 5 5 C 1.35129 * 107.10964 * 180.15918 * 4 3 2 6 6 O 1.33930 * 108.77066 * 359.59220 * 5 4 3 7 7 C 1.34910 * 109.38423 * 0.25710 * 6 5 4 8 8 C 1.46653 * 125.98931 * 179.97438 * 7 6 5 9 9 O 1.21696 * 120.00016 * 173.96467 * 8 7 6 10 10 N 1.34783 * 119.99938 * 353.96779 * 8 7 6 11 11 C 1.46492 * 119.99873 * 4.61595 * 10 8 7 12 12 C 1.53001 * 109.47551 * 83.43518 * 11 10 8 13 13 C 1.46501 * 119.99975 * 184.61271 * 10 8 7 14 14 C 1.53945 * 113.74104 * 42.87017 * 13 10 8 15 15 N 1.47811 * 86.03930 * 222.08234 * 14 13 10 16 16 C 1.36930 * 134.46122 * 204.64570 * 15 14 13 17 17 H 1.07999 * 120.00573 * 179.86729 * 16 15 14 18 18 C 1.38815 * 120.00023 * 359.86639 * 16 15 14 19 19 N 1.31617 * 119.99866 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00390 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47057 * 60.00020 * 20 18 16 22 22 H 1.48498 * 109.47521 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47410 * 300.00267 * 20 18 16 24 24 C 1.47581 * 91.04719 * 24.55154 * 15 14 13 25 25 H 1.09001 * 109.47485 * 300.00274 * 1 2 3 26 26 H 1.09002 * 109.47507 * 60.00448 * 1 2 3 27 27 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46865 * 239.99427 * 2 1 3 29 29 H 1.09002 * 109.46769 * 119.99634 * 2 1 3 30 30 H 1.07999 * 126.44470 * 0.02562 * 4 3 2 31 31 H 1.07998 * 125.61417 * 179.84609 * 5 4 3 32 32 H 1.09001 * 109.46860 * 203.44145 * 11 10 8 33 33 H 1.09009 * 109.47241 * 323.43112 * 11 10 8 34 34 H 1.08998 * 109.47003 * 60.00050 * 12 11 10 35 35 H 1.08994 * 109.47235 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47104 * 300.00058 * 12 11 10 37 37 H 1.08993 * 112.94482 * 174.46067 * 13 10 8 38 38 H 1.09003 * 113.77172 * 336.34662 * 14 13 10 39 39 H 1.09007 * 113.76916 * 107.74679 * 14 13 10 40 40 H 0.97005 * 120.00413 * 180.02562 * 19 18 16 41 41 H 1.09008 * 113.76973 * 221.15234 * 24 15 14 42 42 H 1.08995 * 113.77347 * 89.75293 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3986 2.1799 -1.1225 5 6 2.7914 3.3918 -0.6719 6 8 2.6755 3.4139 0.6621 7 6 2.2139 2.2211 1.0913 8 6 1.9535 1.8489 2.4857 9 8 1.4333 0.7793 2.7430 10 7 2.2902 2.6916 3.4823 11 6 2.8226 4.0201 3.1697 12 6 1.6648 4.9828 2.8986 13 6 2.1236 2.2791 4.8781 14 6 2.5774 0.8344 5.1558 15 7 1.3590 0.7199 5.9849 16 6 0.9896 -0.0664 7.0433 17 1 0.0122 0.0505 7.4877 18 6 1.8713 -1.0139 7.5451 19 7 3.0626 -1.1561 7.0038 20 14 1.3677 -2.0862 8.9893 21 1 0.1634 -2.8746 8.6242 22 1 2.4787 -3.0102 9.3311 23 1 1.0601 -1.2266 10.1605 24 6 0.7020 1.7946 5.2158 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.3734 1.8555 -2.1523 31 1 3.1376 4.2094 -1.2868 32 1 3.4083 4.3845 4.0136 33 1 3.4582 3.9581 2.2862 34 1 1.0294 5.0448 3.7820 35 1 2.0611 5.9713 2.6664 36 1 1.0792 4.6183 2.0546 37 1 2.5190 3.0070 5.5864 38 1 2.5701 0.1944 4.2735 39 1 3.5050 0.7669 5.7243 40 1 3.6786 -1.8184 7.3542 41 1 0.1349 2.4923 5.8322 42 1 0.1427 1.4372 4.3513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951630550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = 25.903590 kcal Electronic energy + Delta-G solvation = -24536.107501 eV Core-core repulsion = 21098.648894 eV Total energy + Delta-G solvation = -3437.458608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.67081 -41.30327 -38.59641 -36.92122 -35.66409 -34.17741 -32.25369 -31.28357 -30.62154 -29.06179 -26.58569 -25.96947 -24.75700 -24.34132 -23.06812 -22.34847 -21.08787 -19.95713 -18.77230 -18.18755 -17.37932 -17.26145 -17.09894 -16.73464 -15.92202 -15.78902 -15.39620 -15.25265 -14.90034 -14.50712 -14.36710 -14.13187 -13.88163 -13.69210 -13.50564 -13.37601 -13.26251 -12.99887 -12.82736 -12.68477 -12.54418 -12.28027 -12.07486 -11.97160 -11.87669 -11.72201 -11.48382 -11.06067 -10.64275 -10.59531 -9.70371 -9.36868 -8.89077 -7.90170 -5.23891 0.14782 1.42801 1.48202 1.50335 1.54072 1.69249 2.15113 2.21408 2.49917 3.28270 3.49537 3.61993 3.80656 3.83328 3.90777 4.11403 4.24586 4.40812 4.44184 4.46218 4.51389 4.57906 4.58024 4.68486 4.81318 4.82856 4.87697 4.98405 5.01856 5.06403 5.11710 5.22969 5.26729 5.30224 5.35581 5.42664 5.48203 5.52976 5.85698 5.91242 6.00014 6.46800 6.90514 7.15262 7.59567 8.57164 9.27167 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021175 B = 0.004647 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.979321 B = 6024.284183 C = 6809.609901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.097 4.097 4 C -0.232 4.232 5 C 0.007 3.993 6 O -0.155 6.155 7 C -0.103 4.103 8 C 0.584 3.416 9 O -0.538 6.538 10 N -0.594 5.594 11 C 0.095 3.905 12 C -0.155 4.155 13 C 0.126 3.874 14 C 0.156 3.844 15 N -0.631 5.631 16 C -0.237 4.237 17 H 0.083 0.917 18 C -0.068 4.068 19 N -0.955 5.955 20 Si 0.984 3.016 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.115 3.885 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.179 0.821 31 H 0.258 0.742 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.043 0.957 37 H 0.130 0.870 38 H 0.025 0.975 39 H 0.038 0.962 40 H 0.248 0.752 41 H 0.057 0.943 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 15.100 -18.665 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.100 4.100 3 C -0.100 4.100 4 C -0.251 4.251 5 C -0.062 4.062 6 O -0.051 6.051 7 C -0.155 4.155 8 C 0.373 3.627 9 O -0.417 6.417 10 N -0.326 5.326 11 C -0.026 4.026 12 C -0.213 4.213 13 C 0.021 3.979 14 C 0.029 3.971 15 N -0.357 5.357 16 C -0.365 4.365 17 H 0.101 0.899 18 C -0.260 4.260 19 N -0.604 5.604 20 Si 0.811 3.189 21 H -0.207 1.207 22 H -0.218 1.218 23 H -0.195 1.195 24 C -0.011 4.011 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.197 0.803 31 H 0.273 0.727 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.148 0.852 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.527 14.570 -18.041 23.195 hybrid contribution -0.226 -1.279 0.737 1.494 sum 0.301 13.291 -17.304 21.821 Atomic orbital electron populations 1.21544 0.94208 1.01893 1.01171 1.20065 0.96602 0.90837 1.02486 1.20873 0.99276 0.97530 0.92290 1.21999 1.08125 0.94646 1.00290 1.25388 0.99646 1.00640 0.80567 1.84296 1.64739 1.32265 1.23770 1.21580 1.13147 0.86776 0.93954 1.17113 0.78798 0.83788 0.82984 1.90913 1.43920 1.24211 1.82701 1.48040 1.63131 1.16364 1.05064 1.22057 0.97136 0.80309 1.03118 1.22088 0.98132 0.99850 1.01217 1.23495 0.96801 0.96505 0.81074 1.22513 0.90870 0.91864 0.91809 1.46060 1.15136 1.41865 1.32651 1.19396 0.99627 1.12661 1.04821 0.89910 1.25693 0.96510 1.00943 1.02901 1.70043 1.08045 1.37754 1.44540 0.85081 0.76675 0.78220 0.78914 1.20725 1.21794 1.19500 1.22963 0.95130 0.89469 0.93575 0.95125 0.91116 0.92024 0.88896 0.93116 0.80319 0.72669 0.88446 0.88645 0.93144 0.88746 0.93809 0.85192 0.95734 0.94410 0.94282 0.92517 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 9.85 71.98 0.71 -2.90 16 2 C -0.06 -1.79 5.67 29.85 0.17 -1.62 16 3 C -0.10 -2.62 5.45 -19.74 -0.11 -2.72 16 4 C -0.23 -4.11 10.83 22.07 0.24 -3.87 16 5 C 0.01 0.09 12.08 67.10 0.81 0.90 16 6 O -0.15 -3.33 6.17 -4.99 -0.03 -3.36 16 7 C -0.10 -3.09 6.58 24.07 0.16 -2.93 16 8 C 0.58 22.09 7.01 86.44 0.61 22.70 16 9 O -0.54 -25.19 10.10 -4.34 -0.04 -25.23 16 10 N -0.59 -20.16 2.75 -808.21 -2.22 -22.38 16 11 C 0.09 2.19 5.74 86.38 0.50 2.69 16 12 C -0.15 -3.01 9.76 71.98 0.70 -2.30 16 13 C 0.13 5.10 4.60 46.75 0.21 5.32 16 14 C 0.16 8.36 6.78 86.44 0.59 8.95 16 15 N -0.63 -35.96 3.70 -716.63 -2.65 -38.61 16 16 C -0.24 -14.40 10.70 84.04 0.90 -13.50 16 17 H 0.08 4.79 7.83 -2.91 -0.02 4.76 16 18 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 19 N -0.96 -61.59 11.39 21.65 0.25 -61.34 16 20 Si 0.98 48.30 29.55 68.60 2.03 50.32 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 24 C 0.11 5.32 8.27 86.49 0.72 6.04 16 25 H 0.03 1.02 7.62 -2.39 -0.02 1.00 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.85 6.87 -2.39 -0.02 1.84 16 30 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.26 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.10 1.92 7.86 -2.39 -0.02 1.90 16 33 H 0.10 2.04 5.34 -2.38 -0.01 2.03 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 0.96 7.15 -2.39 -0.02 0.94 16 37 H 0.13 4.64 7.90 -2.39 -0.02 4.63 16 38 H 0.02 1.48 5.70 -2.39 -0.01 1.46 16 39 H 0.04 2.21 7.17 -2.38 -0.02 2.19 16 40 H 0.25 15.47 8.31 -92.70 -0.77 14.70 16 41 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.03 1.73 6.31 -2.39 -0.02 1.72 16 Total: -1.00 -80.89 336.82 5.01 -75.88 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.02 Total: 11.62 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.67 Total: 13.10 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -4.63 Total: -122.34 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.07 Total: -28.59 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Total: -80.89 5.01 -75.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951630550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.787 kcal (2) G-P(sol) polarization free energy of solvation -80.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds