Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47322 * 2 1 4 4 C 1.40360 * 126.64885 * 265.03023 * 3 2 1 5 5 C 1.35134 * 107.11573 * 179.97438 * 4 3 2 6 6 O 1.33925 * 108.76698 * 359.74964 * 5 4 3 7 7 C 1.34922 * 109.38335 * 0.41236 * 6 5 4 8 8 C 1.46656 * 125.98505 * 179.86160 * 7 6 5 9 9 O 1.21698 * 119.99725 * 179.68221 * 8 7 6 10 10 N 1.34780 * 120.00062 * 359.68832 * 8 7 6 11 11 C 1.46496 * 119.99734 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47552 * 324.99740 * 11 10 8 13 13 C 1.53008 * 109.47421 * 84.99427 * 11 10 8 14 14 C 1.52998 * 109.46930 * 204.99506 * 11 10 8 15 15 C 1.53504 * 114.20785 * 179.97438 * 14 11 10 16 16 N 1.47069 * 87.98363 * 220.34571 * 15 14 11 17 17 C 1.36941 * 136.05552 * 207.07801 * 16 15 14 18 18 H 1.08000 * 119.99396 * 7.56018 * 17 16 15 19 19 C 1.38806 * 119.99993 * 187.55101 * 17 16 15 20 20 N 1.31621 * 119.99759 * 174.37714 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 354.38427 * 19 17 16 22 22 H 1.48501 * 109.46963 * 174.94900 * 21 19 17 23 23 H 1.48498 * 109.47184 * 294.94894 * 21 19 17 24 24 H 1.48507 * 109.47082 * 54.95224 * 21 19 17 25 25 C 1.47064 * 87.88742 * 27.34488 * 16 15 14 26 26 H 1.09003 * 109.47165 * 59.99428 * 1 2 3 27 27 H 1.08998 * 109.47214 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46587 * 299.99829 * 1 2 3 29 29 H 1.09007 * 109.46972 * 240.00550 * 2 1 3 30 30 H 1.09001 * 109.47581 * 120.00251 * 2 1 3 31 31 H 1.08004 * 126.44423 * 359.97266 * 4 3 2 32 32 H 1.08001 * 125.61446 * 180.02562 * 5 4 3 33 33 H 0.96996 * 120.00127 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.46240 * 60.00200 * 13 11 10 35 35 H 1.08991 * 109.47021 * 179.97438 * 13 11 10 36 36 H 1.08994 * 109.46942 * 300.00242 * 13 11 10 37 37 H 1.09002 * 113.41395 * 313.19707 * 14 11 10 38 38 H 1.08997 * 113.46758 * 105.56146 * 15 14 11 39 39 H 1.09000 * 113.51898 * 335.13170 * 15 14 11 40 40 H 0.96993 * 120.00423 * 354.88754 * 20 19 17 41 41 H 1.08993 * 113.47012 * 87.43421 * 25 16 15 42 42 H 1.09000 * 113.46758 * 217.87997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4036 2.1782 -1.1219 5 6 2.7908 3.3922 -0.6718 6 8 2.6699 3.4159 0.6618 7 6 2.2140 2.2210 1.0914 8 6 1.9530 1.8489 2.4858 9 8 1.5353 0.7370 2.7509 10 7 2.1757 2.7384 3.4736 11 6 1.9156 2.3665 4.8665 12 1 1.0505 1.7050 4.9105 13 6 3.1380 1.6460 5.4389 14 6 1.6359 3.6271 5.6872 15 6 1.3470 3.3609 7.1711 16 7 0.2990 4.3901 7.0982 17 6 -0.2951 5.2564 7.9768 18 1 0.0907 5.3563 8.9806 19 6 -1.3928 6.0061 7.5771 20 7 -2.0317 6.7548 8.4510 21 14 -1.9634 5.9521 5.7993 22 1 -3.2165 6.7363 5.6576 23 1 -0.9138 6.5341 4.9247 24 1 -2.2135 4.5432 5.4022 25 6 0.1650 4.0749 5.6679 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.3837 1.8521 -2.1513 32 1 3.1361 4.2101 -1.2867 33 1 2.5089 3.6245 3.2623 34 1 4.0031 2.3077 5.3950 35 1 2.9446 1.3698 6.4753 36 1 3.3372 0.7480 4.8542 37 1 2.3526 4.4285 5.5079 38 1 2.1736 3.6288 7.8291 39 1 0.9602 2.3607 7.3663 40 1 -1.7827 6.7263 9.3880 41 1 -0.5333 3.2628 5.4660 42 1 -0.0153 4.9513 5.0454 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970369161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = 30.513104 kcal Electronic energy + Delta-G solvation = -23564.087362 eV Core-core repulsion = 20126.828638 eV Total energy + Delta-G solvation = -3437.258724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.91282 -39.85253 -38.51788 -35.57904 -34.68455 -32.46942 -31.64427 -30.99992 -29.23751 -27.75446 -25.49813 -24.59293 -23.73954 -22.80295 -21.57522 -20.64190 -20.17002 -19.30779 -18.09633 -17.47573 -16.57065 -16.29066 -16.25194 -15.33553 -14.81885 -14.68231 -14.37416 -13.88557 -13.83981 -13.76112 -13.33477 -13.16330 -12.98925 -12.77804 -12.53993 -12.31643 -11.91644 -11.84060 -11.55145 -11.46210 -11.09202 -10.95110 -10.67757 -10.35897 -10.31926 -10.04592 -9.94178 -9.31590 -9.13656 -9.02923 -8.90221 -8.73282 -7.16473 -6.29439 -3.23477 0.90276 2.12779 2.53404 3.10246 3.17871 3.40823 3.45448 3.65046 4.44889 4.51354 4.59789 4.63148 4.73999 4.89549 5.07840 5.11659 5.20533 5.30839 5.41091 5.43501 5.47295 5.52276 5.55815 5.72199 5.74958 5.83589 5.85879 5.99113 6.04943 6.13439 6.14868 6.20928 6.22905 6.26444 6.29917 6.38316 6.51377 6.68054 6.90394 7.12109 7.46225 8.06840 8.23652 8.97675 9.50033 10.36680 11.20606 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.004027 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.161264 B = 6950.823478 C = 7452.244310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.087 4.087 4 C -0.224 4.224 5 C -0.007 4.007 6 O -0.163 6.163 7 C -0.080 4.080 8 C 0.601 3.399 9 O -0.518 6.518 10 N -0.710 5.710 11 C 0.152 3.848 12 H 0.093 0.907 13 C -0.158 4.158 14 C -0.140 4.140 15 C 0.135 3.865 16 N -0.629 5.629 17 C -0.304 4.304 18 H 0.083 0.917 19 C -0.024 4.024 20 N -0.935 5.935 21 Si 1.069 2.931 22 H -0.295 1.295 23 H -0.293 1.293 24 H -0.287 1.287 25 C 0.102 3.898 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.209 0.791 33 H 0.404 0.596 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.261 0.739 41 H 0.045 0.955 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.277 -10.974 -19.908 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C -0.089 4.089 4 C -0.243 4.243 5 C -0.076 4.076 6 O -0.058 6.058 7 C -0.132 4.132 8 C 0.387 3.613 9 O -0.396 6.396 10 N -0.360 5.360 11 C 0.047 3.953 12 H 0.111 0.889 13 C -0.217 4.217 14 C -0.160 4.160 15 C 0.008 3.992 16 N -0.357 5.357 17 C -0.430 4.430 18 H 0.101 0.899 19 C -0.223 4.223 20 N -0.577 5.577 21 Si 0.902 3.098 22 H -0.222 1.222 23 H -0.222 1.222 24 H -0.214 1.214 25 C -0.023 4.023 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.226 0.774 33 H 0.239 0.761 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.807 -10.693 -20.322 25.380 hybrid contribution 1.277 -0.172 0.694 1.463 sum 12.084 -10.865 -19.628 25.482 Atomic orbital electron populations 1.21644 0.94296 1.01836 1.02020 1.20129 0.96417 0.90108 1.03262 1.20635 0.99496 0.97786 0.91029 1.21729 1.07839 0.94607 1.00163 1.24343 1.02465 0.99976 0.80861 1.84077 1.65159 1.33458 1.23086 1.21995 1.10858 0.85182 0.95152 1.16535 0.78097 0.84917 0.81704 1.90850 1.46201 1.20444 1.82102 1.46054 1.66388 1.16699 1.06837 1.21096 0.98832 0.96747 0.78591 0.88910 1.22126 0.97687 1.00318 1.01546 1.23576 0.98896 0.96267 0.97299 1.22253 0.91978 0.92881 0.92090 1.45965 1.44805 1.39506 1.05403 1.20167 1.10970 1.17287 0.94612 0.89902 1.25701 0.93339 0.96659 1.06587 1.70912 1.41842 1.41785 1.03141 0.83728 0.75436 0.75766 0.74876 1.22195 1.22169 1.21394 1.22841 0.93242 0.98101 0.88134 0.93141 0.92269 0.92071 0.91265 0.89222 0.82806 0.77437 0.76107 0.92484 0.91058 0.92428 0.88329 0.93465 0.94240 0.92923 0.93699 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.06 -0.65 5.72 -27.88 -0.16 -0.81 16 3 C -0.09 -0.98 5.45 -104.43 -0.57 -1.55 16 4 C -0.22 -1.97 10.83 -39.89 -0.43 -2.41 16 5 C -0.01 -0.05 12.08 29.63 0.36 0.30 16 6 O -0.16 -1.80 10.40 4.99 0.05 -1.74 16 7 C -0.08 -1.01 7.13 -36.80 -0.26 -1.27 16 8 C 0.60 8.50 7.75 -12.86 -0.10 8.40 16 9 O -0.52 -8.36 14.30 5.19 0.07 -8.29 16 10 N -0.71 -9.33 5.07 -55.12 -0.28 -9.61 16 11 C 0.15 2.14 2.47 -67.93 -0.17 1.98 16 12 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 13 C -0.16 -1.93 9.29 37.16 0.35 -1.58 16 14 C -0.14 -2.32 3.67 -89.96 -0.33 -2.65 16 15 C 0.14 2.59 7.33 -8.50 -0.06 2.53 16 16 N -0.63 -15.58 3.69 -184.57 -0.68 -16.26 16 17 C -0.30 -8.89 11.08 -15.06 -0.17 -9.06 16 18 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 19 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 20 N -0.93 -29.89 13.70 55.49 0.76 -29.13 16 21 Si 1.07 27.39 25.16 -169.99 -4.28 23.11 16 22 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 23 H -0.29 -7.07 6.51 56.52 0.37 -6.70 16 24 H -0.29 -6.96 6.21 56.52 0.35 -6.61 16 25 C 0.10 2.17 5.27 -8.36 -0.04 2.13 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.77 7.92 -51.92 -0.41 0.36 16 29 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.09 1.08 6.73 -51.93 -0.35 0.73 16 31 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.21 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.40 4.68 8.36 -40.82 -0.34 4.34 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 41 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 42 H 0.05 1.13 4.73 -51.93 -0.25 0.89 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -34.32 343.60 -6.88 -41.20 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.39 Total: 1.47 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.32 Total: -5.92 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.20 Total: -55.01 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.13 Total: -10.03 kcal Atomic # 14 Polarization: 27.39 SS G_CDS: -4.28 Total: 23.11 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.32 -6.88 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970369161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.718 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds